Sjap017295.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Saturnia japonica
Gene Symbol
-
Assembly
GCA_033032175.1
Location
CM065316.1:9493368-9517432[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0001 0.011 17.3 0.1 3 23 132 152 131 152 0.97
2 16 9.3e-07 0.0001 23.7 1.2 1 23 158 180 158 180 0.99
3 16 5.8e-06 0.00063 21.2 2.7 1 23 186 208 186 208 0.99
4 16 3.8e-06 0.00042 21.8 2.6 1 23 240 262 240 262 0.98
5 16 3.7e-07 4e-05 25.0 1.5 1 23 277 299 277 299 0.99
6 16 0.00016 0.018 16.7 2.8 1 23 305 327 305 327 0.98
7 16 1.2e-05 0.0013 20.3 2.1 1 23 333 355 333 355 0.99
8 16 0.037 4.1 9.3 1.8 1 23 362 384 362 384 0.98
9 16 6.3e-07 6.8e-05 24.3 2.3 1 23 390 412 390 412 0.99
10 16 0.043 4.7 9.1 1.8 1 23 419 441 419 441 0.98
11 16 2.6e-06 0.00028 22.4 1.5 1 23 447 469 447 469 0.99
12 16 0.0039 0.43 12.3 0.8 1 23 476 498 476 498 0.99
13 16 5.3e-06 0.00058 21.4 1.4 1 23 504 526 504 526 0.98
14 16 0.0021 0.23 13.2 0.3 1 20 532 551 532 554 0.93
15 16 4e-05 0.0044 18.6 1.4 2 23 561 582 560 582 0.96
16 16 3.1e-06 0.00034 22.1 1.3 1 23 588 611 588 611 0.97

Sequence Information

Coding Sequence
ATGTTCGAACAGCAGATCAAGGCTGAGCCCATGAGCTTCTACACATCCCATCCACACATTCACTCTGGTCCTCCAACAATAGTCCGTTCAGACTCCAATCAAGGAATCATCAATATGCACCACCAGCATCACCAGGAGGACTCGAAAGACAGCCTTATACAACAACAAGTACAACACCAACAGGATCTCATGGAACAACACCAACATCAACAACAAGAAATGCATCAACAAGATGATGAGctcAGCTTCAAAGGAATTGACGACGAAGGTGTCGAATTAGAAATGGACAGTCGCCATTGTTCTCAGGGTATGGGTGTTGACATGGGATCAGTTCAGACTAAAATGGAAGTATCAAACGGCGGCCAACCTACAACACGTTCAAAGCCTCAAGCCTGTAAGgTCTGTGGTAAAGTATTATCGTCCGCTTCATCCTATTATGTTCACATGAAACTTCATTCCGGAAATAAGCCCTTCCAGTGTacgGTATGTGATGCGGCCTTTTGCCGCAAACCGTACTTGGAGGTACACATGCGCACGCACACAGGGGAACGCCCTTTCCAATGCGATCTATGCCTGAAACGTTTCACACAAAAATCCAGCCTTAATACGCACAAACGCGTTCACACAGAGCAGAGAGTAATAGACAGTGTGTTGTTTGTTGGAATGGCCTGGGTTCTAGATGAGCACATGCGCGCGTTGTTGGTGAAGGACCGGCCCTACAAGTGTGAGCTCTGTCAGATGCGGTTCACGCAGAGCTCCAGCCTCAATCGACACAAGAAAATACACACGGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCATATCAGTGCGACATCTGTGACAAGCGGTTCACTCAGAAGTCCAGCCTTGGCACTCATAAACGTATACACACCGGGGAGCGCCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAAATACATACGGGCGAGCGGCCCTATCAGTGCGACGCGTGTCTGAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAAGAGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGTCCCGCTGCCTTCACCTGCAAGCAATACTTGGAGATTCACACGCGCACCCACACCGGCGAGCGGCCGTATCAGTGCGACATCTGCTTGAAGCGCTTCACGCAGAAGTCCAGTCTCAACATACACAAGCGGACACATTCAGTGCAGGGCCGCCCGTTCCAGTGTCTGCAGTGTCCCGCCGCCTTCACCTGCAAGCAGTACCTCGAGATACACAACCGCACGCACACTGGCGAGCGCCCCTACCAGTGTGACGTGTGCCTCAAGAGATTCGCGCAAAAATCAACACTCAATATACACAAAAGAACGCACACAGTGCAAGGTCGCCCGTACCAATGTATGGAGTGTCCAGCGGCGTTCACATGCAAGCCGTACCTGGAGATACACACGCGCACGCACACAGGCGAACGACCATTCGAGtgcgatgtttgtttgaaacgCTTCACGCAGAAATCGACACTCAACATTCACAAGCGCATTCATACTGGTGAACGGCCGTATGCCTGTGATATTTGTCAGAAACGATTTGCTGTGAAAAGTTACGTAACAGCTCACagATGGTCGCACGTAGCGGACAAGCCCCTTAACTGTGATCGGTGCTCGATGACATTCACGTCAAAATCCCAGTTCGCTCTTCACATCCGCACGCATTCCGCCGGCTCTTGCTACGAGTGCAGCGTCTGTGGCCGGAGCTTCGTTAGAGATAGCTATCTTATAAGACATCACAACCGAGTACATCGTGAGAACCACAGTAACGTGTCAGCGAACAGTATCGGAACTTTGAATAGTATCGCAACAAATACGAACAATTCTAACAGTAATTTTGATTCACCGGGTGTTTGTGACTTGagTTTCGTGCCAATGGTGAATCGATATATGACTTCGCAAGGGACGCAAGTGTCAATGCAGGATACACAAAGTAAAATGTCAGCCATGTCACCTCAGTCCATTGCGTCTATGTCATCACCCCCTCCATCACATACCCCAACGCCCCAGCCCCAGATGTCAGGCCAGATGCATCTGACTGACTGA
Protein Sequence
MFEQQIKAEPMSFYTSHPHIHSGPPTIVRSDSNQGIINMHHQHHQEDSKDSLIQQQVQHQQDLMEQHQHQQQEMHQQDDELSFKGIDDEGVELEMDSRHCSQGMGVDMGSVQTKMEVSNGGQPTTRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTEQRVIDSVLFVGMAWVLDEHMRALLVKDRPYKCELCQMRFTQSSSLNRHKKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHTRTHTGERPFECDVCLKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHSAGSCYECSVCGRSFVRDSYLIRHHNRVHRENHSNVSANSIGTLNSIATNTNNSNSNFDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTQSKMSAMSPQSIASMSSPPPSHTPTPQPQMSGQMHLTD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00686557;
90% Identity
iTF_01312388;
80% Identity
-