Spal016922.1
Basic Information
- Insect
- Scaptomyza pallida
- Gene Symbol
- -
- Assembly
- GCA_018152965.1
- Location
- JAECXP010000002.1:1423695-1427391[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 8.6e-05 0.0063 17.0 0.7 1 23 219 242 219 242 0.95 2 17 0.012 0.86 10.2 2.2 2 23 250 271 249 271 0.96 3 17 0.073 5.4 7.7 0.2 2 23 303 324 302 324 0.95 4 17 0.016 1.2 9.8 6.2 1 23 414 437 414 437 0.97 5 17 0.074 5.5 7.7 0.5 1 19 444 462 444 464 0.94 6 17 0.0069 0.51 10.9 4.0 1 23 474 496 474 496 0.95 7 17 2.8e-06 0.00021 21.6 0.9 1 23 503 526 503 526 0.97 8 17 8.7e-05 0.0064 16.9 1.2 2 23 534 555 533 555 0.96 9 17 0.0037 0.27 11.8 0.2 2 21 582 601 581 602 0.94 10 17 0.012 0.92 10.1 2.2 1 23 657 680 657 680 0.96 11 17 0.0058 0.43 11.2 0.5 2 23 718 740 717 740 0.95 12 17 0.00013 0.0097 16.4 1.6 2 23 773 795 772 795 0.95 13 17 0.00083 0.061 13.9 0.3 1 23 809 831 809 831 0.95 14 17 0.00011 0.0079 16.6 1.2 1 23 837 859 837 859 0.99 15 17 3.4e-07 2.5e-05 24.5 2.6 1 23 865 887 865 887 0.98 16 17 5.4e-06 0.0004 20.7 2.2 1 23 893 915 893 915 0.98 17 17 0.0012 0.087 13.4 0.2 1 23 921 945 921 945 0.91
Sequence Information
- Coding Sequence
- ATGAAGCTGCCGGTCATGTGTCGCACTTGTGATGCAAGGGAAACGGATAAATTGTATAAGCTGGCAACGGCAACAAAAAGATTTCCAGATAAACAACTTTCGGACATTTTAGTCGAATTGACCCATATCGATGTAAATGAAACGATGGCACAACATCTGCCACAATGTCTGTGTAGCAATTGCGCTCGAAAATTAATCGGTGCCTATTACTATGTGAAGCAGGCGCTGGCCGCCAATGAGCTGCTGATACACCATGTGGAACGCATGGATGGCGGCGACAAGCCGGGTGTAAATGATTGTCTGCGCGAAGCACCAATGGAGATGTGCGCTGAACAGCATGTTGAGGTTAAACTGGAAACGGAGGAGGAGGACATTGAAAATGATATAACTTGTACGGAACTGCCCGAATTTACAATAGTACAAAATTCTATTGATGCGGAAGTTGACGTTATAGATGATCTGGATACCAAAAAGACTACAGATCCGCTTAATATGTTTGATCCCGTCAAACAGGAAGAGGATTCCCTAGCAAAACCAACTCAAGAGCTGAAAGCAGCCAACGATGAAGACGACTCTCTGGATGATTTGCCCTTGCAACAGCGTGTTAGAAAGTGGAAACAAAGAGCTAAAGTGCACACTATTAAGCGAGCTGGATTCAAGTGCAAGGAATGTCCAAAGAGCTTTAAGAGAATCGAGCTAGTAAAACAGCATGCATCACGAGCACACAAATCTAAAACCGATTGGTTGTCCTGCTCCTTCTGCATACGCAAGTTCAGTCATCGGGAAGCGCTACAAATGCATCTCAAGGTGCATCGCGACTCCAAGCGTTCAGCGAATCTGGGCGAGAGCAAAAAGGCCAAGGACATCGATGTGAATGTGTGCAAACCGCATGGCTATAAGCTCATCGAGTGCATGATCTGTCAAACGCAATACGATAAAATTGTGGATTTGCGACGGCATCTCGAGCAGCATCCAGAGATTGTGAACTTTGGGGCACGCTCCAATATGCAGCCGCACGAACTGGCCGAACTCTTCTATCCCGATGCCAAAGATATCAGTGTGGATCATCTAAAGGCTCTGATACGCAAAGATTTGTCCGCAGGCATCTATCAGCGTTTCTATTCCATTACTAATCAATCCGGCTACGAAATGGATCTGGACAGTTCGGAAACAGAAAGCGAAGCTGAACAAGATGCCGACGAGCTGTCGAATCAACAGCGCAGCATTCCCAAAGCCAAATACAGTTGCGAATTGTGCCATGAGCGTTGCCAGCGTAAATATCAGCTATACGATCATCAGCGCCAGATGCATGCCTGGCTCGATGCTCCTCATGTTTGTGGTCGTTGCGATGCGCGCTTTGTCAGTCTGCAGTTGCTGCGGCATCACAACGAGCTGCAATGCAAGAATGCCCAAAAACGTTTTCTGTGCCACAGGTGTCCGCTACGCTTTCGGTGGCGCCACAATCTGAAGGCTCACATACGCGAACATCGCATTATTAATCAAACGTTTGAGTGCAATGATTGCAAGCGCGTCTTTGACAAAAAGAAATCGTTGACAGTGCACATGCTCAGCGTGCATGCGGAGCAATCGAAGCTAATACCATGTCAATGGTGTACCCGCAAATTCTATCGTCGTGACTATTTGGTGAAGCATCTGAAGCGTCATGGCATACGCGAACAGGATATACCGCTGGCTGAGACGCTTATTGCTGCGACATCTAAACCAAATGGCGCCAAACAGATTACGTGTAAGATTTGTAATCTGCACTTTGAACGCATCAACGATCTGCGCATTCATATTCAGCTGGAACTGAAGCTGGCGCTATCGTTGCATCAGAGCTATGATTCGCCCAACAATTACTCCATCACCAATGAATCCGGCTACGAGCTGCAGCTGGGCGACTCCGAGACGGAGGATGAGCTGCATATGGACTCATCATCAGCATCAGCACCTGGCACACGTTCCGTCTATGTCTGCGAACTGTGTAAAGTGCAATGCAAGCGCAAATTCGAGATGATTCAGCATCAGCGTGCCATGCATCGTTTCGACAAAATGCCATACGAGTGTGAATCGTGCATATTCAAGTGTGTCTGCAAGAGCATCATGGATCAGCATCGGCAATCACAATGCCATAGCACGGATAAGAAATTGTCGTGTGGCAAATGCAGTTACAAGTTCATGTGGCCCGAGAATCTGCAACAACACATGCGCCTGCAACATGGCACCCTAGTGGATGCTGCGGAGGCCAGTGCTGATCGCATTCCAGCCATACCCGGTGATCCCGGTGCAGCTCCTGCTGATGGTGTACAGCTGCTTCAATGTCCACACTGTGATCGCACATATCAGATGAAGTCCAGGCTCAACAATCACATACGGGATGTGCACATCAATGGTGATCGCAAGCGCAAGGAGGCCATCAAAAAGTTTCTCTGCTCGCTTTGCGGCCGTGAGACACAATCCGCCGCCACCCTGGTCACCCATATGCGTCGTCATACGGGCGAAAAGCCCTTCAAATGCGATCTGTGCGAAATGGCATTTCCCCGGCACTCCGAAATGATATCGCATCGACGCATGCATACGGGCGAGAAGCCCTTTCATTGTACTGTCTGTGGCAAGGATTTTGCACGCTCGGACAAGCTGAAACGACACATGCTCACGCACAGTGGTCTGAAGCCATACAAATGCACCTACTGCGAAAAGAGCTATCGTCAGGCCAAGGATCTGAAATTGCATCTGCAACAGCATACGGGTGAATGTACATTTGTTTGTGGCACTTGTGGCGAACGCTTCATTCAGGGCACAGCCCTAGAGAAGCATCGCATGATGCGACGTCATTTCGACGAGGTGGATGAGCGTGCGACAAGCACAATAACTGCTAGCTAG
- Protein Sequence
- MKLPVMCRTCDARETDKLYKLATATKRFPDKQLSDILVELTHIDVNETMAQHLPQCLCSNCARKLIGAYYYVKQALAANELLIHHVERMDGGDKPGVNDCLREAPMEMCAEQHVEVKLETEEEDIENDITCTELPEFTIVQNSIDAEVDVIDDLDTKKTTDPLNMFDPVKQEEDSLAKPTQELKAANDEDDSLDDLPLQQRVRKWKQRAKVHTIKRAGFKCKECPKSFKRIELVKQHASRAHKSKTDWLSCSFCIRKFSHREALQMHLKVHRDSKRSANLGESKKAKDIDVNVCKPHGYKLIECMICQTQYDKIVDLRRHLEQHPEIVNFGARSNMQPHELAELFYPDAKDISVDHLKALIRKDLSAGIYQRFYSITNQSGYEMDLDSSETESEAEQDADELSNQQRSIPKAKYSCELCHERCQRKYQLYDHQRQMHAWLDAPHVCGRCDARFVSLQLLRHHNELQCKNAQKRFLCHRCPLRFRWRHNLKAHIREHRIINQTFECNDCKRVFDKKKSLTVHMLSVHAEQSKLIPCQWCTRKFYRRDYLVKHLKRHGIREQDIPLAETLIAATSKPNGAKQITCKICNLHFERINDLRIHIQLELKLALSLHQSYDSPNNYSITNESGYELQLGDSETEDELHMDSSSASAPGTRSVYVCELCKVQCKRKFEMIQHQRAMHRFDKMPYECESCIFKCVCKSIMDQHRQSQCHSTDKKLSCGKCSYKFMWPENLQQHMRLQHGTLVDAAEASADRIPAIPGDPGAAPADGVQLLQCPHCDRTYQMKSRLNNHIRDVHINGDRKRKEAIKKFLCSLCGRETQSAATLVTHMRRHTGEKPFKCDLCEMAFPRHSEMISHRRMHTGEKPFHCTVCGKDFARSDKLKRHMLTHSGLKPYKCTYCEKSYRQAKDLKLHLQQHTGECTFVCGTCGERFIQGTALEKHRMMRRHFDEVDERATSTITAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00519319;
- 90% Identity
- iTF_01325800; iTF_01328025; iTF_01321326;
- 80% Identity
- -