Rpad006478.1
Basic Information
- Insect
- Rhopalosiphum padi
- Gene Symbol
- Lac_1
- Assembly
- None
- Location
- scf7180000007811.2164633:1769943-1834264[-]
Transcription Factor Domain
- TF Family
- CSL
- Domain
- BTD domain
- PFAM
- PF09270
- TF Group
- Beta-Scaffold Factors
- Description
- Members of this family of DNA binding domains adopt a beta-trefoil fold, that is, a capped beta-barrel with internal pseudo threefold symmetry. In the DNA-binding protein LAG-1, it also is the site of mutually exclusive interactions with NotchIC (and the viral protein EBNA2) and co-repressors (SMRT/N-Cor and CIR) [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.00011 0.72 10.5 0.0 40 97 16 73 7 92 0.91 2 2 5.1e-05 0.34 11.6 0.0 31 89 111 169 106 187 0.80
Sequence Information
- Coding Sequence
- ATGCCAAAGTTTGGTGAAGATTTGAATAATGTAACGGTGCCAGTTGGCCGAGAAGCTAAATTCGTATGCAACGTCGAAGGATTAGCAACTTACAAGGTTGCTTGGCTAAGAGTGGACACCCAAACTATATTGACCATTCATAGTCACGTGATTACAAAGAACCATCGGATAGCGGTAACTCACAGCGATCATCGAATATGGTATCTTCATATACGGGATGTCAGGGAAGCCGACAGAGGATGGTACATGTGCCAAATCAACACCGACCCAATGAAGAGTCAACAGGGTTACTTGCAAGTGGTTGTACCTCCGGATATATTGGATTACCCGACTAGCACCGACATGGTAGTGAGGGAAGGAGGTAATGTCTCGATGCAGTGTGCTGCTTCCGGATTTCCCAATCCCAGTATCACTTGGAGAAAAGAAGGCGGACAGTCGATATGCTTAAGCCCCAATACCGAAGTATCCGCAGTGAACGGACCGTGGTTAAACGTATCAAAAGTCAACCGTCTACACATGGGTGCATATTTGTGCATAGCGTCTAACGGGATTCCACCGTCAGTTAGCAAACGTATCATGCTCATCATACAATTCCCTCCCATGATATGGATACAAAATCAGCTTGTCGGTGCGCAAGAAGGTCAATCGGTCACTCTGGAATGTACGTCCGAAGCGTATCCCAAATCAATCGAATACTGGACAAAAGACAAAACGACCATCATATCAAACGGCACCAAGTACTACACAGACCTTAAGGATAACGTGTACAAAACGTACATGAAACTGACGATAATATCGGTAACGTTGTCCGATTACGGCACGTACCAGTGTGTTTCGAAAAACTCGTTGGGCGACACAGACGGCACAATTAAGCTTTACGCGGTGCCTAAGCCGACTACAACGACGACAACGACGACTACTACTGCGCCTACCACCACTACGAGTACTACTACTACGACTAAGGTGGCCACCACGGTGACCGGTGGCTGGTGGACGACTGAGGTGCCTAAAAAATCGTCGAAATTCGGTGGAAAAGCTCCTGCCAACGAAGTGGACCGGAGACCGTCGAAGAAGACCGGAAAACACCAAGACGCCGCCGAGGACGCCGGTGACAAGAAGGACGATCCGACCGGAGGAGACCAACAGCAGAGTTCGCGGGCAGCAGCCGCAGCCGCCGCCGGCGACAACAATGGGCGGCCGGCTTTGAGCAAAAAGCATAAAAACGGATCTGCCAGCGTCCATCCCGCGCTTGGTGTGACGGCCGCAGTTTGGATAATAATAACACAAAGGATTTTTCCGTTATGA
- Protein Sequence
- MPKFGEDLNNVTVPVGREAKFVCNVEGLATYKVAWLRVDTQTILTIHSHVITKNHRIAVTHSDHRIWYLHIRDVREADRGWYMCQINTDPMKSQQGYLQVVVPPDILDYPTSTDMVVREGGNVSMQCAASGFPNPSITWRKEGGQSICLSPNTEVSAVNGPWLNVSKVNRLHMGAYLCIASNGIPPSVSKRIMLIIQFPPMIWIQNQLVGAQEGQSVTLECTSEAYPKSIEYWTKDKTTIISNGTKYYTDLKDNVYKTYMKLTIISVTLSDYGTYQCVSKNSLGDTDGTIKLYAVPKPTTTTTTTTTTAPTTTTSTTTTTKVATTVTGGWWTTEVPKKSSKFGGKAPANEVDRRPSKKTGKHQDAAEDAGDKKDDPTGGDQQQSSRAAAAAAAGDNNGRPALSKKHKNGSASVHPALGVTAAVWIIITQRIFPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01328381;
- 90% Identity
- iTF_01328380;
- 80% Identity
- -