Basic Information

Insect: Rhopalosiphum padi
Gene Symbol: -
Assembly: None
Location: scf7180000007817.2339035:1067190-1075694[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 24 6.3e-06 0.00079 20.3 1.1 1 23 107 129 107 129 0.97

2 24 3.9e-05 0.0049 17.8 2.0 2 23 139 161 138 161 0.97

3 24 0.046 5.8 8.1 3.4 1 23 165 186 165 186 0.98

4 24 0.0099 1.2 10.2 5.0 1 23 215 237 215 237 0.99

5 24 1.2 1.5e+02 3.7 0.3 2 23 243 264 242 264 0.89

6 24 0.74 94 4.3 4.3 1 20 269 288 269 290 0.91

7 24 0.01 1.3 10.2 0.9 2 21 312 331 311 336 0.92

8 24 2.4e-05 0.003 18.4 0.8 1 23 337 359 337 359 0.98

9 24 0.058 7.3 7.8 2.1 1 23 712 734 708 734 0.88

10 24 2.8e-05 0.0035 18.2 3.8 1 23 804 826 804 827 0.95

11 24 0.24 31 5.8 3.9 1 23 833 855 833 855 0.96

12 24 0.066 8.3 7.6 5.7 2 23 908 930 908 930 0.95

13 24 0.00012 0.015 16.3 2.7 3 23 984 1004 982 1004 0.97

14 24 0.00026 0.032 15.2 4.1 1 23 1010 1032 1010 1032 0.98

15 24 1.3e-05 0.0017 19.2 1.0 1 23 1084 1106 1084 1106 0.98

16 24 0.0053 0.66 11.1 1.1 1 23 1112 1134 1112 1134 0.97

17 24 0.0069 0.87 10.7 0.7 2 21 1166 1185 1165 1186 0.94

18 24 5e-05 0.0063 17.4 2.2 1 23 1216 1239 1216 1239 0.97

19 24 1.2e-05 0.0015 19.4 0.1 2 23 1283 1305 1282 1305 0.95

20 24 4.5e-05 0.0056 17.6 3.9 2 23 1313 1335 1312 1335 0.96

21 24 0.00091 0.11 13.5 0.9 1 23 1367 1389 1367 1389 0.97

22 24 0.0001 0.013 16.5 0.3 1 23 1394 1417 1394 1417 0.95

23 24 0.0025 0.31 12.1 0.7 2 23 1449 1470 1449 1470 0.98

24 24 3.7e-05 0.0046 17.9 2.3 1 22 1476 1497 1476 1497 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	24	6.3e-06	0.00079	20.3	1.1	1	23	107	129	107	129	0.97
2	24	3.9e-05	0.0049	17.8	2.0	2	23	139	161	138	161	0.97
3	24	0.046	5.8	8.1	3.4	1	23	165	186	165	186	0.98
4	24	0.0099	1.2	10.2	5.0	1	23	215	237	215	237	0.99
5	24	1.2	1.5e+02	3.7	0.3	2	23	243	264	242	264	0.89
6	24	0.74	94	4.3	4.3	1	20	269	288	269	290	0.91
7	24	0.01	1.3	10.2	0.9	2	21	312	331	311	336	0.92
8	24	2.4e-05	0.003	18.4	0.8	1	23	337	359	337	359	0.98
9	24	0.058	7.3	7.8	2.1	1	23	712	734	708	734	0.88
10	24	2.8e-05	0.0035	18.2	3.8	1	23	804	826	804	827	0.95
11	24	0.24	31	5.8	3.9	1	23	833	855	833	855	0.96
12	24	0.066	8.3	7.6	5.7	2	23	908	930	908	930	0.95
13	24	0.00012	0.015	16.3	2.7	3	23	984	1004	982	1004	0.97
14	24	0.00026	0.032	15.2	4.1	1	23	1010	1032	1010	1032	0.98
15	24	1.3e-05	0.0017	19.2	1.0	1	23	1084	1106	1084	1106	0.98
16	24	0.0053	0.66	11.1	1.1	1	23	1112	1134	1112	1134	0.97
17	24	0.0069	0.87	10.7	0.7	2	21	1166	1185	1165	1186	0.94
18	24	5e-05	0.0063	17.4	2.2	1	23	1216	1239	1216	1239	0.97
19	24	1.2e-05	0.0015	19.4	0.1	2	23	1283	1305	1282	1305	0.95
20	24	4.5e-05	0.0056	17.6	3.9	2	23	1313	1335	1312	1335	0.96
21	24	0.00091	0.11	13.5	0.9	1	23	1367	1389	1367	1389	0.97
22	24	0.0001	0.013	16.5	0.3	1	23	1394	1417	1394	1417	0.95
23	24	0.0025	0.31	12.1	0.7	2	23	1449	1470	1449	1470	0.98
24	24	3.7e-05	0.0046	17.9	2.3	1	22	1476	1497	1476	1497	0.96

