Basic Information

Insect: Scaptomyza hsui
Gene Symbol: -
Assembly: GCA_018152825.1
Location: JAECXO010000073.1:9919246-9922422[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 2.5e-05 0.0021 18.6 1.0 1 23 222 245 222 245 0.96

2 17 0.011 0.92 10.2 2.2 2 23 253 274 252 274 0.96

3 17 0.07 5.8 7.7 0.2 2 23 306 327 305 327 0.95

4 17 0.015 1.3 9.8 6.2 1 23 417 440 417 440 0.97

5 17 0.071 5.9 7.7 0.5 1 19 447 465 447 467 0.94

6 17 0.0067 0.55 10.9 4.0 1 23 477 499 477 499 0.95

7 17 2.7e-06 0.00022 21.6 0.9 1 23 506 529 506 529 0.97

8 17 8.3e-05 0.0069 16.9 1.2 2 23 537 558 536 558 0.96

9 17 0.003 0.25 12.0 0.2 2 21 585 604 584 605 0.94

10 17 0.0016 0.13 12.9 2.0 1 23 658 681 658 681 0.96

11 17 0.0055 0.46 11.2 0.5 2 23 719 741 718 741 0.95

12 17 0.00013 0.01 16.4 1.6 2 23 779 801 778 801 0.95

13 17 0.00079 0.065 13.8 0.3 1 23 815 837 815 837 0.95

14 17 0.0001 0.0085 16.6 1.2 1 23 843 865 843 865 0.99

15 17 3.3e-07 2.7e-05 24.5 2.6 1 23 871 893 871 893 0.98

16 17 1.5e-06 0.00012 22.4 2.2 1 23 899 921 899 921 0.98

17 17 0.0011 0.093 13.4 0.2 1 23 927 951 927 951 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	2.5e-05	0.0021	18.6	1.0	1	23	222	245	222	245	0.96
2	17	0.011	0.92	10.2	2.2	2	23	253	274	252	274	0.96
3	17	0.07	5.8	7.7	0.2	2	23	306	327	305	327	0.95
4	17	0.015	1.3	9.8	6.2	1	23	417	440	417	440	0.97
5	17	0.071	5.9	7.7	0.5	1	19	447	465	447	467	0.94
6	17	0.0067	0.55	10.9	4.0	1	23	477	499	477	499	0.95
7	17	2.7e-06	0.00022	21.6	0.9	1	23	506	529	506	529	0.97
8	17	8.3e-05	0.0069	16.9	1.2	2	23	537	558	536	558	0.96
9	17	0.003	0.25	12.0	0.2	2	21	585	604	584	605	0.94
10	17	0.0016	0.13	12.9	2.0	1	23	658	681	658	681	0.96
11	17	0.0055	0.46	11.2	0.5	2	23	719	741	718	741	0.95
12	17	0.00013	0.01	16.4	1.6	2	23	779	801	778	801	0.95
13	17	0.00079	0.065	13.8	0.3	1	23	815	837	815	837	0.95
14	17	0.0001	0.0085	16.6	1.2	1	23	843	865	843	865	0.99
15	17	3.3e-07	2.7e-05	24.5	2.6	1	23	871	893	871	893	0.98
16	17	1.5e-06	0.00012	22.4	2.2	1	23	899	921	899	921	0.98
17	17	0.0011	0.093	13.4	0.2	1	23	927	951	927	951	0.91

