Stum011544.1
Basic Information
- Insect
- Scaptomyza tumidula
- Gene Symbol
- -
- Assembly
- GCA_035044465.1
- Location
- JAWNNW010000702.1:280729-290266[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 9.7e-12 1.7e-08 34.0 0.0 1 40 541 581 541 584 0.90 2 4 5.4e-14 9.4e-11 41.2 0.1 2 39 596 633 595 636 0.94 3 4 1.2e-17 2.2e-14 52.9 0.0 1 45 650 695 650 695 0.98 4 4 1.3e-19 2.2e-16 59.2 0.0 1 43 702 745 702 746 0.97
Sequence Information
- Coding Sequence
- ATGTCTGGGCGGTCGGAGGGTCTTCTACGCACCGcggaacaattaaaaataaaaggtcTGTGTGAGCCGGCTGAAAATGCGGATGATTTGAATGACGCAGCATCTGCCACAATAACCGTATCAGAGAATATACAGCAGGCGGTTGTTGGCAACATTGCCAGCATAGTGCCTGGCGCTCCTTCGCCCTCGAtcgagcaacagcagcagcaacacaaccaacaacatcagcagcaacagcagcagcacgagcaacagcaacagcaactggtaAACAGTGCGCTGTTAGCACAGCAGCATACTCTTGCAACGAACAGTGGAATACAATTGGCTAATGCGGGACAACAGTTGCTGAGTACAACAAGcggcaccagcagcagcagcctacaacaattgcagcaacagcaacaaccgtTGCAGCCCACGCCGCGTAAATCACGACTGCGTAAACGATCAAAGTCACCAGATTTGCAACTGGGTGGCAACACTGTAACTGTTCAACAACCACAGCCGGcacaccatcaacaacaacaacaacagcaacatcatcatcatccgcaAACGATACTCATCCAGGGACAGAATCAAACATCGATTGTGAGTCTGCAGCAAACGGCCGACGGAAATTATATACCCATTAGTTCAGCTGGCGACGACTCCGATAGCGATAATCACCCGCAGAAGATCTGCAAGACAGAGCAATCGGTAGCCTCGCCGGCATCAAACTCGTCCACATCGAATAATGCTGCAACGGGTGTGAGCGGCCAGGCGATTGTGACACAAATTGTAGTAGCGCGCGACggaaaagataaaaatatgACTAGTTTAGGCATGGGCATGAACGGCGGTCTGTTAGGCGTGCCCATGGGCTTTCTGGACTTTACACCGGAACCACCAGCACCATCGGCCACACCAGTCACCGTTACGGAACACGTCGATCTATCGTGCAACCCTAGTACCGACACACGCGATCTATCAAACCCTACCGAACCGCTCGACATAGACAATCATTTGGCTCAGCAAATGCATCGGCTCGATCAATCTCCCATGCATTCGATAGCTCATCATCATTCTACCGGTGACGAGAGTAACTCAAATCTGGTGCAGCATATCAAAAGCGAGGTGATTGAGGCCAAACACCTGGCCCATGTGCAAgctcagcaacagcagcagcagcaacaacaacaacaacagcagcagcagcaacagcagcagcagcaacaacaacagcaactgcagcaacatgctcatcatcatcatcagttgCACGCTCAGCAACTGTTGGCTCagagccagcagcaacaacaacaacaacagcaacagcaacatcaacaacagcaacagtcggCGGTGCATGCAGCGCATGCCACGCATGCAGAAATAAGCGGCGCCACTGTCATGGAGATTGATCCGAGCCAGATCAAGAATGAGCCGGGCATGATTATCACGCCAGAGATTGTCAATATGATGTCTACCGGACATATGGACATGTACCACTCGGATACGAGCGAGGACTCAATGATGATCGCTAACGGTTCGCCGCACGATCAGAATGAGCCGCATTATACGAATTTGGATCAGCAGCATGGCGGACTGGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGTATACCATCAACGACATTATGGCAGCGTGCACATCGTTTGGGCATCGAAACGCCTAAGAAGGAGGGCGGCACTAAATCGTGGAATGAGGATGCTTTGCAAAATGCCTTGGAGGCATTACGTTCAGGTCAAATATCAGCAAACAAAGCATCAAAAGCGTTTGGTATTCCCTCATCGACGCTCTACAAGATTGCGCGTCGCGAGGGCATACGTCTGGCGGCGCCATTCAATGCCGCACCAACCACGTGGACACCCGAGGACTTGGAGCGTGCTTTAGAGGCCATACGCGCTGGCAATACGTCTGTACAAAAAGCAAGTGCCGAATTCGGCATACCGACAGGAACACTTTATGGACGCTGCAAACGGGAAGGTATTGAACTATCTCGTTCGAATCCAACTCCTTGGTCCGAGGATGCAATGAACGAAGCATTAAACTCAGTGCGCGTCGGTCAAATGTCCATCAACCAGGCGGCCATTCACTACAACCTGCCATATAGTTCACTCTACGGACGCTTCAAGCGTGGCAAGTACGATGTGGTGGCCAATACTAGTGGTGTTTCGCTTATTAACACCTCGGGTAATACGACCGGCAGCATTGAGATAATCGAGCATAGCCAGGAAAATTCGTTGCatatgttgcagcaacagttcCCGTACAGTCCGTCGCCCCATCCGCCGACGCCTCAACATCATAGTACGCCGCAGCATCACAGTTCGCAGCAGGGACCGCCGACGCCACAGCAGATGCAACAGCATGTGGTGCACATGCAACAGCAGTCGCCGCATCAGGcgcaccatcaacaacaacagcagcagcacatgcAGCAGGATGTAGTTACATCAAGCAGTCAGGTGGTGCatagccagcagcagcaacagcagcttcaACAGATCTATCAGCATCACGGCACGCCTGAGCGTAGTTGA
- Protein Sequence
- MSGRSEGLLRTAEQLKIKGLCEPAENADDLNDAASATITVSENIQQAVVGNIASIVPGAPSPSIEQQQQQHNQQHQQQQQQHEQQQQQLVNSALLAQQHTLATNSGIQLANAGQQLLSTTSGTSSSSLQQLQQQQQPLQPTPRKSRLRKRSKSPDLQLGGNTVTVQQPQPAHHQQQQQQQHHHHPQTILIQGQNQTSIVSLQQTADGNYIPISSAGDDSDSDNHPQKICKTEQSVASPASNSSTSNNAATGVSGQAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQMHRLDQSPMHSIAHHHSTGDESNSNLVQHIKSEVIEAKHLAHVQAQQQQQQQQQQQQQQQQQQQQQQQQQLQQHAHHHHQLHAQQLLAQSQQQQQQQQQQQHQQQQQSAVHAAHATHAEISGATVMEIDPSQIKNEPGMIITPEIVNMMSTGHMDMYHSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGLGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVSLINTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQHHSSQQGPPTPQQMQQHVVHMQQQSPHQAHHQQQQQQHMQQDVVTSSSQVVHSQQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00470787;
- 90% Identity
- iTF_01327083;
- 80% Identity
- -