Sfla005330.1
Basic Information
- Insect
- Scaptomyza flava
- Gene Symbol
- rfx7.L
- Assembly
- GCA_003952975.1
- Location
- RKRM01000031.1:238639-245498[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.4e-32 2e-28 98.7 0.1 3 78 322 397 320 398 0.97
Sequence Information
- Coding Sequence
- ATGTCCGAGAAGCATGGCCAGCTCAGTAGTGCGCAGTGGTCGAcgaaatcagcagcaggagcagcggcggcagcagcaccagccGTGGGTGGCACATTAACCACATCGCTGCGGAAGCATCCGCAACAAACCAATCTAATTTCTAATTCCATATAcgaatcaacagcaacagttgcacaCACAAATCCGTATGGCATTTGTGGTGTTCCCCTACCGGTATCGGTTCAGATTCCGGACATTCCCTCCTATACATCAGGACGTTTCCAGACACCGCCGGTGCATATGCAAACGGCCAAGTCCTCGCCGCTGACCATTGCACCAGTTGTGGTGCCTGGCCAGCAATTCACCCAGTCCCAGGTGTCGCCCACACCCACTAATGTACCTGCTCCCAGTCAAAGCGGCTTTTTGTCGCCAGCTATTACAAACCTGAATACCCCTGGCACTGCAGCCAGTGGAGTAACTTCCGTGCTCACACCGAATCCCTTTGCAGCGGCCGCTGGCAATGCTGGCCTGGCATTTGTCAATGCCTTCAAAAGCGCTCAGCAATTGGAGATAGGAAAGATAATGCAAGCGATGTCTGGGAATGTATCTGCGGCGCCTGCAGCACCGTTGCCGAGACATACACATCCTCCACCACCACATCCAGCCCATTCTCATTCCAGTGAAGGCAGTTCAGTTGCTGCGGCCGCTGCAGCACCTAGTGGCTCTATCAACTCCGCAATTGTGGAGAATGTGACCAGTGCGTTAACCAGTGATGATGAGCGAATGCGACGCGTTTTGCAGGTCATCGAGTCCAGTTTGGAtgaCAGTGCCAAGCTACAAATTGCGCAGATTCTGGAAAATGTGGCGGGCTTGAAGCCAATTGAAAAACTGTTTCTCTACCTGCGATTGCCTGGTGAAAGTGCGGACACAGATCCGCTGAGACAACCGCAAAATCCGTTAGGAACACGCTCTGAGATTAATCACACCATCAATTGGGTGCGCTCACATCTTGAGCACGATGCACAAGTCTCCATACCAAAACAGGACGTTTACAATGATTACATcatttattgCGAACGCCTTAGCATCAAGCCACTTTCAACAGCGGACTTTGGCAAGGTCATGAAGCAAGTGTTTCCCGGCGTCCGTCCGCGACGTTTGGGTACGCGCGGAAATTCTCGCTATTGTTATGCGGCCATGCGAAAGACCACGAAACTGACACCGCCACAGTTGCCTCAGCTGTGCAAGGATGAGCCAATCGATGACACTTTACCAAATGAAATTGCAGCACCGGTAACGCACTCACCCAGCGCAGTGGGCAGCGCTCAAGGTACAGATAACGATGGTAGCTGGGATGTGGTGCGAGCTTGGGCGGAAAAGCTGTTAAGCACCAAAGTGGAGAGCGTCGCTGAGTTGGCTACGCGCATCAAGAGCAATAATGCAACTATTAATGCAGGATTGGCGCCCAAGAAATATACGCCTCGGGAGCCAAAAGAGAAGCGTTTACTTGCAGATATGGGACCACTTAAGAAGCGGCGCAAAAAGAAACGCAAGGGCTCCACATCATCCGAATCGAGCTGCAATCAGCCAAATGCTGCTAACGATGCTGGCAGCAGTCAGGAAGCGGTCAGCGATGATCACAAGACGGAGCAGTTACTAAAGATCAAGCAGGAGATTATAGACTCACCCAACAGCTATTTAACAGCCCAACAGcttcagcagcaacagcatcagcaggtTTTGCCCATGAATCTGGCTACAGAAGCACGCAGCAATGCTGTTCGCAATCTAACGCCGAAGCTAATGGAACTGCAGACGGATGCTGCGGTACAGCAGCCGATGTCCCCGTCTGGACTAGTCATCAAGGACGAGGCGGAAGACTATAACACGACCAACATTTTTTGCAAGAAGGTGCTAAAGGCGCAACAGACCAAAGGCTTCTGGGCGAACTCGCCCAGTAGCAGCAGTGGCGCCAGCGGTGGTGGCACCATGCTAATACCCCCAGTGATAACCACAACGGCAGCCACACCACCGCCGCCAGCTCAGCCACCACCCGAAAGCTCGCCCGTAAATGTCACAGCGCTATCGATGGGCCCGCCTGCACAGTTGAATAATCCCAGCTCCATAAGTCCATCAAGCAGTCTGGACACAAACAGCACCATCCCAAAGGTCGCTTCGCGCAACATGATGTTGATGCGGACGAGACGTTTAATAGCCGAAAATGCGGCAGCATTGGCCGCCGCTGAGGACTCCGGACTGCCTGAGAACTTGGGATTGCCGCGCGAGCGCGTCATTAGCATATGCAATATGGATAAGCATGAGCTGGATGATTATTTTTTGCCCGGCGACGATGAGGAAGAGAACTCCGAGGGGCAGGATACCGAGTTGCTTCAATATTTTCAGATGGGAGACGCTGAGGAAAAACAACTGAATTCCTTAGATGCTCATGCAGAACAACACAGAAATCCACAGGCAGCGTCAGCTAGTGCACTAAACAATGCAATGGCAATGACAACTGCTAGAtcagcaatggcaatggcaacagcaacaacagcaccgatgttgcaacagcaacatcatcagcagcagcaacaacaacaacagcagttgcagctgcaacagatGCGTCGCTCAATGCCATTGccgaaagcagcagcaacaacggcagcgacagcagctgcaaatgcTGTGGGTTCTGCCTCAGCGTCTCTGGCTTTAATGTCACGaaagcatcaacaacaacagcaacaacatcagctgcaacaacaacaccaacaacagcagcaccagctgcgacccaacagcaacaataacagcaacaaacgcaAAATAAGCCTAAGCAACGCGTccagcaatggcaacaacaagaactgcATTTTCCTGCCCATTTCCCCAAACaccaatagcaacagcaacatagcAGCATCAttagcagcaactgcaacaccaacaacagtcGCTAAAACAACtacagcggcaacaacaacaacaactgaaaagCTGCCAGCTCAGAATTGCTTTGCTAGTCCTGGACTCACACGCATGCGACAACGCTCCAGTCTTCTAACCAAACAGCAATCGCTAGACTTTGACGACAAGAATGGCAATGGTGATCCAATGATTGGTGCTCATAGGCGCAGGCGCAGCTATGTTTACAGTTATCCCAGCAGTAGCTCCGCCTCGGCACCGCCCAGTCCATCGCTGTTGCAGCAGTGTATGGGCGTCAATTGGTCGTTTAGCGGCAATGCGGCCAACAGCAATCAATTCAGcgacagcaccaacaacagcaataatgtAGAGCTGCTCATCAATCAAAATTCAATGGATTTGGAAACAAGTTTGGCCCTAAGCGGTGCCAATATGGAGCTTAACGAAACTCAGCGCTCGCAATCGGTGCCGCTGTCTCAATTACAAcgtggcagcagcaaccactCACCCTCAACAAGCTTCAATCGCCAGCTAAGTCAGGCGGCTGTCAATGATGCGTTCTTCTCCGAGAACAGCAACAGTCAGCAGTCGGTAAGTGCACTAAAGCTGAGCGGCAATGATGTAGATGTACCGGCAAGTCTGCTTTATGACGATGTGGACGTCAGTGCGCTTATCTCGCCCAGCTTTGCCAACAAGTTTTGTGGCATACAAACGACAACCACATGCAGCTCATCGGCGGGCTCATCGAGCGGCTACAGCAGCGCTGGCAGTGCCGGTGGCATTGTATCGCGTTCGGTGCCCTCCACACCGTTGCCGCATCAGCAGTCGCAGCTGCAGGGCTGCAACAGTAGCCAGAACACTACCAATGGCAACTGCAACACCACCAACGGGCTATTCAACATCTCACCTGCCTTCAACTGGGGCGGCAACATTGTGGGCTACAGTGGTCAATCGTATGCTTCACGCTCAGCTCTCGATATATCCAAATCTATGCCAACGACACCAATAACGACTCCGTGCTTTCGCTACAGTCCCGTTGAGCTGCATCGCGACTTTCTGATCAATGGCAATACGATAGATAGTCTGCCCTCGCCAGCTGTGGTGTCCTTTGGAGTGGGCAGTAGCACTGACGCCGACTTGGCATTGAGCAGCGATGCACTGATTGACGCCGTTGCCCATGTGGAGGCCATTATTGATGCCGCCAATATACTCGATAGCTTGTAG
