Basic Information

Insect: Scaptomyza graminum
Gene Symbol: -
Assembly: GCA_018901835.1
Location: JAEIFL010000303.1:1035294-1038463[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 2.5e-05 0.0016 18.5 0.9 1 23 223 246 223 246 0.96

2 17 0.0095 0.62 10.4 2.2 2 23 254 275 253 275 0.96

3 17 0.024 1.6 9.2 0.3 2 23 307 328 306 328 0.96

4 17 0.015 0.97 9.8 6.2 1 23 421 444 421 444 0.97

5 17 0.11 7 7.1 0.3 1 19 451 469 451 471 0.95

6 17 0.018 1.2 9.6 4.9 1 23 481 503 481 503 0.95

7 17 2.7e-06 0.00017 21.6 0.9 1 23 510 533 510 533 0.97

8 17 8.2e-05 0.0053 16.9 1.2 2 23 541 562 540 562 0.96

9 17 0.0033 0.21 11.9 0.2 2 21 589 608 588 609 0.94

10 17 0.012 0.76 10.1 2.2 1 23 662 685 662 685 0.96

11 17 0.017 1.1 9.6 0.2 3 23 724 745 722 745 0.95

12 17 0.00018 0.011 15.9 1.0 2 23 778 800 777 800 0.94

13 17 0.00078 0.05 13.9 0.3 1 23 814 836 814 836 0.95

14 17 0.0001 0.0065 16.6 1.2 1 23 842 864 842 864 0.99

15 17 3.2e-07 2.1e-05 24.5 2.6 1 23 870 892 870 892 0.98

16 17 1.5e-06 9.6e-05 22.4 2.2 1 23 898 920 898 920 0.98

17 17 0.0011 0.072 13.4 0.2 1 23 926 950 926 950 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	2.5e-05	0.0016	18.5	0.9	1	23	223	246	223	246	0.96
2	17	0.0095	0.62	10.4	2.2	2	23	254	275	253	275	0.96
3	17	0.024	1.6	9.2	0.3	2	23	307	328	306	328	0.96
4	17	0.015	0.97	9.8	6.2	1	23	421	444	421	444	0.97
5	17	0.11	7	7.1	0.3	1	19	451	469	451	471	0.95
6	17	0.018	1.2	9.6	4.9	1	23	481	503	481	503	0.95
7	17	2.7e-06	0.00017	21.6	0.9	1	23	510	533	510	533	0.97
8	17	8.2e-05	0.0053	16.9	1.2	2	23	541	562	540	562	0.96
9	17	0.0033	0.21	11.9	0.2	2	21	589	608	588	609	0.94
10	17	0.012	0.76	10.1	2.2	1	23	662	685	662	685	0.96
11	17	0.017	1.1	9.6	0.2	3	23	724	745	722	745	0.95
12	17	0.00018	0.011	15.9	1.0	2	23	778	800	777	800	0.94
13	17	0.00078	0.05	13.9	0.3	1	23	814	836	814	836	0.95
14	17	0.0001	0.0065	16.6	1.2	1	23	842	864	842	864	0.99
15	17	3.2e-07	2.1e-05	24.5	2.6	1	23	870	892	870	892	0.98
16	17	1.5e-06	9.6e-05	22.4	2.2	1	23	898	920	898	920	0.98
17	17	0.0011	0.072	13.4	0.2	1	23	926	950	926	950	0.91

