Spav014721.1
Basic Information
- Insect
- Saturnia pavonia
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_947532125.1
- Location
- OX383899.1:2092611-2110554[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.5e-78 9.9e-74 248.6 19.5 1 296 121 403 121 406 0.87 2 2 1 2.2e+04 -6.9 16.5 1 48 403 449 403 477 0.66
Sequence Information
- Coding Sequence
- ATGGGGCATCGATCCGAATTGGCCACGCCTGACAATAGTGAGGATGAGAGTGGTGATGCGTTTACCGACGGAGATTTTGGCGACTCTGAAGATGAAACTCTTATTGAGCGAAACGATGCCTCTAAATCCCATTTACCCGTTAATGAAACTGTTAATAATGAGGTACAGAAAACTATCGATGATTTAGACAATACTGAAAATTTTAATCCTGAAAAATCAGCAATTAACGGACAGACAGATGGTGAAAACCTATTAAGCGAATTGGAGACCCAATGCCAAGCGGTATCAGATATCAGGAGAGATTCTTTCAGTGAACAGACTCCTTCGATAGTGGGAATCCTCGGAGACCAACAAAACCATGCGGAACAGCGACTGGCGGCGCGACGAGCGGCACGGGCGGAGGCGCGGGAGATCCGCATGCGTGAGCTGGAGCGTCAGCAGCGCGAGCAGGAGGATCATGCCGACAAGGCATATGACATGTATGCAGAGACGGTGGGACGGCGTGCCGGTGGGCGACTGGTGGCCCTCAGTCCGGGCGTAGTGCACTCCCCTCGGCGCAGTTCCGAAGACTCCACGGATGATGGGTTCAGTATTAAAGATCTCAGGCACGAGCTGAAGGAAGTCGAGGAGAAGTTCCGCAAGGCGATGATACTAAACGCTCAGCTGGACAACGACAAAGCGGCGCTAGGCTACCAGCTCGAACTGCTGAAGGACAGGATAGAGGAGCTGCACGAGGAGTACGCGCAATTACAGCGCGAGCATAAAGAGAAATGTTCTGCACACGAGCGGTTAAAGCGCGAGCACGGGTCCCTCGAGCGGGAGGTGGAGGGGGCGCGGGCCGCGGTCGTGGCGCGCGAGGCGGCCGCCGCCGCCGCCGGGTTCGCCTTCGTCGAGGCGGGCACTGCGGGGGCGGAGCACCCCGGCGAGGGGTGCGGCCCAGTGCCCGCGTTAGCGCTCGTCTCGCACCAAGCACAGGCGCTGCTCAATGACGCCGGTGAAGGCACGCTTGATGTCCGGTTGCAAAACCTCGTGAGCTCGAAGCAAGCGCTCGAGTCCGAAGTACGTAAGCTGAAGCTGCAGCTGAACGAGGAGCGCGCCGCCCGCCAGAACGGTGTCGCCACTCACAACGACCAAGAGTATGAAAACGAACTAGAGACGCTGCGTAAAGCGGTCGCGGAGGCGAAGGGTCGCGCGGCGCGGGCGGAGTCCGAGGCGGCGCTGCAGGCCGCGGCGCTCGCCCGCCTCGAGGCGCAGGTGACGCGGCTGCGCGCGCGACAGGACCACCAGGACGAACACGAGGAACAGCTCAAACAGGAGCGCCGCCGTCTGCAGAGAGAGGCGAGAGAAGCTCTGAATCGAGTCGAAGAGCTGGAGACGGAGAACAGCCACCTCACGAAACGTCTCGACAAGCTCAAGAACGCGAAGTCTGCGCTCCTCAAGGACCTGTGA
- Protein Sequence
- MGHRSELATPDNSEDESGDAFTDGDFGDSEDETLIERNDASKSHLPVNETVNNEVQKTIDDLDNTENFNPEKSAINGQTDGENLLSELETQCQAVSDIRRDSFSEQTPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRAGGRLVALSPGVVHSPRRSSEDSTDDGFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSAHERLKREHGSLEREVEGARAAVVAREAAAAAAGFAFVEAGTAGAEHPGEGCGPVPALALVSHQAQALLNDAGEGTLDVRLQNLVSSKQALESEVRKLKLQLNEERAARQNGVATHNDQEYENELETLRKAVAEAKGRAARAESEAALQAAALARLEAQVTRLRARQDHQDEHEEQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00820103;
- 90% Identity
- -
- 80% Identity
- -