Basic Information

Insect: Scaptomyza flava
Gene Symbol: -
Assembly: GCA_003952975.1
Location: RKRM01000001.1:490869-498041[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 0.00088 0.067 13.6 3.0 1 23 228 250 228 250 0.97

2 26 0.036 2.7 8.5 2.4 1 23 256 278 256 278 0.98

3 26 0.033 2.5 8.6 0.9 2 23 310 331 309 331 0.96

4 26 0.023 1.7 9.1 2.3 1 23 405 428 405 428 0.93

5 26 1.2 89 3.7 0.4 2 22 440 460 439 460 0.93

6 26 5.2 4e+02 1.7 0.1 1 19 469 487 469 487 0.90

7 26 0.031 2.3 8.7 0.9 2 23 504 525 503 525 0.97

8 26 0.058 4.4 7.8 0.2 1 23 599 622 599 622 0.95

9 26 0.00013 0.01 16.2 0.2 1 22 631 652 631 652 0.94

10 26 0.008 0.61 10.5 1.9 1 23 661 684 661 684 0.96

11 26 4.6e-05 0.0035 17.6 0.4 2 23 704 725 703 725 0.97

12 26 6.9e-06 0.00052 20.2 5.4 1 23 731 753 731 753 0.98

13 26 0.0025 0.19 12.1 2.4 1 23 902 925 902 925 0.97

14 26 0.004 0.3 11.5 2.2 1 22 932 953 932 953 0.96

15 26 0.024 1.8 9.1 0.2 1 23 962 985 962 985 0.93

16 26 4.8e-05 0.0036 17.5 1.6 1 23 1006 1028 1006 1028 0.97

17 26 2.1e-05 0.0016 18.7 3.0 1 23 1035 1057 1035 1057 0.98

18 26 0.014 1.1 9.8 0.0 2 20 1084 1102 1083 1104 0.93

19 26 0.0073 0.55 10.7 1.6 1 23 1149 1172 1149 1172 0.96

20 26 0.0021 0.16 12.4 1.0 1 23 1209 1232 1209 1232 0.96

21 26 0.012 0.88 10.0 3.1 1 23 1254 1277 1254 1277 0.97

22 26 1.1e-05 0.00084 19.5 0.1 2 23 1298 1319 1297 1319 0.95

23 26 0.00019 0.014 15.7 3.1 1 23 1325 1347 1325 1347 0.99

24 26 1.8e-06 0.00014 22.0 2.0 1 23 1353 1375 1353 1375 0.97

25 26 4.7e-08 3.6e-06 27.0 2.4 1 23 1381 1403 1381 1403 0.99

26 26 0.00042 0.032 14.6 0.4 1 22 1409 1430 1409 1433 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	0.00088	0.067	13.6	3.0	1	23	228	250	228	250	0.97
2	26	0.036	2.7	8.5	2.4	1	23	256	278	256	278	0.98
3	26	0.033	2.5	8.6	0.9	2	23	310	331	309	331	0.96
4	26	0.023	1.7	9.1	2.3	1	23	405	428	405	428	0.93
5	26	1.2	89	3.7	0.4	2	22	440	460	439	460	0.93
6	26	5.2	4e+02	1.7	0.1	1	19	469	487	469	487	0.90
7	26	0.031	2.3	8.7	0.9	2	23	504	525	503	525	0.97
8	26	0.058	4.4	7.8	0.2	1	23	599	622	599	622	0.95
9	26	0.00013	0.01	16.2	0.2	1	22	631	652	631	652	0.94
10	26	0.008	0.61	10.5	1.9	1	23	661	684	661	684	0.96
11	26	4.6e-05	0.0035	17.6	0.4	2	23	704	725	703	725	0.97
12	26	6.9e-06	0.00052	20.2	5.4	1	23	731	753	731	753	0.98
13	26	0.0025	0.19	12.1	2.4	1	23	902	925	902	925	0.97
14	26	0.004	0.3	11.5	2.2	1	22	932	953	932	953	0.96
15	26	0.024	1.8	9.1	0.2	1	23	962	985	962	985	0.93
16	26	4.8e-05	0.0036	17.5	1.6	1	23	1006	1028	1006	1028	0.97
17	26	2.1e-05	0.0016	18.7	3.0	1	23	1035	1057	1035	1057	0.98
18	26	0.014	1.1	9.8	0.0	2	20	1084	1102	1083	1104	0.93
19	26	0.0073	0.55	10.7	1.6	1	23	1149	1172	1149	1172	0.96
20	26	0.0021	0.16	12.4	1.0	1	23	1209	1232	1209	1232	0.96
21	26	0.012	0.88	10.0	3.1	1	23	1254	1277	1254	1277	0.97
22	26	1.1e-05	0.00084	19.5	0.1	2	23	1298	1319	1297	1319	0.95
23	26	0.00019	0.014	15.7	3.1	1	23	1325	1347	1325	1347	0.99
24	26	1.8e-06	0.00014	22.0	2.0	1	23	1353	1375	1353	1375	0.97
25	26	4.7e-08	3.6e-06	27.0	2.4	1	23	1381	1403	1381	1403	0.99
26	26	0.00042	0.032	14.6	0.4	1	22	1409	1430	1409	1433	0.91