Sequence Information

Coding Sequence: ATGAAGCTGCCCGTTATGTGTCGCACTTGCGATGCGAGGGAAACAGATAAACTCTACAAACTGGCAACGGCCACCAAAAGATTTCCGGACAAAAAGCTTTCAGACATTTTAGTCGAATTGACCCATATTGATGTAAATGATGCATTGGGACAACAACTGCCTCAATGCCTGTGCAGCAACTGCGCTCGAAAACTAATTGGCGCCTATTACTTTGTCAAGCAGGCGCTGGCCGCCAATGAGCTGCTGGTGCACCATGTGGAACGCTTGGACGGCGACAAGCCGGGCAACAATGATTGCCTGCGCGAAGCTCCAATGGAGTTGTGTGCGGAACAGCATGTTGAGGTTAAATTGGAAACGGAGGAGGAGGACGTTGAAAATGATATAACATGCACGGAGCTGCCCGAGTTTACTACAGTACAAAATTCAATTGATATAGAGCTGGATCTTATAGATGATGTGGCAAACAAAAAATCCTCCTCCGATCCACTCAACATGTTTGATCCAGTTAAACAAGAAGAGGATGCTCCAACAAAAGCAACAAATGCGCAAGCATTCGAGTTAAAGGCTGACATTGATGAAGAAGACTCGCTGGATGATTTGCCATTGCAACAGCGCGTTAGGAAGTGGAAACAAATAGCAAAAGTACGCGCTATAAGGCGATCCGTCTTTAAGTGCAAGGAATGTCCAAAGAACTTCAAGCGGATCGAGCTGCTAAAACAGCATGCATCACGGGCTCACAAATCAAAAACGGATTGGGTGTCCTGCTCCTTCTGCATACGCAAATTTCGTCATCGGGATGCGCTACAGATGCATCTCAAGGTGCATCGCGACTCGAAGCGCTCAGCCAATCTTGGTGAGAGCAAGAAAGCCAAGGATATCGATATAAACGTGTGCAAACCACATGGCTACAAGCTCATCGAGTGCATGATCTGTCAGACGCAATACGATAAAATTGTGGATTTGCGTCGGCATCTAAAGCAGCATCCGGAGATTGTTAGTTTTGGTGGACGCTCGAATATGCAGCCGCACGAGCTGGCCGAGCTGTTCTATCCCGATGCCAAGGATGTCAGCGTCGAACAGCTAAAGGCGCTCATACGCAAAGATTTGTCAGCTGGCATCTATCAACGATTCTATTCAATTACGAATCAATCGGGCTACGAAATGGATCTGGATAGCTCAGAAACGGAGAGCGAGGCTGAATTGCTGGATGCCGACGAGCAGTCGAAACAACAACAGCAGCGCAGCATACCCAAAGCCAAATACAGTTGCGAGCTGTGCCACGAGCGATGCCAGCGTAAATATCAGCTCTACGATCATCAACGCCAGATGCACGCCTGGCTAGATGCGCCTCATGTTTGCGGTCGTTGCGATGCACGCTTTGTCAGCCTTCCCTTGCTGCGGCATCACAACGAACTCCAGTGCAAAAATGCCCAGAAACGTTTCCTGTGCCACAGATGTCCTTTGCGCTTTCGCTGGCGACACAATCTCAAATCTCACATACGCGAACATCGCATTACAAATCAAACCTTTGAGTGCAACGATTGCAAACGCGTCTTTGACAAAAAGAAATCGTTGACAGTCCATATGCTCAGCGTCCATGCGGAGGAATCGAAGCTTATACCATGTCAGTGGTGCACCCGCAAGTTCTATCGTCGGGACTATTTGGTCAAGCATTTGAAGCGCCATGGCATACGCGAGCAGGATATACCGCTGGCCGAGACGCTCATTGCAGCCACATCGAAGCCAAATGGCGCAAAGCGTATCACCTGTAAGATTTGTAATCTTCACTTTGAACGCATCCAAGATCTGCGCGTTCATATTCAGCTCGAGCTGAAGTTGTCGCTGTCGTTGCATCAGAACTATGATTCGCCGCACAATTACTCCATTACGAATGAGTCTGGCTACGAGATGCTGCTGGGCGACTCCGAGACGGAGGATGAGCTGCACATGGAGCCCTCTGCCACGCCCAGCACACGTTCCGTCTACGTCTGTGAACTGTGTAAAGTGCAATGCAAACGCAAATTCGAGATGATTCAACATCAGCGCGCCATGCATCGTTTCGACAAGATGCCCTACGAGTGTGAAATGTGCATATTCAAGTGTGTCTGCAAGAGTATCATGGATCAGCATTGGCAATCGCAGTGCCACAGCACGGAGAAGAAACTGGCGTGTGGCAAGTGCAGCTACAAATTTATGTGGCCCGAGAACCTGCAACAGCACATACGTCTGCAACACGGCACCGCTGTAGATCCAGGTGAAACTAGTGCCGATCGCATACCAGCCATACCACCCACTGATCCAGCAGCGCCTGGTGATGTTGTGCGGCTGCTACCGTGTCCACACTGCGATCGCACCTATCAGATGAAGTCGCGGCTCAACAATCACATACGGGACGTGCACATCAATGGGGATCGCAAGCGCAAGGAGGCAATCAAGAAGTTTCTGTGCTCGCTGTGCGGCCGGGAAACGCAATCCGCCGCCACCTTGGTCACCCACATGCGACGCCACACCGGCGAGAAGCCCTTCAAATGCGATCTGTGCGAAATGGCGTTTCCGCGGCACTCGGAAATGATATCGCATCGACGCATGCATACGGGCGAGAAACCTTTCCACTGCACCGTCTGTGGCAAGGATTTTGCACGCTCCGACAAGCTGAAGCGGCACATGCTCACGCACAGCGGCCTGAAGCCATACAAGTGCACCTACTGCGACAAGAGCTATCGTCAGGCCAAGGATCTGAAACTGCATCTGCAACAGCACACCGGCGAATGTACCTTCGTTTGTGGCACTTGCGGCGAACGCTTCATTCAGGGCACAGCCCTGGAGAAGCATCGCATGATGCGGCGTCACTTCGACGAGGTCGATGAGCGTGCGACAAACACAATAAGTGCATAA
Protein Sequence: MKLPVMCRTCDARETDKLYKLATATKRFPDKKLSDILVELTHIDVNDALGQQLPQCLCSNCARKLIGAYYFVKQALAANELLVHHVERLDGDKPGNNDCLREAPMELCAEQHVEVKLETEEEDVENDITCTELPEFTTVQNSIDIELDLIDDVANKKSSSDPLNMFDPVKQEEDAPTKATNAQAFELKADIDEEDSLDDLPLQQRVRKWKQIAKVRAIRRSVFKCKECPKNFKRIELLKQHASRAHKSKTDWVSCSFCIRKFRHRDALQMHLKVHRDSKRSANLGESKKAKDIDINVCKPHGYKLIECMICQTQYDKIVDLRRHLKQHPEIVSFGGRSNMQPHELAELFYPDAKDVSVEQLKALIRKDLSAGIYQRFYSITNQSGYEMDLDSSETESEAELLDADEQSKQQQQRSIPKAKYSCELCHERCQRKYQLYDHQRQMHAWLDAPHVCGRCDARFVSLPLLRHHNELQCKNAQKRFLCHRCPLRFRWRHNLKSHIREHRITNQTFECNDCKRVFDKKKSLTVHMLSVHAEESKLIPCQWCTRKFYRRDYLVKHLKRHGIREQDIPLAETLIAATSKPNGAKRITCKICNLHFERIQDLRVHIQLELKLSLSLHQNYDSPHNYSITNESGYEMLLGDSETEDELHMEPSATPSTRSVYVCELCKVQCKRKFEMIQHQRAMHRFDKMPYECEMCIFKCVCKSIMDQHWQSQCHSTEKKLACGKCSYKFMWPENLQQHIRLQHGTAVDPGETSADRIPAIPPTDPAAPGDVVRLLPCPHCDRTYQMKSRLNNHIRDVHINGDRKRKEAIKKFLCSLCGRETQSAATLVTHMRRHTGEKPFKCDLCEMAFPRHSEMISHRRMHTGEKPFHCTVCGKDFARSDKLKRHMLTHSGLKPYKCTYCDKSYRQAKDLKLHLQQHTGECTFVCGTCGERFIQGTALEKHRMMRRHFDEVDERATNTISA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00519319;
90% Identity: iTF_01322075; iTF_01324292; iTF_01327302; iTF_01326584; iTF_01323522; iTF_01320603;
80% Identity: -