Basic Information

Insect: Scaptomyza reducta
Gene Symbol: -
Assembly: GCA_035044485.1
Location: JAWNNV010000703.1:63729-68475[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 0.00052 0.036 14.5 1.6 1 23 228 250 228 250 0.97

2 26 0.0042 0.29 11.6 3.1 1 23 256 278 256 278 0.98

3 26 0.4 28 5.4 0.8 2 23 310 331 309 331 0.96

4 26 0.053 3.7 8.2 1.1 1 23 405 428 405 428 0.91

5 26 0.93 64 4.2 0.3 2 22 440 460 439 460 0.94

6 26 2.1 1.4e+02 3.1 0.5 1 20 469 488 469 490 0.91

7 26 0.12 8.4 7.0 0.4 2 23 504 525 503 525 0.97

8 26 0.00054 0.038 14.4 0.4 1 23 599 622 599 622 0.95

9 26 0.048 3.3 8.3 0.1 1 22 631 652 631 652 0.95

10 26 0.017 1.2 9.7 2.0 1 23 661 684 661 684 0.96

11 26 7.8e-05 0.0054 17.1 0.2 2 23 705 726 704 726 0.97

12 26 1.1e-05 0.00077 19.7 5.5 1 23 732 754 732 754 0.98

13 26 0.002 0.14 12.6 0.6 1 23 903 926 903 926 0.95

14 26 0.0036 0.25 11.8 2.6 1 22 933 954 933 954 0.96

15 26 0.088 6.1 7.5 0.5 1 23 963 986 963 986 0.91

16 26 8e-05 0.0056 17.0 2.0 1 23 1012 1034 1012 1034 0.97

17 26 2.4e-05 0.0017 18.7 3.0 1 23 1041 1063 1041 1063 0.98

18 26 0.0083 0.57 10.7 0.0 2 20 1090 1108 1089 1110 0.94

19 26 0.0036 0.25 11.8 2.2 1 23 1155 1178 1155 1178 0.96

20 26 0.0017 0.12 12.9 2.1 1 23 1215 1238 1215 1238 0.97

21 26 0.013 0.93 10.0 3.1 1 23 1260 1283 1260 1283 0.97

22 26 1.3e-05 0.00089 19.5 0.1 2 23 1305 1326 1304 1326 0.95

23 26 4.4e-05 0.003 17.9 2.9 1 23 1332 1354 1332 1354 0.99

24 26 4.8e-06 0.00033 20.9 1.9 1 23 1360 1382 1360 1382 0.97

25 26 5.5e-08 3.8e-06 27.0 2.4 1 23 1388 1410 1388 1410 0.99

26 26 0.00065 0.045 14.2 0.3 1 21 1416 1436 1416 1440 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	0.00052	0.036	14.5	1.6	1	23	228	250	228	250	0.97
2	26	0.0042	0.29	11.6	3.1	1	23	256	278	256	278	0.98
3	26	0.4	28	5.4	0.8	2	23	310	331	309	331	0.96
4	26	0.053	3.7	8.2	1.1	1	23	405	428	405	428	0.91
5	26	0.93	64	4.2	0.3	2	22	440	460	439	460	0.94
6	26	2.1	1.4e+02	3.1	0.5	1	20	469	488	469	490	0.91
7	26	0.12	8.4	7.0	0.4	2	23	504	525	503	525	0.97
8	26	0.00054	0.038	14.4	0.4	1	23	599	622	599	622	0.95
9	26	0.048	3.3	8.3	0.1	1	22	631	652	631	652	0.95
10	26	0.017	1.2	9.7	2.0	1	23	661	684	661	684	0.96
11	26	7.8e-05	0.0054	17.1	0.2	2	23	705	726	704	726	0.97
12	26	1.1e-05	0.00077	19.7	5.5	1	23	732	754	732	754	0.98
13	26	0.002	0.14	12.6	0.6	1	23	903	926	903	926	0.95
14	26	0.0036	0.25	11.8	2.6	1	22	933	954	933	954	0.96
15	26	0.088	6.1	7.5	0.5	1	23	963	986	963	986	0.91
16	26	8e-05	0.0056	17.0	2.0	1	23	1012	1034	1012	1034	0.97
17	26	2.4e-05	0.0017	18.7	3.0	1	23	1041	1063	1041	1063	0.98
18	26	0.0083	0.57	10.7	0.0	2	20	1090	1108	1089	1110	0.94
19	26	0.0036	0.25	11.8	2.2	1	23	1155	1178	1155	1178	0.96
20	26	0.0017	0.12	12.9	2.1	1	23	1215	1238	1215	1238	0.97
21	26	0.013	0.93	10.0	3.1	1	23	1260	1283	1260	1283	0.97
22	26	1.3e-05	0.00089	19.5	0.1	2	23	1305	1326	1304	1326	0.95
23	26	4.4e-05	0.003	17.9	2.9	1	23	1332	1354	1332	1354	0.99
24	26	4.8e-06	0.00033	20.9	1.9	1	23	1360	1382	1360	1382	0.97
25	26	5.5e-08	3.8e-06	27.0	2.4	1	23	1388	1410	1388	1410	0.99
26	26	0.00065	0.045	14.2	0.3	1	21	1416	1436	1416	1440	0.91