Sequence Information

Coding Sequence: ATGACTCCAATGAAAGATTACATAAAAGTTGAGGTTACTGGTGATGCTGATGCTGTTACCAGTGAATTATATGTTGAAAACACTATTGAAAATCCTGCATGGTATACAGTTGAAGATAATCATGTATCTTTGATATCTGAAAATGTTGAGAAAGTTATAAAACTTGAAACTGATATATTGGATGATTGTATGTGGGAAAGTAGGATCGAAATTTCTAAAGATGTTGCCAACCAAAATAATGTGGAGTTATCCTTGGAAACTCAGAATATCCCAGTTGATAATATTGACATTAATCCTGAAAGTACAAGTAATAAAATATTTTACTGTAATATTTGTGGAAAAAGCTTTGCTTTAAATTATCTTTTGAAAAATCACACAAAAGAACACAAAAGACAAGTAAATTTTAAAATTAATAAATGTAAATATTGTGGAGAACGGTTTAAGTTAAAATTTGGTTTGAATAGACACATTCAAAAATATCACAATCACATGTATGAATGCAAATTTTGCAAACTTTTTTTTGAAAAAAGTATGTATAATGAACACATGAAAAGCCACGAAAAAAATGAAGCTAGAATTGATACTATTCCTAATATTAAATTGCGCAAATTAAATGGTGTTTGGAAAAGTAAAACAAATATATTTAAATGTAACATTTGTTATCAAAAATGTCATAGTGAAAAGAATTTAGTAGAACATATGGAAACTCATGACAATTTTCAAACACAGTGTAATGATTGCTTAAAGTACATATCAGTTTCAGAATTGAGTAATCATATGCAACAAATACATAATAAACATTTATTTAAATGTCAGAAGTGTAATCTACAGTTTGAAAAACAACAACATTTAAACTGTCATTTAATTCATTGTTTAAAAAGCACTCCTACCAAATGGAATAAGGTTCGTGGTAAATGCAAGGTGAATTCAACAACTTGCTCTGCTTGTGGAATTGCTTTTAATAATTCTTTATCATTGAAAAATCATATGACTATTGGCTGTAAGCATTACACTTGTAAATATTGTGGACAATTTTTTAGTTCAAGGATTTTATGGCTAAGACATATGGATGTTCACGAAAAAGATGAACAGTGTGTAATCTTAACAGTAAATACCGATAAAACAACTACAATTAAAGAATATAATCAAACTAAAGTTGTAAATGATTCTTCTTGCAATACAAATGAAGGACAATTATTATCTGGAAATGTTATTGAAAAAAATAGTTCAGATCAAACTAATTTAGTGATCAGCAATGACCACATTGCACCACATTTAATGGTAAATAATATAAATTTAAATATTAATAAAGAAAAAAGATCATGTAAGAAAGAAGCAGTGAATAGCAATGAGTCAATAACACTAAATATATCACAAAATTTAATGATAGATGAGAGCAATACTAATTTAAAGCAAAATAAAATCTTAGTAAATATCAAAAAAAGAAATGGTTCAGGTCAAATAGATTTAATGAATAGCAATGCAACAATTGTATCGACTGCTTCAAATAATTCAATGGCAAATGATTGTCATATTAAAAATATAAAGCAAGAAAGATGTTTTAATGCAAATGCCAAAGACAGAAATATTTCACATCAAATGATCAACAATCAACCAACTATATCGACTGCTCCACATAATTCAATTGCAAACAATTGCTTTATTTTAAATATTAAGCAAGAAAAAGACTTATGTACAACTAACAATGAAACAAATAGTTCAGATCAAATAAATTTAGTTAACAGTAATGAATCAATAATTTCTACTGTTTCACACACTTCAATATCAAATAACGTCTTAAATATTAAGCAAGAAAAACACACGAGTACAAATGTTAGAGGAAGAACAAGTTCTGATAATATAGATTTAATGAATAGTAATGAATCAAATGATTCAATGGCATATCAAAACCCTATTAATATAGCTAATAGTCATATTGCATCTACCATTAGAGAAACACCTTATTTCTGTATTAGAAAATTGCCTAATATTAAAAGTGTATTTTGCAATGATGATAATGAACAGACATCGCAAAATAATGTTATATTTATATGTAGAATTTGTAGAAAATCTCCAGCTACAGATATACACTCATTTGCATTACACATGAGTGATCACAGTGAGTGCAACATGCATGAATGTATTGTTTGTGATAAGACATTTACCACTGTACTTCTTTGGACAAACCATATGACTTATCATCAACAGCAATTAGATTTAAATGTATCAGCAGTGCAATATACTCCTATAGAAACTGATCCTAGTACATCGGGCCCAATTAATTCTGGAAATATGGAACCTAAAGTTTGTACAACTTCAAGAAATAGGAAATTCAAGATATCTTCATCGAATGATTCATATTTAGATATAACAAGCTTGAATAATAGTGCCAATAAAATAAAAAATCAATATGACTGTAGTATATGTAAAAAAGTATTTCCTTCCAAGGTCACATTAAAAGTTCATCATCAAACTCATCATAATAAATCACAATCATTTTTCTGTAGGTATTGTGATAGAATATTTTCTGGAAGGGGTCAATGTACAAATCATGAAAAATCACACGTTGGCTTAAACAAATTAGTTTTACAAAATAATGAGGATAATTATCCAGAAGAAATTGTAGACCAAAACGACATAAGCATAGAAAATAATAACATTGATTCTGAGACAAGGTCAATAAAACATAAAAATAAAATAAAATTATCAACTAGAAAAAATTATTGTAATTTATGTAGAAGAAAATTTACAAAGCGCTGTTATTTCATAAATCATATGCAATTAAAACATAATATAAATACAAACTCATCAAAACAACTTACATCGATAAATTGCAAAAAGCCAATCATTCTATCTAAAAACATAGAGTTGACTAATAAATATGAAAACAAATTATCAGTTCCGGTAGATAGAGATTTGAATAATCAAAATGAAAAGAAATCAACATTTTGTACCATTTGTAATAAACATTTTGCACATCTTGGTGCCTTAACCAATCATATGAGTATTCATTCTGATCATAAACTATACAAATGTCAATATTGTTCTAGAAAATTTAGAAGAGAAAGTTCTTATATAATGCATGAGAAAAAGCATGTATTAAACAATGAAATTAAAAGTGCTCCCAATCAAAACAGGAATAATATAACAGTTGAAATTAATGAAAATTGTAACGATATTCAGTTAGTTCATAATCCAGTAGATGGAAATTCAAATGGTACAAATTTAATTAACATAAAAAATTTATGGTTTACCTGTGATGTGTGTGAGAAAAAATTTTCTACTCCATTCTTATTGAATGTACACCGAAAGTTACATCCTGATGTTGTACCATACATATGTAAGATTTGTAATAGATCATACTCATTGAAATTTCGATGGAATTGGCATTTAAAAGAACATTACATAAGACATTATAGTAAACAACATACTAATAATCTTAAATCAAATATTGGTAAACAAAAGATTGGATCTATACATCATCAAGATAAAATGAAATGTCGATATTGTAAAAAAGAATATAACTCAATATCTCAGTGGAAAAAACATATAACAATGAGCAAGGAATGTCGTCGCCATTGTAAAAGTAACCTTCCAGAATTTACATCAAATCAAGCTTCAAAGAAATCTACCAAATCTTGTCGATTTAAATGTAATATTTGTAAGAAAACATATAGTACCTCTTATAATCGATCAGTACATATAAAAAATGTTCACAATAAGTTAGATACAACAGTTTTAAATATTCATAATAATACAAGTTTGCAAAAAGAAAAACCAATAGAAATAATACAACAGAAACCAGTGGTTAAGAAACAAAATAGAAGTAATCATATTAATGGCACTAAATGTAAGTTATGTGGTAAAGTATATAGTAGTGCAGCTAATTTAGGTCGCCACATATCCATAATTCACACAAATAGTTATAAACCTATGACTTGTAATGTTTGTGGAAAGACATTTAAACACAAATTTTCTTATAGAGAGCATTTAAAAATTAAACATAAAAAAATATTTAAAAATTATGAAGAAATAAACTGTAAAAATAAAAGAACCAACAGGAAAATTATACCAATGAATAAAAAAGGAATTACGAAATACTTTTGCAAAATTTGTAAAATTAAGTTTGCAGACAATATTACATTACAAGAACATTCAAAGATGCATATAGTAAATATGTATAAGTGTAAAGACTGTGGTCAGCAATTTGAGACAAATGTTACTCTAGGTAATCATATTTTAGAAAACCATAGTGCTAATATTTCTACATTTAATAAAAATGAACATGTTGAGAATTACGAGAGTCAAAATAAATCTCTAAAAGTAATTAATAATAATCCTGCTCAATGTAAAGTTTGTTTGAAAATCTTAAAAGACCCTGGATATTTACATGAACACATGAGATTACACACAGGTGTCAAACCATTCAAATGTGATAATTGTAACACGGCTTTCAGATTTAAATCAAACTTAAGAATGCATCAGAAGAAAAATCTGCCATGTTATATCCCATAA
Protein Sequence: MTPMKDYIKVEVTGDADAVTSELYVENTIENPAWYTVEDNHVSLISENVEKVIKLETDILDDCMWESRIEISKDVANQNNVELSLETQNIPVDNIDINPESTSNKIFYCNICGKSFALNYLLKNHTKEHKRQVNFKINKCKYCGERFKLKFGLNRHIQKYHNHMYECKFCKLFFEKSMYNEHMKSHEKNEARIDTIPNIKLRKLNGVWKSKTNIFKCNICYQKCHSEKNLVEHMETHDNFQTQCNDCLKYISVSELSNHMQQIHNKHLFKCQKCNLQFEKQQHLNCHLIHCLKSTPTKWNKVRGKCKVNSTTCSACGIAFNNSLSLKNHMTIGCKHYTCKYCGQFFSSRILWLRHMDVHEKDEQCVILTVNTDKTTTIKEYNQTKVVNDSSCNTNEGQLLSGNVIEKNSSDQTNLVISNDHIAPHLMVNNINLNINKEKRSCKKEAVNSNESITLNISQNLMIDESNTNLKQNKILVNIKKRNGSGQIDLMNSNATIVSTASNNSMANDCHIKNIKQERCFNANAKDRNISHQMINNQPTISTAPHNSIANNCFILNIKQEKDLCTTNNETNSSDQINLVNSNESIISTVSHTSISNNVLNIKQEKHTSTNVRGRTSSDNIDLMNSNESNDSMAYQNPINIANSHIASTIRETPYFCIRKLPNIKSVFCNDDNEQTSQNNVIFICRICRKSPATDIHSFALHMSDHSECNMHECIVCDKTFTTVLLWTNHMTYHQQQLDLNVSAVQYTPIETDPSTSGPINSGNMEPKVCTTSRNRKFKISSSNDSYLDITSLNNSANKIKNQYDCSICKKVFPSKVTLKVHHQTHHNKSQSFFCRYCDRIFSGRGQCTNHEKSHVGLNKLVLQNNEDNYPEEIVDQNDISIENNNIDSETRSIKHKNKIKLSTRKNYCNLCRRKFTKRCYFINHMQLKHNINTNSSKQLTSINCKKPIILSKNIELTNKYENKLSVPVDRDLNNQNEKKSTFCTICNKHFAHLGALTNHMSIHSDHKLYKCQYCSRKFRRESSYIMHEKKHVLNNEIKSAPNQNRNNITVEINENCNDIQLVHNPVDGNSNGTNLINIKNLWFTCDVCEKKFSTPFLLNVHRKLHPDVVPYICKICNRSYSLKFRWNWHLKEHYIRHYSKQHTNNLKSNIGKQKIGSIHHQDKMKCRYCKKEYNSISQWKKHITMSKECRRHCKSNLPEFTSNQASKKSTKSCRFKCNICKKTYSTSYNRSVHIKNVHNKLDTTVLNIHNNTSLQKEKPIEIIQQKPVVKKQNRSNHINGTKCKLCGKVYSSAANLGRHISIIHTNSYKPMTCNVCGKTFKHKFSYREHLKIKHKKIFKNYEEINCKNKRTNRKIIPMNKKGITKYFCKICKIKFADNITLQEHSKMHIVNMYKCKDCGQQFETNVTLGNHILENHSANISTFNKNEHVENYESQNKSLKVINNNPAQCKVCLKILKDPGYLHEHMRLHTGVKPFKCDNCNTAFRFKSNLRMHQKKNLPCYIP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01304354; iTF_01329188;
90% Identity: iTF_01329188;
80% Identity: -