Scyr010395.1
Basic Information
- Insect
- Scaptomyza cyrtandrae
- Gene Symbol
- -
- Assembly
- GCA_035044605.1
- Location
- JAWNNS010000640.1:19294018-19297213[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.8e-05 0.0013 19.1 2.3 1 23 222 245 222 245 0.95 2 17 0.012 0.89 10.2 2.2 2 23 253 274 252 274 0.96 3 17 0.047 3.4 8.4 0.1 2 23 306 327 305 327 0.95 4 17 0.073 5.4 7.8 4.2 1 23 417 440 417 440 0.97 5 17 0.076 5.6 7.7 0.5 1 19 447 465 447 467 0.94 6 17 0.0071 0.53 10.9 4.0 1 23 477 499 477 499 0.95 7 17 2.9e-06 0.00021 21.6 0.9 1 23 506 529 506 529 0.97 8 17 8.9e-05 0.0066 16.9 1.2 2 23 537 558 536 558 0.96 9 17 0.009 0.66 10.6 0.2 2 21 585 604 584 605 0.94 10 17 0.023 1.7 9.3 2.2 1 23 658 681 658 681 0.96 11 17 0.026 1.9 9.2 2.2 2 23 719 741 718 741 0.95 12 17 0.00013 0.01 16.4 1.6 2 23 782 804 781 804 0.95 13 17 0.00085 0.063 13.8 0.3 1 23 818 840 818 840 0.95 14 17 9e-05 0.0067 16.9 1.3 1 23 846 868 846 868 0.99 15 17 3.5e-07 2.6e-05 24.5 2.6 1 23 874 896 874 896 0.98 16 17 5.5e-06 0.00041 20.7 2.2 1 23 902 924 902 924 0.98 17 17 0.0012 0.089 13.4 0.2 1 23 930 954 930 954 0.91
Sequence Information
- Coding Sequence
- ATGAAGCTGCCTGTCATGTGTCGCACTTGCGATGCAAGGGAAACGGATAAACTTTACAAgctggcaacggcaacaaaaagATTTCCGGATAAACAGCTTTCGGACATCTTAGTCGAGCTGACCCACATTGAGATAAATGAAACATTGGCGCAACATCTGCCACAATGTCTGTGCGGCAATTGCGCTCGAAAATTAATCGGCGCCTATTACTTTGTAAAGCAGGCGCTGGCCGCCAATGAGCTGCTGATGCACCATGTGGAACGTATGGACGGCGACAAACCAGGTGTAAACGATTGCCTGCGCGAGACACCCATGGAGATGTGCGCGGAGCAGCATGTTGAGGTTAAATTAGAAACTGAGGAGGAGGATATTGATAATGATATAACCTGCACAGAACTACCCGAGTTTACTACAGTACAAAATTCCATTGATGTAGAACTAGATGTTGTAGATGaacttcaaaacaaaaaatccgcAGATCCACTCAACATGTTCGATCCAGTTAAACAGGAAGAGGATGCtctaacaaaagcaacacatGCGCAGACACAAGAATTTAAGGCTGACATTGACGGAGAAGACTCTCTAGATGATTTGCCTTTGCAACAACGTGTAAGAAAGTGGAAACAAGCAGCTAAAGTACCCACTATAAAGCGAACAGTATTTAAGTGCAAAGAATGTCCAAAGAGTTTTAAGCGAATCGAGCTATTAAAACATCATGCAACACGGGctcacaaattaaaaactgatTGGTTGTCGTGCTCCTTCTGCATACGCAAGTTTAGTCATCGGGAAGCTCTACAAATGCATCTGAAGGTGCATCGCGACTCGAAGCGGTCAGCGAATCTGGGTGAGAGTAAAAAGGCTAAGGATATCGATGTGAATGTGTGCAAACCGCATGGATATAAACTTATCGAATGTATGATCTGTCAAACTCAATACGATAAAATTGCGGATTTGCGACGTCATCTAGAACAGCATCCAGAGATTGTTAACTTTGGTGCACGCTCGAATATGCAACCGCACGAGCTGGCCGAATTATTCTATCCCGATGCCAAGGATGTCAGCGTGGATCAGCTGAAGGCGCTTATTCGCAAAGATTTGTCAGCTGGCATCTATCAGCGTTTCTATTCCATTACCAATCAGTCCGGCTATGAAATGGATTTGGACAGCTCCGAAACGGAAAGCGAAGCTGAGCTAGATACCGATGAGCAGTCAAAGCAACAGCGTAGCATACCCAAACCCAGATATAGTTGCGAATTGTGCTACGTGCGATGCCAGCGTAAATATCAGCTCTATGATCATCAGCGGCAGATGCACGCCTGGCTAGATGCGCCTCATGTTTGCGGTCGTTGCGATGCACGCTTCGTCAGCCTTCAGTTGCTGCGGCATCACAACGAGCTTCAATGCAAGAATGCCCAGAAACGCTTCCTGTGCCACAGGTGTCCGCTGCGCTTTCGCTGGCGGCACAATCTCAAGGCTCACATACGAGAGCATCGCATTATTAATCAAACATTCGAGTGCAACGATTGCAAACGCGTCTTTGACAAGAAGAAATCGCTGACGGTGCACATGCTCAGCGTGCATGCAGAGGAATCGAAACTAATACCATGTCAATGGTGTACCCGCAAGTTCTATCGTCGTGACTATTTGGTAAAGCATCTGAAGCGGCATGGAATACGCGAACAGGATATACCACTGGCCGAGACGCTCATTGCAGCCACATCAAAACCAAATGGCGCCAAACAGATCACCTGTAAGATTTGTAATTCTCATTTCGAACGCATCAACGATCTACGCGCTCATATTCAGCTAGAACTCAAGCTGGCGCTATCATTGCATCAGAATTATGATTCGCCACACAATTACTCCATCACGAATGAGTCTGGATACGAATTGCAGCTGGGCGACTCCGAGACGGAGGATGAGTTGCATATGGAGCCCACTGCCTCGCCAGGCACACGTTCTGTCTACATCTGCGAACTGTGTAAAGTGCAGTGCAAGCGCAAATTCGAGATGATTCAGCATCAGCGTGCCATGCATCGTTTTGATAAGATGCCATACGAGTGTGAAATATGCATATTCAAGTGTGTCTGCAAGAGCATCATGGATCAGCATCGGCAATCACAATGCCATAGCACAGAGAAGAAGCTGTCGTGTGGCAAATGCAGTTATAAATTCATGTGGCACGACAATTTGCAGCAACATATGCGTCTGCAACACGGCGCCGGCGGCACTGATGGCACCCCAGTGGATTCAAATGAATCCAGTGCTGATCGCATACCAGCCATTCCAGCCATACCAAGTGATCCCGCAGCTCTAGGTGAAGGTGTGCAGCTGTTGCAGTGTCCACACTGCGATCGCACATATCAGATGAAGTCACGGCTCAACAATCACATACGGGATGTGCACATCAATGGAGATCGCAAGCGGAAGGAGGCGATCAAGAAGTTCCTGTGCTCGCTGTGCGGCCGAGAAACGCAATCCGCAGCCACACTGGTCACCCACATGCGACGTCACACGGGCGAGAAGCCCTTCAAATGCGATCTGTGTGAAATGGCGTTCCCACGTCACTCCGAAATGATACAACATCGACGTATGCATACGGGCGAGAAGCCATTCCATTGCACTGTCTGTGGCAAGGATTTCGCGCGCTCCGACAAGCTGAAACGGCACATGCTCACACACAGTGGCTTGAAGCCATACAAGTGCACCTACTGCGAAAAGAGCTATCGGCAGGCTAAGGATCTGAAACTGCATCTGCAACAGCACACCGGCGAATGTACATTTGTTTGCGGCACCTGTGGCGAACGCTTCATTCAGGGCACAGCGCTGGAGAAGCATCGCATGATGCGGCGTCACTTTGACGAGGTGGATGAACGTGCGACAAACACAATAACTGCATAA
- Protein Sequence
- MKLPVMCRTCDARETDKLYKLATATKRFPDKQLSDILVELTHIEINETLAQHLPQCLCGNCARKLIGAYYFVKQALAANELLMHHVERMDGDKPGVNDCLRETPMEMCAEQHVEVKLETEEEDIDNDITCTELPEFTTVQNSIDVELDVVDELQNKKSADPLNMFDPVKQEEDALTKATHAQTQEFKADIDGEDSLDDLPLQQRVRKWKQAAKVPTIKRTVFKCKECPKSFKRIELLKHHATRAHKLKTDWLSCSFCIRKFSHREALQMHLKVHRDSKRSANLGESKKAKDIDVNVCKPHGYKLIECMICQTQYDKIADLRRHLEQHPEIVNFGARSNMQPHELAELFYPDAKDVSVDQLKALIRKDLSAGIYQRFYSITNQSGYEMDLDSSETESEAELDTDEQSKQQRSIPKPRYSCELCYVRCQRKYQLYDHQRQMHAWLDAPHVCGRCDARFVSLQLLRHHNELQCKNAQKRFLCHRCPLRFRWRHNLKAHIREHRIINQTFECNDCKRVFDKKKSLTVHMLSVHAEESKLIPCQWCTRKFYRRDYLVKHLKRHGIREQDIPLAETLIAATSKPNGAKQITCKICNSHFERINDLRAHIQLELKLALSLHQNYDSPHNYSITNESGYELQLGDSETEDELHMEPTASPGTRSVYICELCKVQCKRKFEMIQHQRAMHRFDKMPYECEICIFKCVCKSIMDQHRQSQCHSTEKKLSCGKCSYKFMWHDNLQQHMRLQHGAGGTDGTPVDSNESSADRIPAIPAIPSDPAALGEGVQLLQCPHCDRTYQMKSRLNNHIRDVHINGDRKRKEAIKKFLCSLCGRETQSAATLVTHMRRHTGEKPFKCDLCEMAFPRHSEMIQHRRMHTGEKPFHCTVCGKDFARSDKLKRHMLTHSGLKPYKCTYCEKSYRQAKDLKLHLQQHTGECTFVCGTCGERFIQGTALEKHRMMRRHFDEVDERATNTITA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00519319;
- 90% Identity
- iTF_01325061;
- 80% Identity
- -