Basic Information

Insect: Scaptomyza tumidula
Gene Symbol: -
Assembly: GCA_035044465.1
Location: JAWNNW010000320.1:1833068-1838022[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 0.00012 0.0089 16.4 0.6 1 23 225 247 225 247 0.98

2 26 0.19 14 6.4 3.3 1 23 253 275 253 275 0.98

3 26 0.39 28 5.4 0.8 2 23 307 328 306 328 0.96

4 26 0.044 3.1 8.4 1.6 1 23 402 425 402 425 0.93

5 26 0.92 65 4.2 0.3 2 22 437 457 436 457 0.94

6 26 2.1 1.5e+02 3.2 0.5 1 20 466 485 466 487 0.91

7 26 0.079 5.6 7.6 0.6 2 23 501 522 500 522 0.97

8 26 0.00092 0.065 13.7 0.4 1 23 596 619 596 619 0.95

9 26 0.072 5.1 7.7 0.0 1 22 628 649 628 649 0.95

10 26 0.0081 0.58 10.7 1.6 1 23 658 681 658 681 0.96

11 26 0.00018 0.013 15.9 0.4 2 23 701 722 700 722 0.97

12 26 1.1e-05 0.00078 19.7 5.5 1 23 728 750 728 750 0.98

13 26 0.031 2.2 8.9 2.5 1 23 899 922 899 922 0.95

14 26 0.034 2.4 8.7 2.2 1 22 929 950 929 950 0.95

15 26 0.077 5.4 7.6 1.7 1 23 959 982 959 983 0.91

16 26 7.9e-05 0.0056 17.0 2.0 1 23 1008 1030 1008 1030 0.97

17 26 6.2e-05 0.0044 17.4 2.4 1 23 1037 1059 1037 1059 0.98

18 26 0.0082 0.58 10.7 0.0 2 20 1086 1104 1085 1106 0.94

19 26 0.016 1.1 9.8 2.6 1 23 1151 1174 1151 1174 0.96

20 26 0.0017 0.12 12.9 2.1 1 23 1211 1234 1211 1234 0.97

21 26 0.013 0.94 10.0 3.1 1 23 1256 1279 1256 1279 0.97

22 26 1.3e-05 0.0009 19.5 0.1 2 23 1301 1322 1300 1322 0.95

23 26 4.3e-05 0.0031 17.9 2.9 1 23 1328 1350 1328 1350 0.99

24 26 4.7e-06 0.00034 20.9 1.9 1 23 1356 1378 1356 1378 0.97

25 26 5.4e-08 3.8e-06 27.0 2.4 1 23 1384 1406 1384 1406 0.99

26 26 0.00064 0.046 14.2 0.3 1 21 1412 1432 1412 1436 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	0.00012	0.0089	16.4	0.6	1	23	225	247	225	247	0.98
2	26	0.19	14	6.4	3.3	1	23	253	275	253	275	0.98
3	26	0.39	28	5.4	0.8	2	23	307	328	306	328	0.96
4	26	0.044	3.1	8.4	1.6	1	23	402	425	402	425	0.93
5	26	0.92	65	4.2	0.3	2	22	437	457	436	457	0.94
6	26	2.1	1.5e+02	3.2	0.5	1	20	466	485	466	487	0.91
7	26	0.079	5.6	7.6	0.6	2	23	501	522	500	522	0.97
8	26	0.00092	0.065	13.7	0.4	1	23	596	619	596	619	0.95
9	26	0.072	5.1	7.7	0.0	1	22	628	649	628	649	0.95
10	26	0.0081	0.58	10.7	1.6	1	23	658	681	658	681	0.96
11	26	0.00018	0.013	15.9	0.4	2	23	701	722	700	722	0.97
12	26	1.1e-05	0.00078	19.7	5.5	1	23	728	750	728	750	0.98
13	26	0.031	2.2	8.9	2.5	1	23	899	922	899	922	0.95
14	26	0.034	2.4	8.7	2.2	1	22	929	950	929	950	0.95
15	26	0.077	5.4	7.6	1.7	1	23	959	982	959	983	0.91
16	26	7.9e-05	0.0056	17.0	2.0	1	23	1008	1030	1008	1030	0.97
17	26	6.2e-05	0.0044	17.4	2.4	1	23	1037	1059	1037	1059	0.98
18	26	0.0082	0.58	10.7	0.0	2	20	1086	1104	1085	1106	0.94
19	26	0.016	1.1	9.8	2.6	1	23	1151	1174	1151	1174	0.96
20	26	0.0017	0.12	12.9	2.1	1	23	1211	1234	1211	1234	0.97
21	26	0.013	0.94	10.0	3.1	1	23	1256	1279	1256	1279	0.97
22	26	1.3e-05	0.0009	19.5	0.1	2	23	1301	1322	1300	1322	0.95
23	26	4.3e-05	0.0031	17.9	2.9	1	23	1328	1350	1328	1350	0.99
24	26	4.7e-06	0.00034	20.9	1.9	1	23	1356	1378	1356	1378	0.97
25	26	5.4e-08	3.8e-06	27.0	2.4	1	23	1384	1406	1384	1406	0.99
26	26	0.00064	0.046	14.2	0.3	1	21	1412	1432	1412	1436	0.91

