Spal009250.1
Basic Information
- Insect
- Scaptomyza pallida
- Gene Symbol
- -
- Assembly
- GCA_018152965.1
- Location
- JAECXP010000005.1:5525860-5532014[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.5e-12 9.2e-09 34.9 0.0 1 41 287 328 287 331 0.90 2 4 2.1e-14 5.4e-11 42.1 0.1 2 39 342 379 341 382 0.94 3 4 4.7e-18 1.3e-14 53.7 0.0 1 45 396 441 396 441 0.98 4 4 4.5e-20 1.2e-16 60.2 0.0 1 43 448 491 448 492 0.96
Sequence Information
- Coding Sequence
- ATGGATAATGGTCTATTGCGTACCGCGGAACAATTGAAAATAAAGGGTCTGTGTGAGCCGGCTGAAAACGCGGATGATTTGAATGACGCTGCATCTGCGACAATAACCGGACAGAATCAAACATCGATTGTGAGTCTACAGCAAACGGCCGACGGCAATTATATACCCATTGGTTCAGCTGGTGACGACTCCGATAGCGATAATAAGCCACAAAAGATCTGCAAGACAGAGCAATCGGTGGCTTCGCCGGCATCCAACTCGTCCACATCGAATAATGCTGCAACGGGCGTGAGCGGCCAGGCGATTGTGACACAAATTGTAGTAGCGCGCGACGGAAAAGATAAAAATATGACTAGTTTAGGCATGGGCATGAACGGCGGTCTGTTGGGCGTGCCCATGGGCTTTTTGGACTTTACACCGGAACCACCAGCACCATCGGCCACACCAGTCACCGTTACGGAACACGTCGAACTATCGTGCAACCCTAGCACCGATACACGCGATCTATCAAACCCTACCGAACCGCTCGACATAGACAATCATTTGGCTCAGCAAATCCATCGGCTCGATCAATCTCCAATGCATTCGATAGCGCATCATCATTCGACCGGCGATGAAAGCAACTCAAATTTAGTGCAGCATATTAAAAGCGAAATCAAGAATGAGCCGGGCATGATTATCACGCCAGAGATTGTCAATATGATGTCCACCGGACATATGGACATGTACAACTCGGATACGAGCGAGGACTCAATGATGATCGCCAACGGTTCGCCGCACGATCAGAATGAGCCGCATTATACGAATTTGGATCAGCAGCACGGTGGACTGGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATACCATCAACGACCTTATGGCAGCGTGCACATCGTTTGGGCATCGAAACGCCTAAGAAGGAGGGCGGCACTAAATCTTGGAACGAGGATGCCTTGCAGAATGCCTTGGAGGCACTGCGTTCGGGTCAAATATCGGCAAACAAAGCATCGAAAGCTTTTGGTATTCCCTCATCGACGCTCTACAAAATTGCGCGTCGCGAGGGCATACGTCTTGCGGCGCCATTCAATGCCGCACCAACCACGTGGACACCAGAGGACTTGGAGCGTGCTTTAGAGGCGATACGCGCTGGAAATACGTCAGTACAAAAAGCAAGTGCTGAATTCGGCATTCCGACAGGAACACTTTATGGACGCTGCAAACGGGAAGGTATCGAACTGTCGCGTTCAAATCCAACTCCTTGGTCCGAGGATGCAATGAACGAAGCATTGAACTCAGTGCGCGTCGGTCAAATGTCTATCAACCAGGCGGCCATTCACTACAACCTGCCATATAGCTCACTTTATGGACGCTTTAAACGTGGCAAGTACGATGTGGCGGCCAACACTAGTGGTGTTTCGCTTATTAACACCTCGGGTAATACGACCGGCAGCATTGAGATAATTGAGCATAGCCAGGAAAATTCGGTAGGTTACAGGGTTTCAAAATTGGAATTCTGTCAACATTTTTAA
- Protein Sequence
- MDNGLLRTAEQLKIKGLCEPAENADDLNDAASATITGQNQTSIVSLQQTADGNYIPIGSAGDDSDSDNKPQKICKTEQSVASPASNSSTSNNAATGVSGQAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVELSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHHSTGDESNSNLVQHIKSEIKNEPGMIITPEIVNMMSTGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGLGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVAANTSGVSLINTSGNTTGSIEIIEHSQENSVGYRVSKLEFCQHF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00530185;
- 90% Identity
- iTF_00598802;
- 80% Identity
- -