Basic Information

Gene Symbol
nfxl1
Assembly
GCA_905146935.1
Location
LR989929.1:60529647-60532914[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 2 3.2e+04 -8.1 6.4 15 19 168 172 167 172 0.82
2 19 0.51 8.2e+03 -2.2 0.7 4 10 203 209 203 209 0.92
3 19 1e-08 0.00017 22.4 14.5 1 18 217 233 217 234 0.98
4 19 0.61 9.8e+03 -2.5 2.1 5 10 259 264 259 264 0.95
5 19 8.5e-07 0.014 16.3 13.6 1 19 270 289 270 289 0.93
6 19 0.89 1.4e+04 -3.0 0.8 6 10 314 318 313 318 0.91
7 19 2.1e-09 3.5e-05 24.6 12.5 1 19 324 342 324 342 0.99
8 19 0.52 8.4e+03 -2.2 1.4 5 10 366 371 366 371 0.95
9 19 3.6e-08 0.00058 20.6 10.0 1 18 377 394 377 395 0.96
10 19 0.31 5e+03 -1.5 0.4 1 5 404 408 404 413 0.75
11 19 2.3e-05 0.37 11.7 15.3 1 18 429 446 429 447 0.98
12 19 2.9e-08 0.00046 21.0 12.6 3 19 458 474 450 474 0.85
13 19 1.1 1.7e+04 -3.2 0.6 5 10 501 506 501 506 0.78
14 19 0.00093 15 6.5 11.3 8 18 518 528 510 529 0.86
15 19 0.33 5.4e+03 -1.6 5.1 3 11 542 550 532 551 0.84
16 19 0.33 5.3e+03 -1.6 0.9 6 10 609 613 608 613 0.90
17 19 1.7e-05 0.28 12.1 5.8 1 11 619 629 619 630 0.96
18 19 0.00012 1.9 9.4 14.2 3 18 659 674 658 675 0.94
19 19 1.8e-06 0.029 15.2 13.3 1 17 726 744 726 746 0.86

