Sgra002931.1
Basic Information
- Insect
- Scaptomyza graminum
- Gene Symbol
- -
- Assembly
- GCA_018901835.1
- Location
- JAEIFL010000303.1:573498-579581[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.00038 0.025 14.8 2.7 1 23 228 250 228 250 0.97 2 26 3.6e-05 0.0023 18.1 2.8 1 23 256 278 256 278 0.98 3 26 0.053 3.4 8.1 0.7 2 23 310 331 309 331 0.96 4 26 0.0013 0.083 13.2 1.1 1 23 405 428 405 428 0.94 5 26 0.47 31 5.1 0.8 2 22 440 460 439 460 0.95 6 26 3.8 2.5e+02 2.2 0.4 1 19 469 487 469 489 0.91 7 26 0.28 18 5.8 0.4 2 23 505 526 504 526 0.97 8 26 0.053 3.4 8.1 0.2 1 23 600 623 600 623 0.94 9 26 4.6e-05 0.003 17.7 0.4 1 22 632 653 632 653 0.94 10 26 0.18 12 6.4 3.6 1 23 662 685 662 685 0.96 11 26 0.00018 0.011 15.9 0.4 2 23 705 726 704 726 0.97 12 26 1e-05 0.00068 19.7 6.5 1 23 732 754 732 754 0.98 13 26 0.14 9.1 6.8 0.5 1 23 900 923 900 923 0.94 14 26 0.0027 0.18 12.1 3.1 1 22 930 951 930 951 0.96 15 26 0.025 1.6 9.1 0.3 1 23 960 983 960 983 0.93 16 26 5.2e-05 0.0034 17.5 1.6 1 23 1004 1026 1004 1026 0.97 17 26 2.3e-05 0.0015 18.7 3.0 1 23 1033 1055 1033 1055 0.98 18 26 0.15 9.9 6.6 0.0 2 21 1082 1101 1081 1102 0.93 19 26 0.0036 0.23 11.8 2.2 1 23 1147 1170 1147 1170 0.96 20 26 0.0041 0.27 11.6 3.3 1 23 1207 1230 1207 1230 0.96 21 26 0.013 0.82 10.0 3.0 1 23 1252 1275 1252 1275 0.97 22 26 1.2e-05 0.00078 19.6 0.1 2 23 1296 1317 1295 1317 0.95 23 26 0.0002 0.013 15.7 3.1 1 23 1323 1345 1323 1345 0.99 24 26 4.5e-06 0.00029 20.9 1.9 1 23 1351 1373 1351 1373 0.97 25 26 1.6e-07 1e-05 25.5 4.2 1 23 1379 1401 1379 1401 0.99 26 26 0.00087 0.057 13.7 0.2 1 21 1407 1427 1407 1431 0.91
Sequence Information
- Coding Sequence