- Protein Sequence
- MSEKHGQLSSAQWSTKSAAGAAAAAAPAVGGTLTTSLRKHPQQTNLISNSIYESTATVAHTNPYGICGVPLPVSVQIPDIPSYTSGRFQTPPVHMQTAKSSPLTIAPVVVPGQQFTQSQVSPTPTNVPAPSQSGFLSPAITNLNTPGTAASGVTSVLTPNPFAAAAGNAGLAFVNAFKSAQQLEIGKIMQAMSGNVSAAPAAPLPRHTHPPPPHPAHSHSSEGSSVAAAAAAPSGSINSAIVENVTSALTSDDERMRRVLQVIESSLDDSAKLQIAQILENVAGLKPIEKLFLYLRLPGESADTDPLRQPQNPLGTRSEINHTINWVRSHLEHDAQVSIPKQDVYNDYIIYCERLSIKPLSTADFGKVMKQVFPGVRPRRLGTRGNSRYCYAAMRKTTKLTPPQLPQLCKDEPIDDTLPNEIAAPVTHSPSAVGSAQGTDNDGSWDVVRAWAEKLLSTKVESVAELATRIKSNNATINAGLAPKKYTPREPKEKRLLADMGPLKKRRKKKRKGSTSSESSCNQPNAANDAGSSQEAVSDDHKTEQLLKIKQEIIDSPNSYLTAQQLQQQQHQQVLPMNLATEARSNAVRNLTPKLMELQTDAAVQQPMSPSGLVIKDEAEDYNTTNIFCKKVLKAQQTKGFWANSPSSSSGASGGGTMLIPPVITTTAATPPPPAQPPPESSPVNVTALSMGPPAQLNNPSSISPSSSLDTNSTIPKVASRNMMLMRTRRLIAENAAALAAAEDSGLPENLGLPRERVISICNMDKHELDDYFLPGDDEEENSEGQDTELLQYFQMGDAEEKQLNSLDAHAEQHRNPQAASASALNNAMAMTTARSAMAMATATTAPMLQQQHHQQQQQQQQQLQLQQMRRSMPLPKAAATTAATAAANAVGSASASLALMSRKHQQQQQQHQLQQQHQQQQHQLRPNSNNNSNKRKISLSNASSNGNNKNCIFLPISPNTNSNSNIAASLAATATPTTVAKTTTAATTTTTEKLPAQNCFASPGLTRMRQRSSLLTKQQSLDFDDKNGNGDPMIGAHRRRRSYVYSYPSSSSASAPPSPSLLQQCMGVNWSFSGNAANSNQFSDSTNNSNNVELLINQNSMDLETSLALSGANMELNETQRSQSVPLSQLQRGSSNHSPSTSFNRQLSQAAVNDAFFSENSNSQQSVSALKLSGNDVDVPASLLYDDVDVSALISPSFANKFCGIQTTTTCSSSAGSSSGYSSAGSAGGIVSRSVPSTPLPHQQSQLQGCNSSQNTTNGNCNTTNGLFNISPAFNWGGNIVGYSGQSYASRSALDISKSMPTTPITTPCFRYSPVELHRDFLINGNTIDSLPSPAVVSFGVGSSTDADLALSSDALIDAVAHVEAIIDAANILDSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01326135; iTF_00494851; iTF_00548545; iTF_00521090; iTF_00566530; iTF_00592834; iTF_00497124; iTF_00527786; iTF_00597099; iTF_00496333; iTF_00521902; iTF_00481972; iTF_00609620; iTF_00558398; iTF_00573786; iTF_00619582; iTF_00524863; iTF_00559967; iTF_00499331; iTF_00485603; iTF_00576808; iTF_00518186; iTF_00595693; iTF_00511013; iTF_00497891; iTF_00542180; iTF_00615941; iTF_00501546; iTF_00564394; iTF_00535055; iTF_00582703; iTF_00498609; iTF_00513201; iTF_00576087; iTF_00543483; iTF_00570140; iTF_00516734; iTF_01327630; iTF_01320934; iTF_01320214; iTF_00552047; iTF_00500045; iTF_00537973; iTF_01326907; iTF_01325405; iTF_00508062;
- 90% Identity
- iTF_01326135;
- 80% Identity
- -