Basic Information

Insect: Scaptomyza polygonia
Gene Symbol: -
Assembly: GCA_035044585.1
Location: JAWNNU010001241.1:192415-198514[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 0.0004 0.044 14.8 2.7 1 23 211 233 211 233 0.97

2 26 0.00035 0.038 15.0 0.8 1 23 239 261 239 261 0.99

3 26 0.056 6.1 8.1 0.7 2 23 293 314 292 314 0.96

4 26 0.0064 0.69 11.1 1.8 1 23 388 411 388 411 0.94

5 26 0.44 47 5.3 0.6 2 22 423 443 422 443 0.95

6 26 2.9 3.1e+02 2.7 0.4 1 20 452 471 452 473 0.91

7 26 0.087 9.5 7.5 1.0 2 23 487 508 486 508 0.97

8 26 0.1 11 7.2 0.3 1 23 580 603 580 603 0.94

9 26 8.3e-05 0.009 17.0 0.4 1 22 612 633 612 633 0.94

10 26 0.01 1.1 10.4 1.7 1 23 642 665 642 665 0.96

11 26 0.003 0.32 12.1 2.7 2 23 685 706 684 706 0.97

12 26 7.9e-06 0.00086 20.2 5.4 1 23 712 734 712 734 0.98

13 26 0.00071 0.077 14.1 1.9 1 23 883 906 883 906 0.97

14 26 0.018 2 9.6 2.2 1 22 913 934 913 934 0.95

15 26 0.026 2.8 9.1 0.3 1 23 943 966 943 966 0.93

16 26 5.5e-05 0.006 17.6 1.6 1 23 987 1009 987 1009 0.97

17 26 2.4e-05 0.0026 18.7 3.0 1 23 1016 1038 1016 1038 0.98

18 26 0.036 3.9 8.7 0.0 2 20 1065 1083 1064 1085 0.93

19 26 0.0036 0.39 11.9 2.2 1 23 1130 1153 1130 1153 0.96

20 26 0.0018 0.19 12.8 1.6 1 23 1190 1213 1190 1213 0.96

21 26 0.012 1.3 10.2 3.0 1 23 1235 1258 1235 1258 0.97

22 26 1e-05 0.0011 19.8 0.1 1 23 1278 1300 1278 1300 0.96

23 26 0.00022 0.024 15.7 3.1 1 23 1306 1328 1306 1328 0.99

24 26 5.2e-06 0.00056 20.8 2.2 1 23 1334 1356 1334 1356 0.97

25 26 1.6e-07 1.7e-05 25.6 1.7 1 23 1362 1384 1362 1384 0.99

26 26 0.00074 0.08 14.0 0.5 1 21 1390 1410 1390 1414 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	0.0004	0.044	14.8	2.7	1	23	211	233	211	233	0.97
2	26	0.00035	0.038	15.0	0.8	1	23	239	261	239	261	0.99
3	26	0.056	6.1	8.1	0.7	2	23	293	314	292	314	0.96
4	26	0.0064	0.69	11.1	1.8	1	23	388	411	388	411	0.94
5	26	0.44	47	5.3	0.6	2	22	423	443	422	443	0.95
6	26	2.9	3.1e+02	2.7	0.4	1	20	452	471	452	473	0.91
7	26	0.087	9.5	7.5	1.0	2	23	487	508	486	508	0.97
8	26	0.1	11	7.2	0.3	1	23	580	603	580	603	0.94
9	26	8.3e-05	0.009	17.0	0.4	1	22	612	633	612	633	0.94
10	26	0.01	1.1	10.4	1.7	1	23	642	665	642	665	0.96
11	26	0.003	0.32	12.1	2.7	2	23	685	706	684	706	0.97
12	26	7.9e-06	0.00086	20.2	5.4	1	23	712	734	712	734	0.98
13	26	0.00071	0.077	14.1	1.9	1	23	883	906	883	906	0.97
14	26	0.018	2	9.6	2.2	1	22	913	934	913	934	0.95
15	26	0.026	2.8	9.1	0.3	1	23	943	966	943	966	0.93
16	26	5.5e-05	0.006	17.6	1.6	1	23	987	1009	987	1009	0.97
17	26	2.4e-05	0.0026	18.7	3.0	1	23	1016	1038	1016	1038	0.98
18	26	0.036	3.9	8.7	0.0	2	20	1065	1083	1064	1085	0.93
19	26	0.0036	0.39	11.9	2.2	1	23	1130	1153	1130	1153	0.96
20	26	0.0018	0.19	12.8	1.6	1	23	1190	1213	1190	1213	0.96
21	26	0.012	1.3	10.2	3.0	1	23	1235	1258	1235	1258	0.97
22	26	1e-05	0.0011	19.8	0.1	1	23	1278	1300	1278	1300	0.96
23	26	0.00022	0.024	15.7	3.1	1	23	1306	1328	1306	1328	0.99
24	26	5.2e-06	0.00056	20.8	2.2	1	23	1334	1356	1334	1356	0.97
25	26	1.6e-07	1.7e-05	25.6	1.7	1	23	1362	1384	1362	1384	0.99
26	26	0.00074	0.08	14.0	0.5	1	21	1390	1410	1390	1414	0.91