Sequence Information

Coding Sequence: atgttgccCACAAATGTTTGTCGTACATGCGCGCTACAAGATGACAATTTGTTGGCTCTATCGTCGCATAGTAAGAAATACCCAGAGAGAAATATTTGTGACATGCTCGACGAATTAACACATAACGATCCTCTGTGGGAGCACTCAGATGATAATCTGCCGCAGCATCTGTGCGGCCCATGTTTGATCCAGCTGGAAGCTGCCTATGCATTTTTGCTGCAGGCTCGCCAGGCTCAGGAGcgactgttgctgcagctACGGAAAGGATTGCAGACAAAGTGTCTGGAAGAAATGCCCATTGATATAACGCTACAGAACATCAAAGCCGAAGTGGACATTGACCTATATGCTGAAACAAACACAGAAATGCATGAGGAATTTGAGGTCGAAGATGCTGATAAGGAAGAGGAGAATGAGAAAAATGTTGCAGCTGTGTCTGTTACAGCCTTAAAATGCCTACAAAAAAGTGATAGCGATAGCAGTGAAGAAAACTTAGATGAcCGTGATGTTGAGTTCAAGCGCCCGCAGCTTCGCCGAAGTGCAAGGAGAGCCAAACCTAGCACTGATACCGAAAATTATACGACATCTGATCTAGCATGTCTTCAGCCAGCCCCAGTCAAGCGTGGTCGTGGGCGTCCCGCACggcaaaacaaaactgaaaccaTCAACGAGGATGGCCGGCACATGTGTAAGGTGTGTGACAAGACGTACTCGTGGTATCGCGACTTGCAGCGCCATGAGCGCACACATTTTGAGCAGGCAGCCTATGTTTGCGAGAGTTGCGGCAAGAAATTTTTACGCAAGGATAAATACATGTTTCATCTGCGAACGCACGAGAAACAAGCAGTTAAAGTGCAGGCGCTGCAGAGGAGCGGAGAATGGCGCTACGCTGAGCGTCTCTACAGTTCGGGTCGCCTGAAGTGTGTAGAGTGCAAGCTGTGCGGCTTAAAGTGCCAGCGCATAAAGGAGTTGCGTGAGCATTTAGCAAGTCATTCAAACATTGAGACATTGTCAAGTCTCAGTATGGACAATGATGTCATCAGGGAGCAATTTGGCAACCAATGGGATTTGCAACAGATTAGGCAACAGGTGTGCACACAAATAGCTCAAGGTCGCGAACAGCTGGAGAACTTCTGTGTTGTTGTAAATGCTTACGGCTATGAGCTGTGCCTGAGCGACTCGGATGAGGAGGTGCCTGGCGTGTCGGCTCAATATCAATGCCTGCCCTGCAATGCTAGCTTTACACGCAAACATCGCCTCATACGGCACACCTTGGAGAAGCACTCGCAAGCAAACGAAACTGAAACGCCTTGGGTGCGCTGCAACATCTGCCAAATAGGCTTTGTTTGTGGCAAACTGTTGGAGCAACATCAGCGCACACAGTGCCTTAATCCGCTAAAGCGTTACAGCTGCGACAACTGCCCCGGCAAATTTATTTGGCTACAGAATCTACAGCAACACGATTGCAGTAGACTGCAACAGGATCAACAACAGGCTTATCAACAAATTCAATGCTGTCTGTGCGATGCCAAACTAAACAGCATGTCAGCTTTGCGCTCCCATTTACTTACGCATCGCGATGGACACACTGGCATCGATCCGCAGCAGGACGCTGCCTTCTTTCGCACCTATTATCAAGTTGATATGGACTGCAATATTTCAGAGCTCAGTGCACGCATAGCTGGCGACTTTCAATCACAGAATGTTGGACGCTACTTTAATGCCTGCACGGACAGTGGTCAGGAATTGGACTTCAATGATTCGGACACTGCTTTGAGCAATGCACCTATTCTGCACAGCTGTGCCGTGTGTGGTGAGAGTACACAAGCTCTcgcccagttgcaacaacatcAGGAGAGTCAACACAATGAGCTGGATAAAAAGCTGCCTCATATCTGTGCTGATTGTGGTTTAGGCTTTGTGTCTAAATCACTGCTTCAGCAACATCGTCGGCGTATCTGTGGCAAGTTGCAAGCTAAATACAATTGCCGGGAATGCAATCAGCGCTTTTACTGGCTATCTAACTATGAACGGCACATGCAGCTAAAGCATGCTGTTGGAACGGGCGAAGCTCCGATTGAGAAACAAAAGCTGCAAACAACGAAGTTGCAGTGCACCGAATGCGATAAGgTATTTATATGGCCCAAGGATCTGACTCGTCACAAACGCATGCATCAGTCACAGGTGCAGTTTGAATGCAACTTTTGTGAGCGTAAGTTCCATCGTAAGGATAACCTTAAGTCGCATATGCGAATGCACGGCGGGCAACAGCTGAATGCTTCAACTATTGCCAGTGAGCAGCAGGACACGATGCAGCAGCGCATGCCGACAGTATTGAGCCACTTGTCTCGTCCCAATGGCTGCAAGCAGATTCAGTGCATGATTTGTCTATCCCAACACGCAAAGATTTCTGATTTGCGAACTCATTTAAGTAGCCATCAGTTTGCACTTAGGTTTTCCGGAGAACGTAGCCAACCGGAGAGCATATCTAGCATTTGTCGTGCTTTCTATCCCGAACTTAGTACGCCGCTGGATAAACAGGATTTAATAAAGCGCATACAGAGTGATCTTGCTAATTGTTTGGAATTGGAAAGATTCATATCGATTACCAGCGAGGCGGGCATTGAGTTAAGCTTAGATAGCAGCGAAACAGATACAGATTCAGATTCAGCAGACAACCAGCGAAGCAGCAATGGACGATTTTACACTTGTGAGCTCTGCCAGGTTCGGGTGACTCGAAAGCATCAGCTCTATGCCCACCAGCTGAAACAGCACACGTGGGAACAGGCAGCGCACGTTTGCAGTCACTGCCAAGCAAGATTTGTAAATGAACAGCTACTGGAACATCACTATCGCACCCTCTGCCGTAATGCCCAGCGTCGATTCATCTGTCGCAAGTGTCCATTACGCTTTCGCTGGCGCGACAATCTTAAGCTGCACGTTGACGTTGCGCATCGGGAAAGGAATATATTACAACATGCCAACAAGGATATTCAGTTGCATAGTTCACGTAGCTACGACTGTGTCGAGTGCAAGCGTAGcttcaaaatgcaaaaagatCTCACAAGGCACACGCTAATGCATACCCAAGAATCGAGCATCTATCGTTGTCATTGGTGCGCACGTCGCTTCTATCGCCAGTCAAATCTGCTGCAGCACATTGAGCGTCATGGCATCAGCGCCGATCAGCTGCCCTATGCGGAGGCCCTGCTCAATGCCAATCGTCATCCTCATGGCCAGAAGTGCATTCAGTGTAAGGTGTGCGAATTACCCTTTGCCAGCATTTCGGCACTGCGTTCCCATCTGACATCAGCTCCAGTTGGCACGCATCATGCAATTGAATCTATGCTCAACTATTCCATTACCGATCAGCTGGGCTATGAGCTGCACTTGGAAGACTCGGAAACGGATGAGGAGGCCAAGCCGAAGGGTACGCCGGCGCATTACACTTGTGGCATGTGCCAGCTGCGATGTGTGCGCAAATTTGAGCTGGTGCAGCATCAGCAGGCCATGCATCGTCTAGAGCGGATCAGCGAGGGATGCGAGCTGTGCATCTTTAAGAGCGTCTCACCGGATCTGATTGCCTATCATCGGCGCGTGCTGTGCGGCAATACGGAAAAACAGTTCAAGTGCTCTAAATGTAGCTACATATTTATGTGGCAATCGAATCTGGAGCAGCACATGCTGCTTCAGCATCCTATCAGCGGGGAGCCGTCTTTAATGCCCGCGTTGGACATTGCCAACTCTGAGGGCCAAATCTTTCAGTGCGGTCAGTGTCCCAGTAAATATAATCGCAAGGATCGTCTAACGGCGCATGTAAAAAAATGTCACGCAGATGGCGCAACAGCTTCCAAAAAGTCGTCAGCAAATGCCAAGCAACAAAAGAGTTTTTTGTGCGCTTTCTGTGGCAAAGCGGTTAGCTCCTCGTCCAATTTAATTATACACATACGTCGACACACGGGAGAGAAGCCATTCAAATGTGATTTCTGTGACATGGCCTTTCCACGATCCTCAGATCTCCAATGCCATCGACGCACCCATACTGGCGAGCGGCCACATGTCTGCACCGTCTGCCAGAAAGGCTTTGCTCGTTCCTACAAGCTGCAGCAGCACATGCGCATTCACAATGGCGAGCGACCCTACAAGTGTACCTACTGCGACAAGAGCTTCACCCAGTCCAATGATCTAACGCTTCACATTCGACGACATACGGGCGAACGTCCCTATCAGTGCAACACGTGCGGCGAAAGATTTATTCAGGGCACAGCTCTGAAAAATCATCGACAGCAGAATGGTCATTTTCAAACCGAAGGTGAGCATCTAAAAGATGACTGA
Protein Sequence: MLPTNVCRTCALQDDNLLALSSHSKKYPERNICDMLDELTHNDPLWEHSDDNLPQHLCGPCLIQLEAAYAFLLQARQAQERLLLQLRKGLQTKCLEEMPIDITLQNIKAEVDIDLYAETNTEMHEEFEVEDADKEEENEKNVAAVSVTALKCLQKSDSDSSEENLDDRDVEFKRPQLRRSARRAKPSTDTENYTTSDLACLQPAPVKRGRGRPARQNKTETINEDGRHMCKVCDKTYSWYRDLQRHERTHFEQAAYVCESCGKKFLRKDKYMFHLRTHEKQAVKVQALQRSGEWRYAERLYSSGRLKCVECKLCGLKCQRIKELREHLASHSNIETLSSLSMDNDVIREQFGNQWDLQQIRQQVCTQIAQGREQLENFCVVVNAYGYELCLSDSDEEVPGVSAQYQCLPCNASFTRKHRLIRHTLEKHSQANETETPWVRCNICQIGFVCGKLLEQHQRTQCLNPLKRYSCDNCPGKFIWLQNLQQHDCSRLQQDQQQAYQQIQCCLCDAKLNSMSALRSHLLTHRDGHTGIDPQQDAAFFRTYYQVDMDCNISELSARIAGDFQSQNVGRYFNACTDSGQELDFNDSDTALSNAPILHSCAVCGESTQALAQLQQHQESQHNELDKKLPHICADCGLGFVSKSLLQQHRRRICGKLQAKYNCRECNQRFYWLSNYERHMQLKHAVGTGEAPIEKQKLQTTKLQCTECDKVFIWPKDLTRHKRMHQSQVQFECNFCERKFHRKDNLKSHMRMHGGQQLNASTIASEQQDTMQQRMPTVLSHLSRPNGCKQIQCMICLSQHAKISDLRTHLSSHQFALRFSGERSQPESISSICRAFYPELSTPLDKQDLIKRIQSDLANCLELERFISITSEAGIELSLDSSETDTDSDSADNQRSSNGRFYTCELCQVRVTRKHQLYAHQLKQHTWEQAAHVCSHCQARFVNEQLLEHHYRTLCRNAQRRFICRKCPLRFRWRDNLKLHVDVAHRERNILQHANKDIQLHSSRSYDCVECKRSFKMQKDLTRHTLMHTQESSIYRCHWCARRFYRQSNLLQHIERHGISADQLPYAEALLNANRHPHGQKCIQCKVCELPFASISALRSHLTSAPVGTHHAIESMLNYSITDQLGYELHLEDSETDEEAKPKGTPAHYTCGMCQLRCVRKFELVQHQQAMHRLERISEGCELCIFKSVSPDLIAYHRRVLCGNTEKQFKCSKCSYIFMWQSNLEQHMLLQHPISGEPSLMPALDIANSEGQIFQCGQCPSKYNRKDRLTAHVKKCHADGATASKKSSANAKQQKSFLCAFCGKAVSSSSNLIIHIRRHTGEKPFKCDFCDMAFPRSSDLQCHRRTHTGERPHVCTVCQKGFARSYKLQQHMRIHNGERPYKCTYCDKSFTQSNDLTLHIRRHTGERPYQCNTCGERFIQGTALKNHRQQNGHFQTEGEHLKDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01326581;
90% Identity: iTF_01324290;
80% Identity: -