Sequence Information

Coding Sequence: atgttgcaGACGAATATTTGTCGTACATGTGCGTTACAAGACGACAATTTGTTGGCGCTGTCATCGTGCAGTAAAAAATACTCTGAGAAAAGTATTTGCGACATGTTGCACgaaataacacaaaatgaTACCCTGTTGGAGCACTCAGATGATAATCTGCCGCAGCATCTGTGTGGCCCATGTTTGAGCCAGCTGGAAGCTGCCTTTGCATTTGTGCTGCAGGCTCGCCAGGCTCAgactctgctgttgctgcagctacGCAATGGATTGCAGACAAAGTGTTTGGAAGAAATTCCCATTGATATTACACTAGAACACATCAAAACCGAAGCGGACATTGACATTGACCTAATTGCTGAGACCAACGCACAAATTAACGAGCAATTGGAGGACGAGGATGCCGATATGGAGGAGGATAAAGAGCAGGGGTTTTCTGCTGTGTCTGCCACTGGCTTCAAATGCCAACCAACAAGTGATAGCAATAGCAGCGAAGAAAATGTACATAACCATGATGTTGAGTTAAAGCACCCGCAGCTGCGGCGGAGTGCACGACGATCCAAACCTATCACTTTAAGCGAAAATGAGTCGACATGTGACCAAGAAAAGCTTCAGCCATCAGTCAAGCGTGGTCGTGGGCGTCCTGCACGTCAAAACATAACGGAGTCCAACGAGAATGGCCGGCACATGTGTAATGTTTGTGGCAAGACGTATTCGTGGTATCGCGACTTGCAGCGCCATGAGCGCATTCATTTTGAGCGCGCAGCCTATGTGTGCCAGAGTTGCGGCAAGAAATTCATGCGCAAAGATAAGTATATGTTCCATTTGCGAACGCACGAGAAGCAAGCTGTTGAAGTGCAGGCACTGCAGATGAGCAGTGAATGGCGCTATGCTGAGCGTCTCTACAGCTCAGGTAGCCTGAAGCGTGTGGAGTGCAAGCTGTGTGGTCTGAAGTGCCAGCGCATACAGGAGATGCGCGAGCATTTGGCAAGTCATGTTAACATTGACACATTGTCAAATCTGAGTATGGACAATGATGTCATTAGGGAACAATTTGCCAGCCAATGGGATTTGCAACAGATCAAGCAACAGGTGTGCATGCAAATATCGAAAGGTCGCGACCAGCTGGACAACTTTTGTGCTATTGTTAATGCGTACGGCTATGAGCTGTGCCTTAGCGACTCGGATGAGGAATTACCTGGCGTTTCGGCTCAATATGAATGCCTGCCCTGCAACGTCAGCTTCACACGCAAACATCGCCTTATTCAACACACCTTGGAGGAGCACACGCAAACGAACGAAAGTGAGACGCCTTGGGTGCGTTGCAATATCTGCCAAATTGGCTTTGTTTGCGTCAATCTGCTGGAGCAACATCAGCGCACACAATGCCTCAATCCACTTAAGCGTTACAGTTGCAACAATTGTCCCGGCAAATTCATTTGGCTTCAAAATCTACAGCAACACGCTTGCAGTAGACTGCAACAGGATCAACCAAAGGATTATCGCAAAATTCAGTGTTGTCTGTGCGATGCCAATCTAAGCAGCATGGTAGCTTTGCGATCCCATTTACTTACGCATCGCGATGGACTCACTGGCATCGATCCGCAGCAGCATGCTGCCTTCTTTCGCACATACTTCCGAGATGATATCGATTGTAGTCTTTCCGAGCTAAGTGGCCGCATCGCTGACGACTTTCAATCACAAAATTATGGACGCTATTTTAATGCCTGCACGGGCAGCGGCCAGGAATTGGACATCAATGATTCCGACACTGCTTTGAGCGACGCATCCAGTCTGCACGTCTGTGGCGTTTGTGGCGAGAGTACAGAACGTCTCGTCCAGTTGCAAAAGCATCAGGAAAGTAAACACAATGAGCTGGACAAAAGATTGCCTTACATATGCAGTGATTGTGACTCGGGTTTTGTGGCCGACTCGCTGCTCCAGCAACATCGTCGTCGTATATGCGCCAAGCAGCAAGCTAAATACAATTGCCAGGAATGCCGCCAGCGGTTTTACTGgctctccaactatgaacgacACATGCAGCTGAAGCATGCTGTTAAGCATGCGGGCGAGTCTCAGATTCAGAAACACAAgcggcaaacaacaaaactgcaatGCCCCGAATGCGAAAAGgtaTTTATCTGGCCCAAGGATCTGACACGTCACAAGCGGATGCATCAGCCACAGGTGCAGTTTGAATGCACATTTTGTGAGCGCAAGTTCCATCGTAAGGATAACCTCAAGTCACATATGCGAATGCACGGCGAACAACAATTGGATGCGTTAACTGTTACCAGTGAGCAACAGGACACGATGCAGGAGCGCATGCCGTTCATATTGGGCCACTTGTGTCGTCCCAATGGGTGCAAGCAGATTCAGTGCATGATTTGCCTATCCCAGCACACAAAGATCTCCGATTTGCGAACGCATTTAAGTAGCCATCAGTTTGCGCTAAAGTTTTCTGGGGAACGTGGCCAACCAAAAAGCATATCCAGCATTTGTCGTGGCCTGTACCCCGATTTAAGTGCGCCTTTGGATAAGCAGAACTTAATAATGCGCATACAGAGTGATTTAGCTGAAGGTCTGGAATTTGAAAGATTTATTTCGATTACCAACGAAGCAGGCAATGAGTTAAGCTTAGATAGCAGCGAAACAGATACGGATTCGGATTCAGCAGGCAACGAACAGAACAGCAGTGGACGCATGTACACCTGTGATCTCTGTCCGGTTCGTGTCACTCGCAAGTATCAGCTCTATTCCCATCAGCTGGAGCAGCACACGTGGGAGCAGGCAGCGCACGTTTGCAGCCACTGCCAGGCAAGATTTGTGAACGAAAAGCTGCTGGAGCATCATTATCGCACTCTCTGCCGTAACGGTCAGCGTCGTTTTCTCTGTCGCAAGTGTCCATTACGCTTTCGCTGGCGCGACAATCTTAAGCTACACACTGACATTGCGCATCAGGATGGCAAATTACTAGGACAGAGTAGTCTGGAAACTCAGGTGAATGGTTCACGAATGCTGCCGGTTGTTAGCTACGACTGTATGGAGTGCAAGCGTAGcttcaaaatgcaaaaggaTCTCACAAGGCACACGCTTATGCATACCCAAGAGTCGAGCATCTATCGTTGTCATTGGTGCGCACGTCGCTTCTATCGCCAGTCAAATCTACTGCAGCACATTGAGCGTCATGGCATCACATCCGATCAGCTGCCCTATGCGGAGGCCCTGCTCACTGCCAGTCGCCATCCGCATGGCCAGAAGTGCATTCAGTGTAAGGTGTGCGAAATATCCTTTACCAGCATTGCGGCACTGCGTTCCCATCTGGGATCAGCAGCAGTTGGCACACATCATGCAATTGAATCTATGCTCAACTATTCTATTACTGATCAGTTGGGCTATGAGCTGCACTTGGAGGACTCGGAAACAGATGAGGAGGCCAAGCCGGATGGTACGCCGGCACAGTACACTTGTGGCATGTGCCAGCTGCGTTGTGTGCGCAAATTTGAGctgcaacagcatcagcaggcCATGCATCGTCTAGAGCGAATCAGTGAGGGATGCCAGCTTTGCATCTTCAAGAGCGTTTCGCCAGATCTGATTGCCTATCATCGGCGCGTTTTGTGCGACAATACGGAGAAACAGTTCAAGTGCTCAAAATGTAGCTACAAATTTATGTGGCAATCGAATCTTGAGCAGCACATGCAGCTACAGCATCCCAGTAGCGGGGAGCCAACTTCAATGCCCGTGCCGGACAGTGGCAACTCTGAGAGCCAAATCTTTCAGTGCGGTCAGTGCCCTAGTAAATATAATCGTAAGGATCGCCTTACAGCGCATGTGAAGAAATGTCATGCAGATGGCGCAACAGCCTTTAAAAAGTCGCCAACTACACCAGCCAAGCAACAAAAGAGTTTTTTGTGCGCTTTCTGTGGCAAAGCGGTAAGCTCCTCGTCCAATTTAATTATACACATACGACGACACACGGGAGAGAAGCCATTCAAGTGTGATTATTGTGACATGGCCTTTCCTCGTTCCTCTGATCTCCAATGCCACAGACGCACCCACACCGGGGAGCGACCTCATGTTTGCACAGTCTGCCAGAGGGGCTTCGCTCGCTCCTACAAGCTTCAGCAGCACATGCGCATCCACAACGGCGAGCGACCCTACAAGTGTACCTACTGCGACAAGAGCTTCACCCAGTCGAATGATCTAACGCTCCACATACGTCGACATACGGGCGAACGTCCCTATCAGTGCAACACGTGCGGCGAGAGATTTATTCAGGGCACAGCTCTGAAAAATCATCGACTACAGAATGGTCACATCGAAACGGAAgtcgaaaaagttaaagaTGACTGA
Protein Sequence: MLQTNICRTCALQDDNLLALSSCSKKYSEKSICDMLHEITQNDTLLEHSDDNLPQHLCGPCLSQLEAAFAFVLQARQAQTLLLLQLRNGLQTKCLEEIPIDITLEHIKTEADIDIDLIAETNAQINEQLEDEDADMEEDKEQGFSAVSATGFKCQPTSDSNSSEENVHNHDVELKHPQLRRSARRSKPITLSENESTCDQEKLQPSVKRGRGRPARQNITESNENGRHMCNVCGKTYSWYRDLQRHERIHFERAAYVCQSCGKKFMRKDKYMFHLRTHEKQAVEVQALQMSSEWRYAERLYSSGSLKRVECKLCGLKCQRIQEMREHLASHVNIDTLSNLSMDNDVIREQFASQWDLQQIKQQVCMQISKGRDQLDNFCAIVNAYGYELCLSDSDEELPGVSAQYECLPCNVSFTRKHRLIQHTLEEHTQTNESETPWVRCNICQIGFVCVNLLEQHQRTQCLNPLKRYSCNNCPGKFIWLQNLQQHACSRLQQDQPKDYRKIQCCLCDANLSSMVALRSHLLTHRDGLTGIDPQQHAAFFRTYFRDDIDCSLSELSGRIADDFQSQNYGRYFNACTGSGQELDINDSDTALSDASSLHVCGVCGESTERLVQLQKHQESKHNELDKRLPYICSDCDSGFVADSLLQQHRRRICAKQQAKYNCQECRQRFYWLSNYERHMQLKHAVKHAGESQIQKHKRQTTKLQCPECEKVFIWPKDLTRHKRMHQPQVQFECTFCERKFHRKDNLKSHMRMHGEQQLDALTVTSEQQDTMQERMPFILGHLCRPNGCKQIQCMICLSQHTKISDLRTHLSSHQFALKFSGERGQPKSISSICRGLYPDLSAPLDKQNLIMRIQSDLAEGLEFERFISITNEAGNELSLDSSETDTDSDSAGNEQNSSGRMYTCDLCPVRVTRKYQLYSHQLEQHTWEQAAHVCSHCQARFVNEKLLEHHYRTLCRNGQRRFLCRKCPLRFRWRDNLKLHTDIAHQDGKLLGQSSLETQVNGSRMLPVVSYDCMECKRSFKMQKDLTRHTLMHTQESSIYRCHWCARRFYRQSNLLQHIERHGITSDQLPYAEALLTASRHPHGQKCIQCKVCEISFTSIAALRSHLGSAAVGTHHAIESMLNYSITDQLGYELHLEDSETDEEAKPDGTPAQYTCGMCQLRCVRKFELQQHQQAMHRLERISEGCQLCIFKSVSPDLIAYHRRVLCDNTEKQFKCSKCSYKFMWQSNLEQHMQLQHPSSGEPTSMPVPDSGNSESQIFQCGQCPSKYNRKDRLTAHVKKCHADGATAFKKSPTTPAKQQKSFLCAFCGKAVSSSSNLIIHIRRHTGEKPFKCDYCDMAFPRSSDLQCHRRTHTGERPHVCTVCQRGFARSYKLQQHMRIHNGERPYKCTYCDKSFTQSNDLTLHIRRHTGERPYQCNTCGERFIQGTALKNHRLQNGHIETEVEKVKDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01323519;
90% Identity: iTF_01321321;
80% Identity: -