Sequence Information

Coding Sequence: ATGAAGCTACCTGTCATGTGTCGCACTTGCGATGCAAGGGAACCGGATAAACTGTATACGCTGGCAACGGCCACCAAAAGATTTCCGGAAAAACAGCTTTTAGACATTTTAGTCGAATTGACCCACATTGATGTAAATGAAACAGTGGCACAACAATTGCCGCAATGTTTGTGCGGCAATTGCGCTCGAAAATTGATCGGTGCCTACTACTATGTGCAGCAGGCGATGGCCGCCAATGAGCTGCTCATGCACCATGTGAAGCGTATGGACGGCGAAAAGCCCGGAGTAAACGATTGTCTGCGCGAGGCGCCCATGGAGATGTGCGCGGAACAGCATGTAGAGGTTAAATTGGAAACGGAGGAGGAGGACTTGGAAAATGATATTACCTGCACTGAACTTCCCGAGTTTACTACAGTACAAAATGCTGTTGATGTGGAACTGGACCTTATAGACGATCTGGAAAACAAAAAGTCTGCAGATCCGCTCAATATGTTCGATCCAGTTAAACAGGAAGAGGATGCTCTAACGAAAGCAACAAATGCGCAGTCACGAGAATTCAAGACTGACATTGATGAAGAAGACTCTCTGGATGATTTGCCATTGAAACAGCGCGTTAGAAAGTGGAAACATACAGCTAAAGTACGCGCAATAAAGCGAGCAATTTTCAAGTGCAAGGAATGCCCAAAGAATTTCAAGCGGGTCGAACTATTAAAACAGCATGCATCACGGGTGCACAAATCAAAAACTGACTGGTTGTCCTGCTCCTTCTGCATACGCAAGTTTAGTCATCGGGAAGCCCTGCAAATGCATCTCAAGGTGCATCGCGATTCTAAACGCTCGGCGAATCTGGGTGATAGCAAAAAGGCCAAGGATATCGATTTAAATGTGTGCAAGCCGCATGGATATAAGCTTATCGAGTGCATGATCTGTCAGACTCAATACGACAAGATTGTCGATTTGCGACGTCATCTAGAGCAGCATCCGGAGGCTGTTAACTTTGGTGCGCGCTCAAACTTGCAGCCCCACGAGCTGGCCGAGCTCTTCTATCCCGATGCCAAGGATGTTAGCGTGGATCAGTTGAAGGCGCTCATACGCAAGGATTTGGCAGCTGGCATCTATCAACGCTTTTACTCAATTACCAATCAATCCGGCTACGAAATGGATCTGGACAGCTCCGAAACAGAGAGCGAGGCTGAACTAGATGCCGACGAGCAGTCCAATCAACAGCGCCGCATACCCAAAGCCAGATACAGTTGCGAACTGTGCCACGAGCGCTGCCAGCGTAAATATCAGCTCTATGATCATCAGCGGCAGATGCACGCCTGGCTAGATGCGCCTCACGTCTGCGGTCGTTGCGATGCACGCTTTGTCAGTCTTCAGCTGCTGCGGCATCACAATGAGCTTCAGTGCAAGAATGCCCAAAAACGATTCCTGTGCCACAGGTGTCCGCTGCGCTTTCGCTGGCGACACAATCTAAAGGCACACATTCGCGAACATCGCATTACAAATCAAACCTTTGAGTGCAACGATTGCAAACGCGTCTTTGACAAGAAGAAATCGCTAACGGTGCACATGCTTAGCGTCCATGCAGAGGAATCAAAACTTATACCATGTCAATGGTGCACTCGCAAGTTCTATCGTCGTGACTATTTGGTGAAGCATCTGAAGCGTCATGGGATACGCGAGCAGGATATACCGCTGGCCGAGACGCTCATTGCAGCCACATCAAAGCCGAATGGCGCCAAACAGATAACCTGCAAGATTTGTAATCTTCACTTTGAACGCATCAACGATCTGCGCGTTCACATTCAGCTGGAACTGAAGCTGTCGCTGTCGTTGCACCAAAACTATGATTCACCCCACAACTACTCCATCACGAATGCATCTGGCTATGAACTGCAGCTGGGTGACTCCGAGACGGAGGATGAGTTGCATATGGAGCCCTCTGCCACGCCAAGCACACGCTCCGTCTACGTCTGCGAACTGTGTAAAGTGCAATGCAAACGCAAATTCGAGTTAATTCAGCATCAGCGTGCCATGCATCGTTTTGATAAGATGCCCTACGAGTGTGAAATGTGCATATTCAAGTGCGTCTGCAAGAGCATCATGGATCAGCATCGTCAAGCACAGTGTCATAGCACGGAGAAGAAACTGTCGTGTGGCAAATGCAGTTACAAATTCATGTGGCCCGAGAATCTGCAGCAACATATGCGGCTGCAACATGGCGCCGGCAACTCTGAGGGCGTTCCAGTTGATGCTGGTGAAGCCAGTGCTGATCGCATACCAGCCATACCCACTGATCCCGCAGCTCCAGGTGATGGTGTGCAGCTGCTGCAGTGTCCACACTGTGATCGAACATATCAGATGAAGTCGCGGCTCAACAATCACATACGGGACGTGCACATCAATGGAGATCGCAAGCGGAAGGAGGCCATCAAGAAGTTCCTGTGCTCGCTGTGCGGCCGGGAAACGCAATCGGCAGCCACCTTAGTCACCCACATGCGTCGTCACACCGGCGAGAAGCCCTTCAAGTGCGATCTGTGTGAAATGGCGTTCCCGCGGCACTCGGAAATGATATCGCATCGACGCATGCATACGGGGGAGAAACCCTTCCATTGCACTGTTTGTGGCAAGGATTTCGCACGCTCCGACAAGCTCAAGCGGCACATGCTCACACACAGTGGCTTGAAGCCATACAAGTGCACCTACTGTGACAAGAGCTATCGCCAGGCCAAGGATCTAAAGTTGCATCTGCAACAGCATACCGGCGAATGTACTTTTGTCTGCGGCACTTGTGGCGAACGCTTCATTCAGGGCACAGCGCTGGAGAAGCATCGCATGATGCGGCGTCACTTTGACGAGGTGGATGAACGTGCGACAAGCACAATAACCGCATAA
Protein Sequence: MKLPVMCRTCDAREPDKLYTLATATKRFPEKQLLDILVELTHIDVNETVAQQLPQCLCGNCARKLIGAYYYVQQAMAANELLMHHVKRMDGEKPGVNDCLREAPMEMCAEQHVEVKLETEEEDLENDITCTELPEFTTVQNAVDVELDLIDDLENKKSADPLNMFDPVKQEEDALTKATNAQSREFKTDIDEEDSLDDLPLKQRVRKWKHTAKVRAIKRAIFKCKECPKNFKRVELLKQHASRVHKSKTDWLSCSFCIRKFSHREALQMHLKVHRDSKRSANLGDSKKAKDIDLNVCKPHGYKLIECMICQTQYDKIVDLRRHLEQHPEAVNFGARSNLQPHELAELFYPDAKDVSVDQLKALIRKDLAAGIYQRFYSITNQSGYEMDLDSSETESEAELDADEQSNQQRRIPKARYSCELCHERCQRKYQLYDHQRQMHAWLDAPHVCGRCDARFVSLQLLRHHNELQCKNAQKRFLCHRCPLRFRWRHNLKAHIREHRITNQTFECNDCKRVFDKKKSLTVHMLSVHAEESKLIPCQWCTRKFYRRDYLVKHLKRHGIREQDIPLAETLIAATSKPNGAKQITCKICNLHFERINDLRVHIQLELKLSLSLHQNYDSPHNYSITNASGYELQLGDSETEDELHMEPSATPSTRSVYVCELCKVQCKRKFELIQHQRAMHRFDKMPYECEMCIFKCVCKSIMDQHRQAQCHSTEKKLSCGKCSYKFMWPENLQQHMRLQHGAGNSEGVPVDAGEASADRIPAIPTDPAAPGDGVQLLQCPHCDRTYQMKSRLNNHIRDVHINGDRKRKEAIKKFLCSLCGRETQSAATLVTHMRRHTGEKPFKCDLCEMAFPRHSEMISHRRMHTGEKPFHCTVCGKDFARSDKLKRHMLTHSGLKPYKCTYCDKSYRQAKDLKLHLQQHTGECTFVCGTCGERFIQGTALEKHRMMRRHFDEVDERATSTITA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00519319;
90% Identity: iTF_01322799;
80% Identity: -