Basic Information

Insect: Schizaphis graminum
Gene Symbol: -
Assembly: GCA_003264975.1
Location: QEWZ01001439.1:111148-116027[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 24 2.1e-06 0.0002 22.1 0.7 1 23 107 129 107 129 0.98

2 24 4.4e-05 0.0043 17.9 2.3 2 23 139 161 138 161 0.97

3 24 1.6 1.5e+02 3.6 1.6 1 23 165 186 165 186 0.90

4 24 0.015 1.4 10.0 5.1 1 23 215 237 215 237 0.99

5 24 0.6 58 4.9 0.4 2 23 243 264 242 264 0.90

6 24 0.74 72 4.7 3.9 1 20 269 288 269 290 0.91

7 24 0.008 0.77 10.9 0.9 2 21 312 331 311 336 0.92

8 24 6.4e-05 0.0062 17.4 0.6 1 23 337 359 337 359 0.98

9 24 0.078 7.6 7.7 2.0 1 23 712 734 708 734 0.89

10 24 3e-05 0.0029 18.5 2.1 1 23 804 827 804 827 0.97

11 24 0.31 30 5.8 3.9 1 23 833 855 833 855 0.96

12 24 0.085 8.2 7.6 6.6 2 23 908 930 908 930 0.95

13 24 7.3e-05 0.007 17.3 2.8 3 23 984 1004 982 1004 0.97

14 24 0.0031 0.3 12.1 2.3 1 23 1010 1032 1010 1032 0.98

15 24 2.7e-06 0.00026 21.8 1.2 1 23 1081 1103 1081 1103 0.98

16 24 0.0068 0.66 11.1 1.1 1 23 1109 1131 1109 1131 0.97

17 24 0.0057 0.56 11.3 0.9 2 20 1163 1181 1162 1183 0.95

18 24 3.6e-05 0.0035 18.2 2.7 1 23 1213 1236 1213 1236 0.97

19 24 4.9e-05 0.0047 17.8 0.1 2 23 1280 1302 1279 1302 0.95

20 24 5.8e-05 0.0056 17.6 3.9 2 23 1310 1332 1309 1332 0.96

21 24 0.0012 0.11 13.5 0.9 1 23 1364 1386 1364 1386 0.97

22 24 0.00013 0.013 16.5 0.3 1 23 1391 1414 1391 1414 0.95

23 24 0.0032 0.31 12.1 0.7 2 23 1446 1467 1446 1467 0.98

24 24 4.7e-05 0.0046 17.9 2.3 1 22 1473 1494 1473 1494 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	24	2.1e-06	0.0002	22.1	0.7	1	23	107	129	107	129	0.98
2	24	4.4e-05	0.0043	17.9	2.3	2	23	139	161	138	161	0.97
3	24	1.6	1.5e+02	3.6	1.6	1	23	165	186	165	186	0.90
4	24	0.015	1.4	10.0	5.1	1	23	215	237	215	237	0.99
5	24	0.6	58	4.9	0.4	2	23	243	264	242	264	0.90
6	24	0.74	72	4.7	3.9	1	20	269	288	269	290	0.91
7	24	0.008	0.77	10.9	0.9	2	21	312	331	311	336	0.92
8	24	6.4e-05	0.0062	17.4	0.6	1	23	337	359	337	359	0.98
9	24	0.078	7.6	7.7	2.0	1	23	712	734	708	734	0.89
10	24	3e-05	0.0029	18.5	2.1	1	23	804	827	804	827	0.97
11	24	0.31	30	5.8	3.9	1	23	833	855	833	855	0.96
12	24	0.085	8.2	7.6	6.6	2	23	908	930	908	930	0.95
13	24	7.3e-05	0.007	17.3	2.8	3	23	984	1004	982	1004	0.97
14	24	0.0031	0.3	12.1	2.3	1	23	1010	1032	1010	1032	0.98
15	24	2.7e-06	0.00026	21.8	1.2	1	23	1081	1103	1081	1103	0.98
16	24	0.0068	0.66	11.1	1.1	1	23	1109	1131	1109	1131	0.97
17	24	0.0057	0.56	11.3	0.9	2	20	1163	1181	1162	1183	0.95
18	24	3.6e-05	0.0035	18.2	2.7	1	23	1213	1236	1213	1236	0.97
19	24	4.9e-05	0.0047	17.8	0.1	2	23	1280	1302	1279	1302	0.95
20	24	5.8e-05	0.0056	17.6	3.9	2	23	1310	1332	1309	1332	0.96
21	24	0.0012	0.11	13.5	0.9	1	23	1364	1386	1364	1386	0.97
22	24	0.00013	0.013	16.5	0.3	1	23	1391	1414	1391	1414	0.95
23	24	0.0032	0.31	12.1	0.7	2	23	1446	1467	1446	1467	0.98
24	24	4.7e-05	0.0046	17.9	2.3	1	22	1473	1494	1473	1494	0.96