Sequence Information

Coding Sequence: ATGTGGCCCACTAATATTTGTCGTACATGCGCGCTACAAGATGACAATTTGTTGGCGTTGTCGTTGCGTAGTAAAAAATACCCAGAGAGAAGTATTTGCGACATGTACCAAGAATTAACACAAAATGATCCTGTGTGGGAGCTCTCAAATAATAATCTGCCGCAGCATTTGTGCGGCTCATGCTTGAACCAGCTGGAAGCTGCCTATGCATTTTTACTGCAGGCTCGCCAGGCTCAGGAGCGACTGTTGCTGCAGCTACAGAAAGGATCAGAGTGTCTGCAAGAAATACCCATTGATATTACGCTAGAAAACATCAAAACCGAAGTGGACATTGAACTGTATGCTCCGACCAACACAGAAATGAATGAGCAGCTTGAGTTCCAAGATGCTGATATGGAGGAGGAGAATGAGAACAAGGATGAAAGCGATTGCAGTGAAGAAAACTTTGATGACCATAAAGTTGAGTTCAAACCTCCGCAGCTTCGGCGAAGTGCAAGGAGAGCCAAACCTAGCACTGATAGCGAAAGTGATTCTACATCTGATCAAGCAAAACTCCAGCCAGCCATCAAGCGTGGTCGTGGACGTCCTGCACGTCAAAACAGAACGGGGACCATAAACGAAGATGGGCGACACATGTGTAAGGTGTGTGGCAAGACATACTCATGGTATCGCGACTTGCAGCGCCATGAGCGCACACATTATGAGCCGGCGGCCTATGTATGCGAGAGTTGCGGCAAGGAATTCTTACGCAAGGATAAATACATGATCCATCTGCGAACGCACGAGAAACAAACGATTAAAGTACAAGCGCTGCAGATAAGCAGTGAATGGCGCTACGCTGAGCGTTTATACAGTTCGGGTCGCCTGAAGCGTGTAGAGTGCAAGCTGTGCGGTTTAAAGTGCCAGCGCATACAGGAATTGCGTGAGCATTTAGCAAGTCATTCAAACATTGAGACATTGTCAAATCTCAGTATGGACAATGATGTCATCAGGGAGCTATTTGGCAACGAATGCGATTTGCAACAGATTAAGCAACAGGTGGCCATACAAATAGCTAAAGGCCGCGAACAGCTGGAGAACTTCTGTGCTGTTGTAAATGCTTACGGCTATGAGCTCTGCCTTAGCGACTCGGATGATGAGTTGCCTGGCCCGTCGGCAAAATATCAATGTCAGCCCTGCAATGCCAGCTTTACACGCAAACATCGCCTCATACGGCACACCTTGGAGGAGCACACGCGAACAAGCGATACTGAAATGACTTGGGTGCGCTGCAATATCTGCCAAATAGGCTTTGTTTGTGCCAAACTTTTTGAGCAACATCAGCGCACACAGTGCCTTAATCCGCTTAAGCGTTACAGCTGCGACAACTGTCCCGGCAAATTTATTTGGCTACAGAATCTACAGCAGCACGCTTGCAGTAGACAGCAACAAGATCAACAACAGGCTTATCGTAAAATGCAGTGCTGTCTGTGCGATGCCAAACTTAACAGCATGTCAGCTTTGCGCTCTCATGTACTTACGCACCGCGATGGACATACTGGTATCCAGCAGGACACAGCTTACTTTCGCACCTACTATCAAGTTGATAAAGACTCCAATCTTTCTGAGCTCAGTGCACGCATAGCTGGCGACTTTCAATCACAGAATGTTGGACTCTACTTTAATGCCTGCACGGACAGTGGCCAAGAATTGGACTTTAATGATTCGGACACTGCCTTGAGTGATACAACTACTCTGCACAGTTGTGCCATGTGTGGTGAGAGCACACAAGCTCTCGCTCAGTTGCAACAACATCAGGACAGTCAGCACAATGAGCTTGATAAGAAACTGCCACACATCTGCAGTGAATGTGGTTTGGGCTTTGTGTCTAAATCGCTGCTTCAGCAACATCGTCGACGTATCTGTGCCAAGTTGCAAGCTAAATACAATTGCCAGGAATGCAGTCAGCGCTTTTATTGGCTCTCTAACTATGAACGACATATGCAGCTTAAGCATGCTGTTGCGACGGCCGAGGTTCAGATTGAGAAAAACAAGCGGCAAACAACAAAGCTGCAGTGCACCGAATGCCAAAAGatGTTTATCTGGCACAAGGATCTGACGCGACACAAACGGATTCATCAGTCACAGGAGCAGTTTGAATGCAACTTTTGTGAGCGGAAGTTCCATCGTAAGGATAACCTTAAGTCGCATATGCGAATGCATGGCgagaaaaaaatgaaagcaaCAACTATGGCCATTGAGCAGCAGGACACGATGCAACAGCGCATGCCAATAACATTGAGCCACTTGTGCCGTCGCAATGGCTGCAAGCAGATTCAGTGCATGATTTGTCTATCTCAGCACACAAAGATAACCGATTTGAAAACTCATTTAAGTAGCCATCAGTTAGCGCTTCGATTTTCCGGAGAACGTAGCCAACCAGAGAGCATATCCAGCATTTGTCGTGCTTTCTATCCCGAGCTAAGTACGCCGCTGGATGAAGAGGACTTAATAAAGCGCATACAGAGTGATCTAGCTAATGATCTGGAATTGGAAAGATTCATATCGATAACCAACGAGGCGGGCATTGAATTGAGCTTAGATAGCAGCGAAACAGATACAGATTCAGATTCAGCAGACAACCAGCAAAGCAGCAATGGACGAGTGTACACCTGTGAGGTCTGCCAGGTTACCGTGACTCGAAAGCATCAGCTCTATGCCCACCAGCTGAAACAGCACACGTGGGAACAGGCAGCGCACGTTTGTAGCCACTGCCAAGCAAGATTTGTAAATGATCAGCTACTGGAGCATCACTATCGCACCCTCTGCCGTAATACCCAGCGTCGCTTTCTCTGTCGCAAGTGTCCATTACGCTTTCGCTGGCGCGATAATCTTAAGCTCCACATTGACGTTGCGCATCGAGATGGAAATATACAACAACATGCCAGCCTGGATATTCAGATAAATGGTTCACGTAGCTACGACTGTGTCGAATGCAAGCGTagtttcaaaatgcaaaaagatCTCACAAGGCACACGCTAATGCATAACCAGGAGTCGAGCACCTATCGCTGTCATTGGTGCGCACGTCGCTTCTATCGCCAGTCAAATCTGCTGCAGCACATTGAGCGTCACGGCGTCAGCGCCGATCAGCTGCCCTATGCTGAGGCCCTGCTTAAGGCCAATCGGCATCCGCATGGCCAGAAGTGCATTCAGTGCAAGGTATGCGAAATACCCTTTGCCAGCATTGCTGAACTGCGTTCCCATCTGGCATCAGCTCCAGTTGGCACGCATCATGCAATTGAATCTATGCTCAACTATTCCATTACTGATCAGCTGGGCTACGAGCTGCACTTGGAAGACTCGGAAACGGATGAGGAGGCCAAGCCGCAAGGTACGCCGGCGCATTACACTTGTGGCATGTGCCAGCTGCGCTGTGTGCGCAAATTTGAGctgcaacagcatcagcaggcCATGCATCGTCTAGAGCGGATCAGTGAGGGATGCGAGCTGTGCATCTTCAAGAGCGTCTCACCAGATCTTATTGCCTATCATCGTCGCGTACTTTGCGGCAATACAGAGAAACAGTTTAAGTGCTCTAAATGTAGCTACAGATTTATGTGGCAATCAAATCTTGAACAGCACATGCTGCTACAGCATCCCAGCAGCGGCGAGCAGCCTGTTATGCCCGCTTCGGTCATTGCCAACACTGAGAGCCAAATCTTTCAGTGCGGTCAGTGTCCCAGTAAGTATAATCGCAAGGATCGCCTAACGGCACATGTGAAAAGATGTCACGCAGATGACGCTACAGCTACCGAAAAATCGCCAGCGACAGCTAAGCAACAAAAGAGTTACTTGTGCGCTTTCTGTGGCAAAGCGGTAAGCTCCTCTTCCAATTTAATTATACACATACGTAGACACACGGGAGAGAAGCCATTCAAATGCGATTTCTGTGACATGGCGTTTCCACGATCCTCCGATCTTCAATGCCATCGACGCACCCATACCGGCGAGCGACCACATGTCTGCACCGTCTGCAAGAGGGGCTTCGCTCGCTCCTACAAGCTGCAGCAGCACATGCGCATTCACAATGGCGAGCGACCCTACAAGTGTACCTACTGCGACAAGGGCTTCACACAATCTAATGATCTAACGCTCCACATACGACGACATACGGGCGAACGTCCCTACCAGTGCAACACGTGTGGCGAAAGATTTATTCAGGGCACAGCTCTGAAAAATCATCGACTGCAGAATAGTCACTTTGAAACCGAACAACTAAAAGATGACTGA
Protein Sequence: MWPTNICRTCALQDDNLLALSLRSKKYPERSICDMYQELTQNDPVWELSNNNLPQHLCGSCLNQLEAAYAFLLQARQAQERLLLQLQKGSECLQEIPIDITLENIKTEVDIELYAPTNTEMNEQLEFQDADMEEENENKDESDCSEENFDDHKVEFKPPQLRRSARRAKPSTDSESDSTSDQAKLQPAIKRGRGRPARQNRTGTINEDGRHMCKVCGKTYSWYRDLQRHERTHYEPAAYVCESCGKEFLRKDKYMIHLRTHEKQTIKVQALQISSEWRYAERLYSSGRLKRVECKLCGLKCQRIQELREHLASHSNIETLSNLSMDNDVIRELFGNECDLQQIKQQVAIQIAKGREQLENFCAVVNAYGYELCLSDSDDELPGPSAKYQCQPCNASFTRKHRLIRHTLEEHTRTSDTEMTWVRCNICQIGFVCAKLFEQHQRTQCLNPLKRYSCDNCPGKFIWLQNLQQHACSRQQQDQQQAYRKMQCCLCDAKLNSMSALRSHVLTHRDGHTGIQQDTAYFRTYYQVDKDSNLSELSARIAGDFQSQNVGLYFNACTDSGQELDFNDSDTALSDTTTLHSCAMCGESTQALAQLQQHQDSQHNELDKKLPHICSECGLGFVSKSLLQQHRRRICAKLQAKYNCQECSQRFYWLSNYERHMQLKHAVATAEVQIEKNKRQTTKLQCTECQKMFIWHKDLTRHKRIHQSQEQFECNFCERKFHRKDNLKSHMRMHGEKKMKATTMAIEQQDTMQQRMPITLSHLCRRNGCKQIQCMICLSQHTKITDLKTHLSSHQLALRFSGERSQPESISSICRAFYPELSTPLDEEDLIKRIQSDLANDLELERFISITNEAGIELSLDSSETDTDSDSADNQQSSNGRVYTCEVCQVTVTRKHQLYAHQLKQHTWEQAAHVCSHCQARFVNDQLLEHHYRTLCRNTQRRFLCRKCPLRFRWRDNLKLHIDVAHRDGNIQQHASLDIQINGSRSYDCVECKRSFKMQKDLTRHTLMHNQESSTYRCHWCARRFYRQSNLLQHIERHGVSADQLPYAEALLKANRHPHGQKCIQCKVCEIPFASIAELRSHLASAPVGTHHAIESMLNYSITDQLGYELHLEDSETDEEAKPQGTPAHYTCGMCQLRCVRKFELQQHQQAMHRLERISEGCELCIFKSVSPDLIAYHRRVLCGNTEKQFKCSKCSYRFMWQSNLEQHMLLQHPSSGEQPVMPASVIANTESQIFQCGQCPSKYNRKDRLTAHVKRCHADDATATEKSPATAKQQKSYLCAFCGKAVSSSSNLIIHIRRHTGEKPFKCDFCDMAFPRSSDLQCHRRTHTGERPHVCTVCKRGFARSYKLQQHMRIHNGERPYKCTYCDKGFTQSNDLTLHIRRHTGERPYQCNTCGERFIQGTALKNHRLQNSHFETEQLKDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01324290; iTF_01322072; iTF_01322796;
90% Identity: -
80% Identity: -