Sgrm004808.1
Basic Information
- Insect
- Schizaphis graminum
- Gene Symbol
- Lac
- Assembly
- GCA_003264975.1
- Location
- QEWZ01006974.1:269103-417974[+]
Transcription Factor Domain
- TF Family
- CSL
- Domain
- BTD domain
- PFAM
- PF09270
- TF Group
- Beta-Scaffold Factors
- Description
- Members of this family of DNA binding domains adopt a beta-trefoil fold, that is, a capped beta-barrel with internal pseudo threefold symmetry. In the DNA-binding protein LAG-1, it also is the site of mutually exclusive interactions with NotchIC (and the viral protein EBNA2) and co-repressors (SMRT/N-Cor and CIR) [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.00014 0.72 10.5 0.0 40 97 16 73 7 92 0.91 2 2 7.4e-05 0.39 11.3 0.0 31 89 111 169 106 187 0.80
Sequence Information
- Coding Sequence
- ATGCCAAAGTTTGGTGAAGATTTGAATAATGTAACGGTGCCAGTTGGCCGAGAAGCTAAATTTGTATGCAACGTCGAAGGATTAGCAACTTACAAGgtTGCTTGGCTAAGAGTGGACACCCAAACTATATTGACCATTCATAGTCACGTGATTACAAAGAACCATCGGATAGCGGTAACTCACAGCGATCATCGAATATGGTATCTTCATATACGGGATGTCAGGGAAGCCGACAGAGGATGGTATATGTGCCAAATCAACACCGACCCAATGAAGAGTCAACAGGGTTACTTGCAAGTGGTTGTACCTCCGGATATATTGGACTACCCGACTAGCACCGACATGGTAGTGAGGGAAGGAGGTAATGTCTCGATGCAGTGTGCTGCTTCCGGATTTCCTAATCCCAGTATCACTTGGAGAAAGGAAGGTGGCCAGTCGATATGCTTAAACCCCAATACCGAAGTATCCGCAGTGAACGGGCCGTGGTTAAACGTATCAAAAGTTAACCGTCTACACATGGGTGCATATTTGTGCATAGCGTCTAACGGGATTCCACCGTCAGTTAGCAAACGTATCATGCTCATCATACAATTCCCTCCCATGATATGGATACAAAATCAGCTTGTCGGTGCGCAAGAAGGTCAATCGGTCACTTTGGAATGTACGTCCGAAGCGTTTCCCAAATCAATCGATTACTGGACAAAAGATAAAACGACCATCATATCAAAcgGCACCAAGTACTTCACAGACCTTAAGGATAACGTGTACAAAACGTACATGAAACTGACGATAATATCGGTAACGTTGTCCGATTACGGCACGTACCAGTGTGTTTCGAAAAACTCGTTGGGCGACACAGACGGCACAATTAAGCTTTACGcgGTGCCTAAgccgacgacaacgacgacgacaacgactaCTACTGCGCCTACGACCACTACGACCACTACTACTACGACTAAGATGGCCACCACGATGACCGGTGGCTGGTGGACGACAGAGGTGCCTAAAAAATCATCGAAATTCGGTGGAAAAGCTCCTGCCAACGAAGTGGACCGTAGACCGTCGAAGAAGACCGGAAAACACCAAGACGCCGAGGCCGCCAGCAACAAGAAGGACGATCCGACCGAAGGAGACCAACAGCAGAGTTCGCGGGCAGCAgccgcagccgccgccgccgccgGCGACAACAATGGGCGGCCGGCTTTGAGCAAAAAGCATAAAAACGGATCTGCCAGCGTCCATCCCGCGCTCGGTGTGACGGCCGCAGTTtggataataataacacaaaggATTTTTCCGTTATGA
- Protein Sequence
- MPKFGEDLNNVTVPVGREAKFVCNVEGLATYKVAWLRVDTQTILTIHSHVITKNHRIAVTHSDHRIWYLHIRDVREADRGWYMCQINTDPMKSQQGYLQVVVPPDILDYPTSTDMVVREGGNVSMQCAASGFPNPSITWRKEGGQSICLNPNTEVSAVNGPWLNVSKVNRLHMGAYLCIASNGIPPSVSKRIMLIIQFPPMIWIQNQLVGAQEGQSVTLECTSEAFPKSIDYWTKDKTTIISNGTKYFTDLKDNVYKTYMKLTIISVTLSDYGTYQCVSKNSLGDTDGTIKLYAVPKPTTTTTTTTTTAPTTTTTTTTTTKMATTMTGGWWTTEVPKKSSKFGGKAPANEVDRRPSKKTGKHQDAEAASNKKDDPTEGDQQQSSRAAAAAAAAAGDNNGRPALSKKHKNGSASVHPALGVTAAVWIIITQRIFPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01305313; iTF_01303952; iTF_01328380;
- 90% Identity
- iTF_01328380;
- 80% Identity
- iTF_01328380;