Sequence Information

Coding Sequence: ATGACTCCCATGAAAGATTACATAAAAGTTGAGGTTACTGGTGATGCTGATGCTGTTACcagtgaATTATATGTTGAAAACACTATTGAAAATCCTGCATGGTATACAGTTGAAGATAATCATGTATCTTTGATAtctgaaaatgttgaaaaagtTATAAAACTTGAAACTGATATGTTGGATGACTGTATGTGGGAAAGCAGGATTGAAATTTCTAAAGATGTTGCCAACCAAAATAATGTGGAGTTATCCTTGGAAACTCAGAATATCCCAGTTGATAATATTGACATTAACCCTGAAAGtacaagtaataaaatattttactgtaatatttgTGGAAAAAGCTTTGCtttaaattatcttttgaaAAATCACATAAAAGAACACAAAAGacaagtaaattttaaaattaataaatgtaaatattgtggAGAAcggtttaagttaaaatttggtttgaatagacacattaaaaaatatcacaatCACATGTTTGAATGCAAATTTTGCAAACgtatttttgaaataagtatatataatgaaCACATGAAAACTCACGAAAAAAAGGAAACTAGAATTGATACTATTCCTAATATAAAATTGCGCAAATTAAATGGTGTTTGGAAaagtaaaacaaatgtatttaaatgtaacaTTTGTTTCCAAAAATGTCATAGTGAAAAGAATTTAGTAGAACATATGGAAACTCATGACAATTTTCAAACACAGTGTAATGATTGCTTAAAGTACATATCAGTTTCTGAATTGAATAATCATATgcaacaaatacataataaacatttatttaaatgtcaGAAGTGTAATCTACAGTTTGAAAAACAACAGCATTTGAACTGTCATTTAattcattgtttaaaaagttCTTCTACCAAATGGAATAAGGTTCGTGGTAAATGCAAGGTGAATTCAACAACTTGCTCTGCTTGTGGAATTGTCTTTAATAATTCTTTATCATTGAAAAATCATATGACTATTGGCTGTAAGCATTACACTTGTAAATATTGTGGACAATTTTTTAGTTCAAGGATTTTATGGCTAAGACATATAGATGTTCACGAAAAAGATGAAAAGTGTGTAATGTTAACAGTAAATACCgataaaacaactaaaattaaagaatatGATCAAACTAAGGTTGTAAATGATTCTTCTTGTAATACAAATGAAGGTCAACTATTATCTAGAAAtgttattggaaaaaataattcagatCAAACCAATTTAGTGATCAGCAATGACCACATTGCACCAAatttaatggtaaataatataaatttaaatattaatgaagaaaaaatatcatgtaAGAAAGAAGCAGTGAATAACAATGAGTCAATCACACTAAATATATCACAAAATTTAATGATAGATGAAAGCAATACTaatttaaagcaaaataaaGTCTTAGTAAATGTCAAAAAAAGAAATGGTTCAGGTCAAATGGATTTAATGAACAGCAATGCAACAATTGTATCGACTGCTTCAAATAATTCAATGGCAAATGAttgtcatattaaaaatataaagcaagAAAGATGTCTTAATGCAAATGCCAAAGACAGAAATATTTCACATCAAATGATCAACAATCAACCAACTGTATCGGTTGCTCCACATAATTTAATTGCAAACAATTGCCTTGTTTTAAATATCAAGCAAGAAAAAGACTTGTGTACAACTAACAAAGAAACAAATAGTCCAgatcaaataaatttagttaacaGTAATGAATCAATAATTTCTACTGTTTCACATActtcaatatcaaataatatcttaaatattaagCAAGAAAAAGACACGAGTACAGATGTCAGAAGAAGAACAAGTTCtgataatatagatttaatgaATAGTAATGAATCAAATGATTCAATGGCATTTCAAAACCCTATTAATATAGCTAATAGTCATATTGCATCTACCATTAGAGAAACACCTTATTTCTGTATTAGAAAATTGcctaatattaaaagtatattttgcaATGATGATAATGAACAGACATcgcaaaataatgttatatttatatgtagaaTTTGTAGAAAATCTCCAGCTACAGATATACATTCATTTGCATTACACATGAGTGATCACAGTGAGTGCAGCATGCATGAATGTATTGTTTGTGATAAGACATTTACCACTGTACTTCTTTGGACAAACCATATGACTTATCATCAACAGCAATTAGATTTAAATGTATCAGCAGTGCAGTATAATCCTATAGAAACTGATCTAAATTCATCGGGCCCAATTAATTCTGGAAATATGGAACCTCAAGTTAGTACAACTTCAAGAAATAGAAAATTCAAGATATCTTCATTGAATGATTCATATTTAGAAATAACAAGCTTGAATAATAgtgccaataaaataaaaaaacaatatgactGTAGTATATGTAAAAAAGTATTTCCTTCCAAGGTCACATTAAAAGTTCATCATCAAACTcgtcataataaattacaatcattTTTCTGTAGGTATTGTGATAGAATATTTTCTGGAAGGGGTCAATGTACAAATCATGAAAAATCACACATTGGCTTAAACGAAttagttttacaaaataatgagGATAATTATCCAGAAGCAATAGTAGACCATAACAACATAagcatagaaaataaaaacattgattcTGAGACAAGGtcaataaaacatacaaataaaataaaattatcaactagaaaaaattattgtaatttatgtagAAGAAAATTTACAAAGCGCTGTTATTTCACAAATCATAtgcaattaaaacataatataaatataaactcatCAAAACAACTTGCATCGATAGATTGCAGAAAGCCAATCATTCTATCTAAAAACATAGAGTTGactaataaatatgaaaacaaattatcaatTCCGGTAGATAAAGATTTGAATAATCAAAATGAAAAGAAATCAACATTTTGTACCAtttgtaataaacattttgCACATCTTGGTGCCTTAACCAATCATATGAATATTCATTCTGATCATAAactatacaaatgtcaatattGTTCTAGAAAATTTAGAAGAGAAGGTCCTTATATAATGCATGAGAAAAAGCATGTATTAAACAATGAAATTAAAAGTGCTCCCAATCAAAATAGGAATAATATAACAGTTGAAGTTCATGAAAATTGTAACGATTTTAATAATCCAGTGGATGGAAATTCAAatggtaaaaatgtaattaacttGAAACATTTATGGTTTACCTGTGATGTGTGtgataaaaaattttctacTCCATTCTTATTGAATGTACACCGAAAGTCACATCCTGATGTTGTACCATACATATGTAAGATTTGTAATAGATCATACTCATTGAAATTTCGATGGAATTGGCATTTAAAAGAACATTACATAAGACATTATAGTaaacaacatattaataatcttaaatcAAACATTGGTAAACAAAAGATTGGATCTATACATCATCAAGATAAAATGAAATGtcgatattgtaaaaaagaataTAACTCAATATCTCAGTGGAAAAAACACATGACATTGAGCAAGGAATGTCGTCGCCATTGTAAAAGTAACCTTCCAGAATTTACATCAAATCAAGCTTCAAAGAAATCTACCAAATCTTGtcgatttaaatgtaatatttgtaagaaaacatATAGTACCTCTTATAATCGATCAGTACATATGAAAAATGTTCACAATAAGTTAGATACAACAGattcaaatattcataataataccagttttcaaaaagaaaaaccAATAGAAATAATACAACAGAAACCAGTGGTTAAGAAACGAAATAGAAGTAATCACATTAATAGCACTAAATGTAAGTTATGTGGTAAAGTATATAGTAGTGCAGCTAATTTAGGTCGCCATGTATCCATAATTCACACAAATAGTTATAAACCTATGACCTGTAATGTTTGTGGAAAGAcatttaaacacaaattttcttatagagaacatttaaaaattaaacacaaaaaattatttaaaaattatgaagaaataaactgtaaaaataaaagaaccAACAGGAAAATTATACCAATGAATAAAAAAGGAATTACGAAATACTTTtgcaaaatttgtaaaattaagtttgcagacaatattacattacaagAACATTCAAAGATGCAtatagtaaatatgtataagtgTAAAGACTGTGGTCAGCAATTCGAGACAAATGTTACTCTAGGTAATCATATTTTAGAAAACCATAGTGCTAATATttctacatttaataaaaatgaaaatgtcaaGAATTATGAGAATCAAAATGCATCtctaaaagtaattaataataatcctGCTCAATGTAAAGTTTGTTTGAAAATCTTAAAAGACCCTGGATATTTACATGAACACATGAGATTACACACAGGTGTCAAACCATTCAAATGTGATAATTGTAACACGGCTTTCAGATTTAAATCAAACTTAAGAATGCATCAGAAGAAAAATCTGCCATGTTATgtcccataa
Protein Sequence: MTPMKDYIKVEVTGDADAVTSELYVENTIENPAWYTVEDNHVSLISENVEKVIKLETDMLDDCMWESRIEISKDVANQNNVELSLETQNIPVDNIDINPESTSNKIFYCNICGKSFALNYLLKNHIKEHKRQVNFKINKCKYCGERFKLKFGLNRHIKKYHNHMFECKFCKRIFEISIYNEHMKTHEKKETRIDTIPNIKLRKLNGVWKSKTNVFKCNICFQKCHSEKNLVEHMETHDNFQTQCNDCLKYISVSELNNHMQQIHNKHLFKCQKCNLQFEKQQHLNCHLIHCLKSSSTKWNKVRGKCKVNSTTCSACGIVFNNSLSLKNHMTIGCKHYTCKYCGQFFSSRILWLRHIDVHEKDEKCVMLTVNTDKTTKIKEYDQTKVVNDSSCNTNEGQLLSRNVIGKNNSDQTNLVISNDHIAPNLMVNNINLNINEEKISCKKEAVNNNESITLNISQNLMIDESNTNLKQNKVLVNVKKRNGSGQMDLMNSNATIVSTASNNSMANDCHIKNIKQERCLNANAKDRNISHQMINNQPTVSVAPHNLIANNCLVLNIKQEKDLCTTNKETNSPDQINLVNSNESIISTVSHTSISNNILNIKQEKDTSTDVRRRTSSDNIDLMNSNESNDSMAFQNPINIANSHIASTIRETPYFCIRKLPNIKSIFCNDDNEQTSQNNVIFICRICRKSPATDIHSFALHMSDHSECSMHECIVCDKTFTTVLLWTNHMTYHQQQLDLNVSAVQYNPIETDLNSSGPINSGNMEPQVSTTSRNRKFKISSLNDSYLEITSLNNSANKIKKQYDCSICKKVFPSKVTLKVHHQTRHNKLQSFFCRYCDRIFSGRGQCTNHEKSHIGLNELVLQNNEDNYPEAIVDHNNISIENKNIDSETRSIKHTNKIKLSTRKNYCNLCRRKFTKRCYFTNHMQLKHNININSSKQLASIDCRKPIILSKNIELTNKYENKLSIPVDKDLNNQNEKKSTFCTICNKHFAHLGALTNHMNIHSDHKLYKCQYCSRKFRREGPYIMHEKKHVLNNEIKSAPNQNRNNITVEVHENCNDFNNPVDGNSNGKNVINLKHLWFTCDVCDKKFSTPFLLNVHRKSHPDVVPYICKICNRSYSLKFRWNWHLKEHYIRHYSKQHINNLKSNIGKQKIGSIHHQDKMKCRYCKKEYNSISQWKKHMTLSKECRRHCKSNLPEFTSNQASKKSTKSCRFKCNICKKTYSTSYNRSVHMKNVHNKLDTTDSNIHNNTSFQKEKPIEIIQQKPVVKKRNRSNHINSTKCKLCGKVYSSAANLGRHVSIIHTNSYKPMTCNVCGKTFKHKFSYREHLKIKHKKLFKNYEEINCKNKRTNRKIIPMNKKGITKYFCKICKIKFADNITLQEHSKMHIVNMYKCKDCGQQFETNVTLGNHILENHSANISTFNKNENVKNYENQNASLKVINNNPAQCKVCLKILKDPGYLHEHMRLHTGVKPFKCDNCNTAFRFKSNLRMHQKKNLPCYVP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01305846;
90% Identity: iTF_01304354; iTF_01305846;
80% Identity: -