Sequence Information

Coding Sequence
ATGGCTTCTAACATTTCCAAAGCAAACAAACCAAAAAATGCACCTTCCAGCACAACCAACAAAAAACCAGAAAATTCCAATAAATCCCAACAATCGAAAAAATTCAAAGAAATACAAAATAAGAACATGGAAATGGCCAAGAAAATCACAGAAAACTATGAGTCCAGTTCTGACGAAGAAGAACTGGATGGTGGTAAAATCTTGGAAAAATTGTACAAAAACTACACAGGTGGAAATGATCAACTGCAAAAAACTGCAGCTTTTCTAGAAAACGTTTTGCAATCGGGGTCTGCAATATGCCTCATTTGCATTGGATCGGTTAAGAGGATGGATGCAATTTGGTCTTGCAAGTATTGCTACTGTGTGTTCCATTTGACGTGTGTTAAGCGATGGGCAAACGACAGTATCGCGTTGCTAAAAGATAAAGGCACCGAAGATCAAGGATATTACAATAATCTGGGTGAATTCATTCCTAAAAAGATTAAAGCTGTAAAGTGGTGTTGTCCGCAATGTCGACGGGACTATCAACCTCAAGAGAGACCAACTCAATATGAGTGCTTTTGTGGCAAAGAAGTCAACCCCGTCAATCAGGAATGGATAGTACCCCATTCGTGTGGAGAGTCTTGTGAAAAACCACTGCAACCTGAATGTGGGCACAAGTGTATGCTTCTCTGTCATCCTGGTCCCTGTCCTCCCTGTGCTCAGAGTATATTTTCAAGTTGCAAATGCGGAAAATCTCCACCGAAAACACTTCGTTGTTTCCAAAAGACTTGGACATGCGAAAGAAAATGCCTGCAGGTTCTTCCTTGTGGCGAACACAAATGTGAACAAGTTTGCCATTCGGCTAAACAATGCCCGCCATGTAGTAAGTCGAGTCGTCAAAAATGTGTTTGTGGCAATGAAGAAGCCACCAAAAACTGCTCGCAAAGAATTTGGCATTGCAAGAAGGTGTGTAACAAAAAATACAGATGTGGTATTCATAGTTGCAAACAGGTTTGCCATGATGGGGCATGCGGTGATTGTCCGCTTAGCCTTCCAAGATCCTGTCCATGTGGAAAAACTAGAAAAACAGCGCCTTGTAATGAATCAATCGATACCTGCGAAGACACTTGTTTGAAGTTGCTCTCGTGTGGAAAACATTATTGCACGCAACGTTGCCATAAAGGCGATTGCAGCTTGTGTTTAATTGTTACAAAAAAGAAATGTCGCTGTGGTATGCATGAAAAGGAATTACCATGTTGGAAGTCATTCAGCTGTGAGACAAAATGCAAGAAAATTCGAGACTGTGGGAAGCATGCTTGCAACAAAAAGTGCTGCGATGATCAATGTCCACCATGTGACAAGGTTTGCGGAAAATTGCTGTCTTGCAAAAAGCACAAGTGCGCTTCAGTTTGTCACGATGGTCCGTGCTATCCTTGTAAATTGCAGTCCCAAGTTAAATGTCGTTGTGGAAGTACTTGTATAACGGTTCCCTGTGGCAGAGAACGTAGAGCTCGACCCAATTGTATGGAACCCTGCAGAATTCCCTCCAAATGCCATCATCAAAATAAACACAAATGTCACAAGGGCGATTGTCCATCATGCAATCAAGTGTGTGGATTAAAAAATGCCACCACTAATTGTGAACACTTGTGTACAGCCCGATGTCATGCCGCTGTAAAGATTCCCCTAAAGAATAATCCGAACAATATATTTGAATATAAGTTCGATAATTATGAAATCAAACAAATGCCTCATCCAAAATGTGAAAAGAAGGTAATGGTTCCATGCATAGGTGGCCACGAGATTGCAGAATGGCCATGTTGGAATTCTAAGCCAAGTTCATGTCAACGTCTTTGTGGTCGCACATTGAAATGTGGCAATCATAATTGCTCTCTAGTTTGTCACAACGTAGCTAATCCCGATGATAAAAATCAACAGGAGGGCTGTGGACAATGCCTAGAAGGATGCGAAATTAAACGGCCCCCAGGGTGTATTCATCGTTGTAAGAAATCTTGTCATCCACCTCCATGTGACCCGTGCCTTGCGCAAATTAAAACAAACTGTCATTGTGGACTGACGCAGGTTTATTACAAATGTTCAGAATACAACTCAATAGAAGGTGTAACTCAGGACATTGAGGAACGCCAGGAAAAATTAAAGAGTTGCGGAAATCGTTGCATCAAAAACTACTCCTGTGGCCACCGATGTTCGGCTGAGTGTCATTCAGGACCCTGTCCAAATCCGCAAAACTGTCGTAAAAAGGTGAAAATCTACTGCGAATGCAAGCGCATTAAAATGGAAGTCTCTTGTGAAAAGTCTCGATCCAAGGATACAATCATACCTTGCGATGATGTGTGTCAAGCCATCAAAACTCAAACTGAAAAAATCAAACACGAAGAAGCTGAAAAACAAAGACTTGCCGAACAGGAACGAAACCGCATCGAATTGGAACAATTTGAAAAGAGATTTGGCAAACGAAAACCAAAGGGACGTAAAGTTGTCGCACAGGAAGTCAAAACAAACAACAATCAAATGAAATTGCTGATTGGAACTGCAGCAGCTGTTGTCGTAGTTGCAGTGATTTTTTTTTATTTTTATTTATAA
Protein Sequence
MASNISKANKPKNAPSSTTNKKPENSNKSQQSKKFKEIQNKNMEMAKKITENYESSSDEEELDGGKILEKLYKNYTGGNDQLQKTAAFLENVLQSGSAICLICIGSVKRMDAIWSCKYCYCVFHLTCVKRWANDSIALLKDKGTEDQGYYNNLGEFIPKKIKAVKWCCPQCRRDYQPQERPTQYECFCGKEVNPVNQEWIVPHSCGESCEKPLQPECGHKCMLLCHPGPCPPCAQSIFSSCKCGKSPPKTLRCFQKTWTCERKCLQVLPCGEHKCEQVCHSAKQCPPCSKSSRQKCVCGNEEATKNCSQRIWHCKKVCNKKYRCGIHSCKQVCHDGACGDCPLSLPRSCPCGKTRKTAPCNESIDTCEDTCLKLLSCGKHYCTQRCHKGDCSLCLIVTKKKCRCGMHEKELPCWKSFSCETKCKKIRDCGKHACNKKCCDDQCPPCDKVCGKLLSCKKHKCASVCHDGPCYPCKLQSQVKCRCGSTCITVPCGRERRARPNCMEPCRIPSKCHHQNKHKCHKGDCPSCNQVCGLKNATTNCEHLCTARCHAAVKIPLKNNPNNIFEYKFDNYEIKQMPHPKCEKKVMVPCIGGHEIAEWPCWNSKPSSCQRLCGRTLKCGNHNCSLVCHNVANPDDKNQQEGCGQCLEGCEIKRPPGCIHRCKKSCHPPPCDPCLAQIKTNCHCGLTQVYYKCSEYNSIEGVTQDIEERQEKLKSCGNRCIKNYSCGHRCSAECHSGPCPNPQNCRKKVKIYCECKRIKMEVSCEKSRSKDTIIPCDDVCQAIKTQTEKIKHEEAEKQRLAEQERNRIELEQFEKRFGKRKPKGRKVVAQEVKTNNNQMKLLIGTAAAVVVVAVIFFYFYL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01223893;
90% Identity
iTF_00694276;
80% Identity
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