Stum002931.1
Basic Information
- Insect
- Scaptomyza tumidula
- Gene Symbol
- ttk
- Assembly
- GCA_035044465.1
- Location
- JAWNNW010000442.1:222733-226589[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.4e-19 9.5e-16 57.2 0.0 2 45 603 647 602 647 0.97
Sequence Information
- Coding Sequence
- ATGTCTGTGCAGCAATTCTGCCTGCGCTGGAACAATCACCAGCCCAACTTCATATCGGTTTGCTCATCCCTGCTGCACAATGGAACGCTAGTGGATGTCACACTCGCCGCGGAGGGCCGCCAGCTGCAGGCCCACAAAATTGTGCTCTCCGCGTGCAGCTCCTATTTTCAGGCGCTCTTTACAACGAATCCGTGCCAGCATCCGATTGTCATACTGAAGGACGTGCAGTACGATGATCTCAAGACGATGGTGGATTTCATGTACTACGGCGAGGTGAATGTGTCGCAGGAGCAGTTGCCACACATTCTCAAAACGGCTGAAATGCTCAAGATCAAGGGTCTTGCCGAAATGCCCACAGATCCGGCCAACCTCACCAAGTCCGACAGCAAATCCTCCAGCGAGGCGACCGAGTTACTCGGCCAAGCTGGTGGTAATGTTACCGGAACAAATGCTGGGGCTGCCGCGTCCAGTCTGGGTGCAGctagtggcagcagcagtgctGGCGATTCACTCTGGAGCAGCAGCGAAGCTCAGCAGtttcagcagcatcagcaacagctgcagcaacaactgcagcatcaacagcaggcccaacagcaacaacaacagcagcaggcgcaacagcaacaacagcagcagcagcagcaacaacaacaacagcagcaacaacaacaacagcagcaacagcatcatcatcaccatcatcatcaccaagcacaacaacaacagcagcaacaaacgagCAACCAAGCGCAGAGCTCACAAACGCATCACCATCAGCTTAGGCGAACGCCATCGCCGCTAAGTACTGGCACCTCGCCTGCCACGCGGCGCAAACGTTTGCGTAAATCCTCGAATAACGGTTCTGGTGATCGAAACAACTCAGAGGAGCAGCACAGCAGCTCCCTGGAAGCAGCTGGCGCCGCTGGCAGCGCTGCTGGGCTTAGTCTGGCACAGATGAGTCAAATGACGTTTGGTGGTGGATCGAGTAATAATGCCTCTGCGGCATTGGGTAGTCTCTCGGGACACTCTTTGCATGCGGCAAAACTGCTGAAGGAGTCAGCGAGCACTGAGCTAGAACAACAGCCACAGGATTCAGATTTGGACGATGCGCACggacacatacatatgcaaattAAGCCTGAAGTGGACATCGGCAATGTGAATCAATCGATGCCTCTGGACATTTCTGGCACAACGACACCATCGGAACACGACGCGCCAAATTCACAATCTTCGCACTCCGGTCTGCAATGGACAGTTGTTGATTCAAACTATTCGCGCTTCTCGATGCCCGCCTGTCAGTCCAACTTgattggcaatggcaacggtaACGGCAATCAAAACAGCGGTGCGAATAGCAGTGCCGGCGTCGGTACCGCCGGCACCACTGACcagcgtcaacagcagcagcagcagcacgaaGCGCAGCAGCAAGccacgcaacagcagcaacaacagcatctgcagcagctgcattatcagcagcagcaacaacaacaacagggcGCAACAACTGGTCAGGCGTACTCGTCGCAAATTATAACCGTGAATAATCTGGTCAGTGGTTATGCAACGGCTGCGCAAAATCTATCGCCCACTTCGCCTAACGAATCCAATATGGTGCAGTCCGTCTACAGTCAGGGTCCGACGCCCACCCAGTCACCTGTCCACTCAGGCGTTGGTGGAGGTGGCGGTAGTAGTGCGGGTGGAAGTGCGGGCAGTGCTGGTGGCGGTGGCAATAGCAGCAGTGGCGGTGCTAGCAGTCAAGTTGTTAAACGCAAGCGATCTGTAAATCCACAAGGTGATGAGAATTTTATCAGAGCCTTGGAAGCAGTGCGTACTGGCGGCATCGGATTCTGCAAGGCAGCTCGCCTATACGGTGTGAACAATCGAACGCTGTGGCTGGAGTATAAGAAACGCGGCTATCCGGTGTCAAGACCAAGCATTAAGGCGCGCGTGGTGAAGCAGGAGCCCAATCTATCGCCATCGCCAACACCATCCACAAATCCCGGGGACGATACGACCAACGAAACATATGATCATCtaactgctgcagctgttgccgcAGCTCAAACGGCTGCGCTTAACATGCAGATACCGCCGCAGACCGAGACACCGACACCATCGCTTATGTGTGCGCCGCATCATACGGGCACAGCGACAACCACCACAACCGGTGGTAGCAACACGCATCCAGCCATCGGCGTTATGAGCCTCTTCGATGCTCGCTACATGGACTCACCGACCAGTGTGCATACCATGTCTCGGCAGCGGTATATCGATGCGACGGGCGCTGGTGGAGCTGCCGCTGCGTCGGGAGCTGGCACAATCAATGTTAATCCAGCCGCTGCTATGAATCTACAGAGTATTAACTTCAACACAATATAG
- Protein Sequence
- MSVQQFCLRWNNHQPNFISVCSSLLHNGTLVDVTLAAEGRQLQAHKIVLSACSSYFQALFTTNPCQHPIVILKDVQYDDLKTMVDFMYYGEVNVSQEQLPHILKTAEMLKIKGLAEMPTDPANLTKSDSKSSSEATELLGQAGGNVTGTNAGAAASSLGAASGSSSAGDSLWSSSEAQQFQQHQQQLQQQLQHQQQAQQQQQQQQAQQQQQQQQQQQQQQQQQQQQQQQHHHHHHHHQAQQQQQQQTSNQAQSSQTHHHQLRRTPSPLSTGTSPATRRKRLRKSSNNGSGDRNNSEEQHSSSLEAAGAAGSAAGLSLAQMSQMTFGGGSSNNASAALGSLSGHSLHAAKLLKESASTELEQQPQDSDLDDAHGHIHMQIKPEVDIGNVNQSMPLDISGTTTPSEHDAPNSQSSHSGLQWTVVDSNYSRFSMPACQSNLIGNGNGNGNQNSGANSSAGVGTAGTTDQRQQQQQQHEAQQQATQQQQQQHLQQLHYQQQQQQQQGATTGQAYSSQIITVNNLVSGYATAAQNLSPTSPNESNMVQSVYSQGPTPTQSPVHSGVGGGGGSSAGGSAGSAGGGGNSSSGGASSQVVKRKRSVNPQGDENFIRALEAVRTGGIGFCKAARLYGVNNRTLWLEYKKRGYPVSRPSIKARVVKQEPNLSPSPTPSTNPGDDTTNETYDHLTAAAVAAAQTAALNMQIPPQTETPTPSLMCAPHHTGTATTTTTGGSNTHPAIGVMSLFDARYMDSPTSVHTMSRQRYIDATGAGGAAAASGAGTINVNPAAAMNLQSINFNTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00490703;
- 90% Identity
- iTF_00530876;
- 80% Identity
- iTF_01327966;