- ATGTTGCCCTCCAATGTTTGTCGTACATGTGCGCTACAAGACGACAATTTGTTGGCGTTATCGTCGCGTAGTAAAATATACCCAGAAATAAGTATTTGGGACATGTTCCACGAATTAACACAAAACGATCCTCTGTGGGAGCACTCAGATGAGAATCTGCCGCAGCATGTGTGCGGCCCATGTTTGAGCCAGATGGAAGTTGCCTATGCATTTGTGCTGCAGGCTCGCCAGGCTCAGGAGCGACTGTTGCTGCAGCTACGCAAAGGAATGCAAACAAAGTGTTTGGAAGAAATGCCCATTGATATTACGCTAGAGAACATCAAAACCGAACTGGACATTGACTTAGATTCTGAGACCATCACAGAAATGAATGAGGGATTTCAGACCGAAGATGCTGATATGGAGGAGGAGAATGAGAAAAGTGTTGCCGCTGTGTTTGCCACTGCCGTGAAATACCTCCAAAAAATTGATAGCGATAGCAGTGAAGAAAACTTAGATGACGATGATGTTGAGTACAAGCCCCCGCAGCTTCGCCGAAGTGCAAGGAGAGCCAAACCCAGCACTGATAGCGAAACTGATTCGACATCTAGTCTAGCAAATCTCCAGACAGCAACAGTTAAGCGCGGTCGTGGGCGTCCCGCACGTCAAAACAACACGCAGACCATCACCGAGGATGGCCGGCACATGTGTAAGGTGTGTGGCAAGACGTACTCGTGGTATCGCGACTTGCAGCGCCATGAGCGCACACATTTTGAGCAGCCGGCCCATGTGTGCGAGAGTTGCGGCAAGGAATACTCGCGCAAGGATAAATACATGAACCATCTGCGAACGCACGAGAAGCAAGCAGTTAAAGTGCAGGCGCTGCAGATGAGCAGTGAATGGCGCTACGCTGAGAGTCTCTACAGTTCGGGTCGTCTCAAGCGTGTTGAGTGCAAGCTGTGCGGCTTAAAGTGCCAGCGCATACAGGAATTGCGTGAGCATTTAGCAAGTCATTCGAACATTGAGACACTGTCAAATCTCAGTATGGACAACGATGTCATCAGGGAGCAATTTGGCAACCAATGGGATTTGGAACAGATTAGGCAAACAGTGTGCACAGAAATAGCTAAAGGTCGCGAACAGCTGGATAACTTCTGTGCTGTTGTAAATACTTACGGCTATGAGCTGTGCCTTAGCGACTCGGACGAGGAGTTGCCTGGCGTGTCGGCTCAATATCAATGCCCGCCCTGCAATGCCAGCTTTACACGCAAACATCGCCTCATACGGCACACCTTGGAGGAGCACACTCGATCAAACCAAACTGAAACGCCTTGGATGCGCTGCAATATCTGCCAAATAGGCTTTGTTTGTGCCAAACTGTTTGAGCAACATCAGCGCACACAGTGCCTTAATCCGCTAAAGCGTTACAGCTGCGACAACTGTCCCGGCAAATTTATATGGCTACAGAATCTACAGCAGCACGCTTGCTGTAGACTGCAACAACAGGATCAGCAACAGGCTTATCGAAAAATTCAGTGCTGCCTGTGCGATGCCAAACTAAACAGCATGCCCGCTTTGCGCTCCCATTTAATTACGCATCGCGATGGACACACTGGCATCGATCCGCAGCAGGAAGCCGCCTTCTTTCGCACCTATTATCAAGTTAATATGGACTGCAATCTGACAGAGCTCCGTGCACGCATAGCTGGCGATTTTGAATCACAAAATGTTGGATGCTACTTTAATGCCTGCACGGACAGCGGCCAGGAATTGGACTTCAATGATTCGGACAGTGCCTTAAGCGATGCACCTGCTCTGCACAGTTGTGAAGTGTGTGGTGAGAGTACTCAAGCTCTCGCCCAGTTGCAAGAACATCAGGATAGTCAGCACAATGAACTGGATATAAGGCTGCCTCATATATGCACTGATTGTGGTTTGGGATTTGTGTCTAAATCGCTGCTTCAGCAACATCGTCGGCGTATCTGTGCCAAGTTGCAAGCTAAGTACAATTGCCGGGAATGCAGTCAGCGCTTTTATTGGCTCCACAACTATGAACGACACATGCAGCTGAGGCATGCTGTTGCAACCAGAGAGTTTCGGATTAAGAAACACAAGCGGCCAACAACAAAGTTGCAGTGCACCGAATGCGAAAAGGTATTTATCTGGCCCAAGGATCTAACGCGTCACAAACGCATGCATGAGTCACAGGAGCAGTTTGAATGCAACTTTTGTAAGCGCAAGTTCCATCGTAAGGATAACCTTAAGTCGCATATGCGAATGCACGCCGAGCAACAGCCGGATGCGTCGACTATTGCCAGTGAGCAGCAGGACACGAAGCAGCCGGTAGTATTGAGCCACCTGTGCCGTCCCAATGGCTGCAAGCAGATTCAGTGCATGATTTGTCTTTCCCAACACACAAAGATCTCCGATTTGCGAACTCATTTAAGTAGCCATCAGTTTGCGCTTAGGTTTTCCGGAGAACGCAGTCAACAAGAGATCATATCGAGCATTTGTCGTGCTCTCTATCCCGAACTAAGCACGCCGCTGGATAAACAGGACTTAATAAAGCGCATACAAAGTGATCTTGCCAATGATGTGGAACTAGAAAGATTCATATCGATTACCAACGAGGCGGGCATTGAGTTAAGCTTAGATAGCAGCGAAACAGATACAGATTCAGATTCAGCAGACAACCAGCGAAGCAGCAACGAACGATTGTACACTTGTGATCTTTGCCCGGTTTGGGTGACTCGAAAGCATCAGCTCTATGCCCACCAGCTGGAACAGCACAAGTGGGAACAGGCACCGCACGTTTGCAGCCACTGCCAAACAAGATTTGTAAATGAACAGCTACTGGAGCATCACTATCGCACCCTCTGCCGTAATGCCCAGCGTCGTTTCCTCTGTCGCAAGTGTCCATTACGCTTTCGCTGGCGCGACAATCTTAAGCTACACATTGACGTTGCGCATCGGGATGGGAATACACGACAACAGGCCAACCTGGATACTCAGTTGCAGGGTTCACGTAGCTACGACTGTGTCGAGTGCAAGCGTAGCTTCAAAATGCAAAAAGATTTGACAAGGCACACGCTAATGCATACCCAGGAGTCGAGCATCTATCGTTGTCATTGGTGCGCACGTCGCTTCTATCGCCAGTCCAATCTGCTGCAGCACATTGAGCGTCATGGCATCAGCGCCGAACAGCTGCCCTATGCGGAGGCCCTGCTCAATGCCAATCGTCATCCTCATGGCCAAAAGTGCATTCAGTGTAAGGTATGCGAAATACCCTTTGGCAGCATTGCAGCACTGCGTTCCCATCTGGAATCAGCTCCAGTTGGCACGCATCATGCCATTGAATCGATGCTCAACTATTCCATTACCGATCAGCTGGGCTATGAGCTGCACTTGGAGGACTCGGAAACGGATGAGGAGGCGAAGCCGAAGGGTACGCCAGCGCATTACACTTGTAGCATGTGCCAGCTGCGCTGTGTGCGAAAATTCGAGCTGATACAGCATCAGCAGGCCATGCATCGTCTAGAGCGGATCAGTGAGGGATGCGATCTGTGCATCTTTAAGAGCGTCTCGCCGGATCTGATTGCCTATCATCGGCGCGTGCTGTGCGACAATACGGAGAAACAGTTCAAGTGCTCCAAATGTAGCTACAGATTTATGTGGCAATCGAATCTTGAGCATCACATGCTGCTACAGCATCCCAGCAGTGGCGAGCTGCCTTTAATGCCTGAGTCGGTCATTGCCAACTCTGGGAGCCAAATATTTCAGTGCGGTCAGTGTCCCAGTAAATATAATCGCAAGGATCGCCTTAATGCGCATGTGAAAAAATGTCACGCAGGTGGAGCAACAGTTTCCAAAAAGTCGCCAGCGACTGAAAAGCAACAAAAGAGTTTCTTGTGCGCTTTTTGTGGCAAAGCGGTTAGCTCGTCGTCCAATTTAATTATACACATACGTCGACACACGGGAGAGAAGCCATTCAAATGCGATTTCTGTGACATGGCCTTTCCACGATCCTCCGATCTCCAATGCCATCGACGCACCCATACCGGCGAGCGACCACATGTCTGCACCGTCTGCCAGCGGGGCTTTGCTCGCTCCTACAAGCTGCAGCAGCACATGCGCATTCACAATGGCGAGAGACCCTACAAGTGTACCCACTGCGACAAGAGCTTCACCCAGTCCAATGATCTAACGCTCCATATACGACGACATACGGGCGAACGTCCCTATCAGTGCGACACGTGCGGCGAAAGATTTATTCAGGGCACAGCTCTGAAAAATCATCGACTGCAGAATGGTCACTATCAAACCGAAGTCGAACAACTAAAAGATGACTGA
- Protein Sequence
- MLPSNVCRTCALQDDNLLALSSRSKIYPEISIWDMFHELTQNDPLWEHSDENLPQHVCGPCLSQMEVAYAFVLQARQAQERLLLQLRKGMQTKCLEEMPIDITLENIKTELDIDLDSETITEMNEGFQTEDADMEEENEKSVAAVFATAVKYLQKIDSDSSEENLDDDDVEYKPPQLRRSARRAKPSTDSETDSTSSLANLQTATVKRGRGRPARQNNTQTITEDGRHMCKVCGKTYSWYRDLQRHERTHFEQPAHVCESCGKEYSRKDKYMNHLRTHEKQAVKVQALQMSSEWRYAESLYSSGRLKRVECKLCGLKCQRIQELREHLASHSNIETLSNLSMDNDVIREQFGNQWDLEQIRQTVCTEIAKGREQLDNFCAVVNTYGYELCLSDSDEELPGVSAQYQCPPCNASFTRKHRLIRHTLEEHTRSNQTETPWMRCNICQIGFVCAKLFEQHQRTQCLNPLKRYSCDNCPGKFIWLQNLQQHACCRLQQQDQQQAYRKIQCCLCDAKLNSMPALRSHLITHRDGHTGIDPQQEAAFFRTYYQVNMDCNLTELRARIAGDFESQNVGCYFNACTDSGQELDFNDSDSALSDAPALHSCEVCGESTQALAQLQEHQDSQHNELDIRLPHICTDCGLGFVSKSLLQQHRRRICAKLQAKYNCRECSQRFYWLHNYERHMQLRHAVATREFRIKKHKRPTTKLQCTECEKVFIWPKDLTRHKRMHESQEQFECNFCKRKFHRKDNLKSHMRMHAEQQPDASTIASEQQDTKQPVVLSHLCRPNGCKQIQCMICLSQHTKISDLRTHLSSHQFALRFSGERSQQEIISSICRALYPELSTPLDKQDLIKRIQSDLANDVELERFISITNEAGIELSLDSSETDTDSDSADNQRSSNERLYTCDLCPVWVTRKHQLYAHQLEQHKWEQAPHVCSHCQTRFVNEQLLEHHYRTLCRNAQRRFLCRKCPLRFRWRDNLKLHIDVAHRDGNTRQQANLDTQLQGSRSYDCVECKRSFKMQKDLTRHTLMHTQESSIYRCHWCARRFYRQSNLLQHIERHGISAEQLPYAEALLNANRHPHGQKCIQCKVCEIPFGSIAALRSHLESAPVGTHHAIESMLNYSITDQLGYELHLEDSETDEEAKPKGTPAHYTCSMCQLRCVRKFELIQHQQAMHRLERISEGCDLCIFKSVSPDLIAYHRRVLCDNTEKQFKCSKCSYRFMWQSNLEHHMLLQHPSSGELPLMPESVIANSGSQIFQCGQCPSKYNRKDRLNAHVKKCHAGGATVSKKSPATEKQQKSFLCAFCGKAVSSSSNLIIHIRRHTGEKPFKCDFCDMAFPRSSDLQCHRRTHTGERPHVCTVCQRGFARSYKLQQHMRIHNGERPYKCTHCDKSFTQSNDLTLHIRRHTGERPYQCDTCGERFIQGTALKNHRLQNGHYQTEVEQLKDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01326581;
- 90% Identity
- -
- 80% Identity
- -