Sequence Information

Coding Sequence: atgTTGCTGACGAATATTTGTCGTACATGTGCGTTACAAGACGACAATTTGTTGGCGCTGTCATCGCGCAGTAAAAAACACCCTGAGAACAATATTTGCGACATTTTGAACGAATTAACACAAAACGATCCGTTGTTGGAGCATTCAGATGATAATCTGCCGCAGCATCTGTGCGGCCCATGTTTAAGCCAGCTGGAAGCTGCCTATGCATTTGTAGTTCAGGCTCGGCAAGCTCAGAAGCTACTCTTGCTGCAGCTACGCAAAGGATTGCAGACAAAGTGTTTGGAAGAAATGCCCATTGATATTTCACTAGAGCACATCAAAACCGAAACAGACATTAACCTAGATGCTGAGACCAACGTACAAATTAATGAGCAATTGGAGGACGAGAATGCCGATGATGATAAAGAGAAGGGGTTTTCTGCTGTGTCTGCCACTGGCTTCAAATGCCAACCAACAAGTGATAGCAATAGCAGTGAAGAAAACGTACTAAAcgacGATGCTGAGTTCAAGCCCCCGCAGCTTCGGCGCAGTGCACGACGATCCAAACCAATCACGTTAAGCGAAACTGAGTCGACATGTGACCAAAAAAAGCTTCCGCCACCAGTCAAGCGTGGTCGTGGGCGTCCCGCACGTCAAAACACAACGGAAACCCTCAACGAGAATGGCCGATACATGTGTAATGTTTGTGGCAAGACGTATTCGTGGTATCGCGACTTGCAGCGCCATGAGCGCATACATTTTGAGCAGGCAGCCTATGTGTGCCAGAGTTGCGACAAGAAATTCTTGCGCAAAGATAAGTACATGTTCCATTTGCGAACGCACGAGAAGCAAGCAGTTAAAGTACAGGCGTTGCAGATGAGCAGTGAATGGCGCTTCGCTGAGCGTCTATACAGCTCAGGCCGCCTGAAGCGTGTGGAGTGCAAGCTGTGTGGTTTGAAGTGCCAGCGCATACAGGAGATGCGTGAGCATTTGGCAAGCCATGTCAACATTGAGACATTGTCAAATCTCAGTTTGGACAATGATGTGATCAGGGAGCAATTTGGCACTCAATGGGATTTACAACAGATTAAGCAACAGGTGTGCATGCAAATATCGAAAGGTCGCGACCAGCTGGATAACTTTTGTGCTATTGTTAATGCGTACGGCTATGAGATGTGCCTTAGCGACTCGGATGAGGAATCACCTGGCGTATCGGCTCAATATAAATGCCTGCCCTGCAACGCCAGCTTCACACGCAAACATCGCCTTATTCAACACACGTTAGAGGAGCACAcgcaaacaaacgaaactgAGACGCCTTGGGTGCGTTGCAATATCTGCCAAATTGGCTTTGTTTGCGTAAATCTGCTGGAGCAACATCAGCGCACACAATGCCTCAATCCACTTAAGCGTTACAGTTGCAACAATTGTCCCGGCAAATTCATTTGGCTTCAAAATCTACAGCAACACGCGTGCAGTAGACTTCAACAGGATCAGCCAAAGGATTATCGGAAAATTCAGTGTTGTCTGTGCGATGCCAAACTAAGCAGCATGGTAGCTTTGCGATCACATTTACTCACGCATCGCGATGGACACACTGGCATCGATCCGCAGCAGCACGCTGCCTTCTTTCGCACATACTTTCGAGATGATATCGATTGCAGTCTTTCAGAGCTAAGTACACGCATCGCTGACGACTTCCAATCACAAAATTATGGACGATATTTTAATGCCTGCACGGGCAGCGGCCAGGAATTGGATATCAATGATTCCGACACTGCTTTGAGTGATGCATCCAGTATGCACATATGTGGCGTGTGTGGCGAGAGTACAGAACGTCTAGTCCAGTTGCAAAAACATCAGGAAAGTAAACACAATGAGCTCGACAAAAGATTGCCTTACATCTGCGCTGATTGTGGCTCGGGTTTTGTGGCCGACTCGCTATTGCAGCAACATCGTCGTCGTATTTGCGCCAAGCAGCAAGCTAAATACAATTGCTCGGAATGCAGCCAGCGGTTTTACTGGCTCTCCAACTATGAACGACACATGCAGCTGAAGCATGCTGTTAAGCATGCGGGCGAGGCTCAGATTCagacacacaagcaaacaacaaagttgcaaTGCACCGAATGCGAAAAGgTATTTATATGGCCCAAGGATCTGACGCGTCACAAGCGGATGCATCAGTCACAGGTGCAGTTTGAATGCACTTTTTGTGAGCGCAAGTTCCATCGTAAGGATAACCTCAAGTCACATATGCGAATGCACGGCGAACAACAATTGGATGCGTTTACTTTTACAAGTGAGCAACGGGACACTATGCAACAGAGCATGCCATTGGTATTGAGCCAGTTGTGTCGTCCCAATGGCTGCAAGCAGATTCAGTGCATGATTTGCCTATCCCAGCATACAAAGATCTCCGATTTGCGAACGCATTTAACTAGCCATCAGTTTGCGCTACAGTTTTCTGGGGAACGTGGCCAACCAGAGAGCATATCCAGCATTAGTCGTAGCCTCTATCCTGAGCTAAGTGCTCCTTTGGATAAGCATAACTTAATAATGCGCATACAGAGTGATTTAGCTAAAGGTCTGGAATTTGAAAGATTTATTTCGATTACCAACGAGGCAGGCAATGAGTTAAGCTTAGATAGCAGCGAAACAGATACGGATTCGGATTCAGCAGACAACAAGCAGAGCAGCTTTGGACGCCAGTACACCTGTGAGCTGTGCCAGGTTCGCGTGACTCGCAAGCATAAGCTCTATTCCCATCAGCTGGAGCAGCACACGTGGGAGCAGGCAGCACACGTTTGCAGCCACTGCCAGGCAAGATTTGTGAGTGAACAGCTGCTGGACCATCATTATCGTACCCTCTGCCGTAACGCTCAGCGTCGTTTTCTCTGTCGCAAGTGTCCATTACGCTTTCGCTGGCGCGACAATCTTAAACAACACACTGACGTTGCGCATCATGATGGGAAATTCCAAGGACAGGGCAGTCTGGCAACTCAGCTGAATGGTGCACGAGTGCTTCCGGTTGTTAGCTACGACTGTATGGAGTGCAAGCGTAGcttcaaaatgcaaaaggaTCTCACAAGACACACGCTAATGCATACCCAAGAGTCGAGCATCTATCGTTGTCATTGGTGCGCACGTCGCTTCTATCGCGAGTCGAATCTGCTGCAGCACATTGAGCGTCATGGCATCAGTGCCGATCAGCTGCCCTATGCGGAGGCCCTGCTCACTGCCAGTCGTCATCCGCATGGTCAGAAGTGCATTCAGTGTAAAGTGTGCGAAATATCGTTTACCAGCATTGCGGCACTGCGTTCCCATCTGGGATCAGCACCAGTTGGCACACATCATGCAATTGAATCTATGCTCAACTACTCCATTACTGATCAGTTGGGCTATGAGCTGCACTTGGAGGACTCGGAAACGGATGAGGAGGCCAAGCCGGATGGTACGCCGGCACATTACACTTGTGGCATGTGCCAGCTGCGATGTATGCGCAAATTTGagctgcaacagcatcagcaggcCATGCATCGTCTAGAGCGAATCAGTGAGGGATGCCAGCTTTGCATCTTCAAGAGCGTTTCGCCGGATCTGATTGCCTATCATCGCCGCGTTTTGTGCGGCAATACGGAGAAACAGTTCAAATGCTCAAAATGTAGCTACAAATTTATGTGGCAATCGAATCTTGAGCAGCACATGCAGCTACAGCATCCCAGTAGCGGGGAGCCGACTTCAATGCCCGTGCCAGACAATGGCAACTCTGAGAGCCAAATCTTTCAGTGCGGTCAGTGTCCAAGTAAATATAATCGTAAGGATCGCCTTACAGCGCATGTGAAAAAATGTCATGCAAATGGCGCAACAGGCTCTAAAAAACCACCGGCTACACCAGCCAAGCAACAAAAGAGTTTTTTGTGCGCTTTTTGTGGCAAAGCGGTAAGCTCCTCGTCCAATTTAATTATACACATACGTCGACACACGGGAGAGAAGCCATTCAAGTGCGATTATTGTGACATGGCCTTTCCACGTTCCTCTGATCTCCAATGCCACAGACGGACCCACACCGGAGAGCGACCTCATGTTTGCACCGTCTGCCAGAGGGGCTTCGCTCGCTCCTACAAGCTTCAGCAGCACATGCGCATCCACAATGGCGAGCGACCCTACAAGTGTACCTACTGCGACAAGAGCTTCACCCAGTCCAATGATCTAACGCTCCACATACGTCGACATACGGGCGAACGTCCCTATCAGTGCAACACATGCGGCGAGAGATTTATTCAGGGTACAGCTCTGAAAAATCATCGTCTTCAGAATGGTCACATCGAAACGGAAGTCGAAAAAGTAAAAGATGACTGA
Protein Sequence: MLLTNICRTCALQDDNLLALSSRSKKHPENNICDILNELTQNDPLLEHSDDNLPQHLCGPCLSQLEAAYAFVVQARQAQKLLLLQLRKGLQTKCLEEMPIDISLEHIKTETDINLDAETNVQINEQLEDENADDDKEKGFSAVSATGFKCQPTSDSNSSEENVLNDDAEFKPPQLRRSARRSKPITLSETESTCDQKKLPPPVKRGRGRPARQNTTETLNENGRYMCNVCGKTYSWYRDLQRHERIHFEQAAYVCQSCDKKFLRKDKYMFHLRTHEKQAVKVQALQMSSEWRFAERLYSSGRLKRVECKLCGLKCQRIQEMREHLASHVNIETLSNLSLDNDVIREQFGTQWDLQQIKQQVCMQISKGRDQLDNFCAIVNAYGYEMCLSDSDEESPGVSAQYKCLPCNASFTRKHRLIQHTLEEHTQTNETETPWVRCNICQIGFVCVNLLEQHQRTQCLNPLKRYSCNNCPGKFIWLQNLQQHACSRLQQDQPKDYRKIQCCLCDAKLSSMVALRSHLLTHRDGHTGIDPQQHAAFFRTYFRDDIDCSLSELSTRIADDFQSQNYGRYFNACTGSGQELDINDSDTALSDASSMHICGVCGESTERLVQLQKHQESKHNELDKRLPYICADCGSGFVADSLLQQHRRRICAKQQAKYNCSECSQRFYWLSNYERHMQLKHAVKHAGEAQIQTHKQTTKLQCTECEKVFIWPKDLTRHKRMHQSQVQFECTFCERKFHRKDNLKSHMRMHGEQQLDAFTFTSEQRDTMQQSMPLVLSQLCRPNGCKQIQCMICLSQHTKISDLRTHLTSHQFALQFSGERGQPESISSISRSLYPELSAPLDKHNLIMRIQSDLAKGLEFERFISITNEAGNELSLDSSETDTDSDSADNKQSSFGRQYTCELCQVRVTRKHKLYSHQLEQHTWEQAAHVCSHCQARFVSEQLLDHHYRTLCRNAQRRFLCRKCPLRFRWRDNLKQHTDVAHHDGKFQGQGSLATQLNGARVLPVVSYDCMECKRSFKMQKDLTRHTLMHTQESSIYRCHWCARRFYRESNLLQHIERHGISADQLPYAEALLTASRHPHGQKCIQCKVCEISFTSIAALRSHLGSAPVGTHHAIESMLNYSITDQLGYELHLEDSETDEEAKPDGTPAHYTCGMCQLRCMRKFELQQHQQAMHRLERISEGCQLCIFKSVSPDLIAYHRRVLCGNTEKQFKCSKCSYKFMWQSNLEQHMQLQHPSSGEPTSMPVPDNGNSESQIFQCGQCPSKYNRKDRLTAHVKKCHANGATGSKKPPATPAKQQKSFLCAFCGKAVSSSSNLIIHIRRHTGEKPFKCDYCDMAFPRSSDLQCHRRTHTGERPHVCTVCQRGFARSYKLQQHMRIHNGERPYKCTYCDKSFTQSNDLTLHIRRHTGERPYQCNTCGERFIQGTALKNHRLQNGHIETEVEKVKDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01323519;
90% Identity: iTF_01321321;
80% Identity: -