Sred004649.1
Basic Information
- Insect
- Scaptomyza reducta
- Gene Symbol
- -
- Assembly
- GCA_035044485.1
- Location
- JAWNNV010000476.1:247381-255733[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.9e-09 8.4e-06 25.3 0.0 16 40 571 597 567 600 0.84 2 4 7.1e-14 1.2e-10 40.8 0.1 2 39 612 649 611 652 0.94 3 4 1.3e-17 2.2e-14 52.8 0.0 1 45 666 711 666 711 0.98 4 4 1.3e-19 2.2e-16 59.2 0.0 1 43 718 761 718 762 0.97
Sequence Information
- Coding Sequence
- ATGCATCCTTTGCTCGCCTTCTACCCTGGCCTTCTACGCACCGcggaacaattaaaaataaaaggtcTGTGTGAGCCGGCTGAAAATGCGGATGATTTGAATGACGCAGCATCTGCGACAATAACCGTATCAGAGAATATACAGCAGGCGGTTGTTGGCAACATTGCCAGCATAGTGCCTGGCGCTCCTTCGCCCTCGatcgagcaacagcagcagcaacatcaccaacagcaacatcagcagcaacaacaacagcagcagcacgagcaacagcaacagcagctggtaAACAGTGCACTGTTAGCACAGCAGCATACACTTGCAACGAATAGTGGCATACAATTGGCCAATGCGGGTCAACAGCTGCTGAGTACCAcaagcggcggcagcagcagcctgcaacaattgcagcaacagcaacaaccgtTGCAGCCGACGCCGCGTAAATCGCGACTGCGTAAACGATCAAAGTCACCAGATTTGCAACTGGGTGGCAACACTGTAACAGTTCAACAACCCCACCCGGcacaccatcaacaacaacaacagcaacagcaacatcatcatcatccgcaAACGATACTCATCCAGGGACAGAATCAAACATCGATTGTTAGTCTACAGCAAACGGCCGACGGAAATTATATACCCATTAATTCAGCTGGCGACGACTCCGATAGCGATAATAAGCCGCAAAAGATCTGCAAGACAGAGCAATCGGTGGCCTCGCCGGCATCCAACTCGTCCACATCGAATAATGCTGCAACGGGCGTGAGCGGCCAGGCGATTGTGACACAAATTGTAGTAGCGCGCGACggaaaagataaaaatatgACTAGTTTAGGCATGGGCATGAACGGCGGTCTGTTAGGCGTGCCCATGGGCTTTCTGGACTTTACACCGGAACCACCAGCACCATCGGCCACACCAGTCACCGTTACGGAACATGTCGATCTGTCGTGTAACCCTAGCACCGACACGCGCGATCTATCAAACCCTACCGAACCGCTCGACATAGACAATCATTTGGCTCAGCAAATCCATCGGCTCGATCAATCTCCCATGCATTCGATAGCTCATCATCATTCAACCGGCGACGAGAGCAACTCAAATCTGGTGCAGCATATCAAAAGCGAGGTGATTGAGGCCAAACACCTTGCCCATGTGCAagctcagcaacagcagcagcagcaacaacaacagcagcaacagcagcagcaacaacagcaactgcagcaacatgcacatcatcatcatcagttgCACGCTCAGCAACTGTTGGCTCAgagtcagcaacaacagcaacagcaacaacaacaacagcagcagcagcagcaacaacatcaacaacaacagtcggCGGTGCATGCAGCGCATGCCACGCATGCAGAAATAAGCGGTGCCACTGTCATGGAGATTGATCCGAGCCAGATCAAGAATGAGCCGGGCATGATTATCACGCCAGAGATTGTCAATATGATGTCTACCACACATATGGACATGTACCACTCGGATACGAGCGAGGACTCAATGATGATCGCTAACGGTTCGCCGCACGATCAGAATGAGCCGCATTATACGAATTTGGATCAGCAGCATGGCGGGCTGGGTGGAAGCGTTTGCGGCCCAAGCGTCgggggtggtggtgttggtggtggtggcggcattggtggtggtggtagtgCTGGCGAGAAAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATACCATCAACGACCTTATGGCAGCGTGCACATCGTTTGGGCATCGAAACGCCTAAGAAGGAGGGCGGCACCAAATCGTGGAACGAGGATGCCTTGCAAAGTGCCTTGGAGGCATTACGTTCGGGTCAAATATCGGCAAACAAAGCATCAAAAGCGTTTGGTATTCCCTCATCGACGCTCTACAAGATTGCGCGTCGCGAGGGCATACGTCTGGCGGCGCCATTCAATGCCGCACCAACCACGTGGACACCTGAGGACTTGGAGCGTGCTTTAGAGGCGATACGCGCTGGCAATACGTCTGTACAAAAAGCAAGTGCCGAATTCGGCATACCGACAGGAACACTTTATGGACGCTGCAAACGGGAAGGCATTGAACTATCTCGTTCGAATCCAACTCCTTGGTCTGAGGATGCAATGAACGAAGCATTAAACTCAGTGCGCGTCGGTCAAATGTCCATCAACCAGGCGGCCATTCACTACAACCTGCCATATAGTTCACTCTACGGACGCTTCAAGCGTGGCAAATACGATGTGGTGGCCAATACAAGTGGTGTCTCGCTTATTAACACCTCGGGTAATACGACTGGCAGCATTGAGATAATCGAACATAGCCAGGAAAATTCGttGCATATGTTACAGCAACAGTTCCCGTACAGTCCGTCGCCCCATCCGCCGACGCCTCAGCATCATAGTACGCCGCAGCATCACAGTTCGCAGCAGGGACCGCCGACGCCACAGCAGATGCAACAGCATGTGGTGCACATGCAACAGCAGTCGCCGCATCAGGcgcaccatcaacaacaacagcagcagcagcacatgcAGCAGGATGTAGTTACATCAAGCAGTCAGGTGGTgcacagccagcagcagcaacagcagcttcaACAGATCTATCAGCATCACAGCACGCCTGAGCGTAGTTGA
- Protein Sequence
- MHPLLAFYPGLLRTAEQLKIKGLCEPAENADDLNDAASATITVSENIQQAVVGNIASIVPGAPSPSIEQQQQQHHQQQHQQQQQQQQHEQQQQQLVNSALLAQQHTLATNSGIQLANAGQQLLSTTSGGSSSLQQLQQQQQPLQPTPRKSRLRKRSKSPDLQLGGNTVTVQQPHPAHHQQQQQQQQHHHHPQTILIQGQNQTSIVSLQQTADGNYIPINSAGDDSDSDNKPQKICKTEQSVASPASNSSTSNNAATGVSGQAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHHSTGDESNSNLVQHIKSEVIEAKHLAHVQAQQQQQQQQQQQQQQQQQQQLQQHAHHHHQLHAQQLLAQSQQQQQQQQQQQQQQQQQHQQQQSAVHAAHATHAEISGATVMEIDPSQIKNEPGMIITPEIVNMMSTTHMDMYHSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGLGGSVCGPSVGGGGVGGGGGIGGGGSAGEKDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQSALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVSLINTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQHHSSQQGPPTPQQMQQHVVHMQQQSPHQAHHQQQQQQQHMQQDVVTSSSQVVHSQQQQQQLQQIYQHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00470787;
- 90% Identity
- iTF_01321111; iTF_01327808;
- 80% Identity
- -