Ssub002426.1
Basic Information
- Insect
- Sarcophaga subvicina
- Gene Symbol
- bab2_2
- Assembly
- GCA_936440885.2
- Location
- CAKZFJ020000012.1:1883370-1885711[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.1e-12 2.3e-08 34.5 0.0 4 45 433 474 430 474 0.91 2 2 8.1 2.3e+04 -3.9 0.8 4 19 570 585 570 586 0.72
Sequence Information
- Coding Sequence
- ATGGGTGGCCCACCAGGAGGCCCTTTATCATCGCTTGGTCCACCAGAGGGTCAAACGTATTGCCTGCGCTGGAACAATCACAAATCGAATTTGGTGGAGATTTTAGATTCGCTTATCAGAGCAGAAAGTTATGTAGACTGTACTATAATAGTAGACGATAATCAATTCAAGGCCCATCGTGTGATATTAGCTGCCAATTCACCATATTTTGAATCTATTTTACAGGATTTGCCCATGGATCACTGTAGTATTATATTTCCAGGTGTGAAGGCCTTCGAAATGCGTGCCTTGCtcgaatatatgtatacagGGGAGGTTAATGTCACCCAAAGTCAAATACCGAAAATAATGCGCATAGCTGAGGAGTTAGAGGTGAAGGGGCTATTTGATATGGCAGATTTGaaagagaaatttaataaattaagtgaAGAACATGCCGAGAGAACAACTAGCAATCCTTACACCAGTACAATGGCTCCCACGAATCCATATTTCTCGGTAAGCACTACCTCATCGCCTTCAACCGGCCTCACCAGTACAAAAGCCAGCCTTAAAGAAACCGATAGTTATCGCAATAATAATTCCTCCGCCGTGATCTCTACCTCGTCTAATATATCGCCTTCGGCGGCACCCTCAAGTAGTTCATCGCCTCCCTATACTAACTATAAATCGCCGTATGCTAGTTTATATACCAAGTCCCCGGGACCAAATGTAAGTCAATCGAATCCTGCCGTTCAAGCTCAATCAACCAATCAACAGACTACGTCTAGTAATCTTACGCCTACCAGTGAGCGTTCGCCTGCTCAATGGCCCCTGTCACCTTCCGCAGCTGCTGTTGCCATGTTGAGCTCGGTATACGAATCTGCCCCCGATATGAATCCTTTAAAACGCAAAAAACTATCCTCTATGTCTAGTATGTTAATGAATCGCGATACACCCATCTTACGCAATGTCCTGGCTCAAACCAATCCGGCGGATTCATCACAACAACTGCCGCTGTTAATGCCAAATGCATCAGGTAATATCAAAAACGATAAGTCGTCGTCCTCCGGTTCAGTGAGTGGTAATCTTGGTAATCTTGATAAGAGTTTAAGTAGCCTTAGCAATAATCACAGTTTTAATGGTTCAGATTATGGCGACAAGAAATTCCACGATGAGCCTCATTCGCCATTTACCGATCGCTCCTTTGATGATGATAGTTTCGATACAAAGAACAGCAGTTTTGGTAGCAATTTCACGAACAGTTCTAATAATCAGAAGCCTGAATGGAAACGCTATAAACAATACACACGTAGCGATATTATGTCTGCCATACAATGCGTACGTGAAGGCATGAGCGCTTTGCAAGCCTCACGCAAATTTGGTGTGCCCTCACGAACTCTGTATGACAAAGTAAAAAAGCTGGGCATTACTACGGGCCGACCTATGAATCGTACCATGAAACGTAGTCCCAGTAGCGTAGAATCCCCGGCTGCCTTTCCCTATTCCCATGGCTATGGACAGGCTTCGACTGTGGTGATGCACGATCCTGCAGGTCCGAGGGACGAACGTGAATTGAAAGAACATCCACGCAATAACGATCACCATCACTTAACATCCTCTCTACCACATCCAGCGGCCGCTTTGCTGGATCATGCTTTTCTGCAACAGGCTTTAGAAAATCGTGGAGGGGGTGATATAGCCGGTCAAAAAGCCTTACATGCTATGGCCATGGCTGCTGCAGCACATGCTGCGCATGCCAATCGTATGTCCACTAGCCCGGGACCCAATGGCAATGCTGTGCGTTCGCCCAGTCCCAATAGTTTTGCGGCCTTAAAATATGGCACCTTACGCAGTGCCGAACACGAGTTAATGGAACGCCAAGAATTAGAGCGTGAACGCGAAAGAGAACGTGAATATGCGGATCACGAGAGAGAACGAGAACTTGATTCTGAACATGAACACGAACATGAACACGAGCATGATTTGCAACGCACTGATCGCGAGGACGATGAAGAAGACCAAGTAGAAGATTTGTCGGTGGCACGCAAAGACAGTAATCTTACACCCCCAGAACCTCACGTCGAATCGCCATTTTCCCCCAACTTACAAGCACCTAGCGAAACTGAAAAATCTGTTATAATGAGCACAACAAAATTGCAAAcgaacacaaacacaaacacacatacgaACACAAACACAAGCACAAACATTGAAGGCAACTCCTCCACCACCTCATTTATTAACGAGACCAACATGAAACGTGAAGTGGTAATTGACGATATACGGGCGGACTGA
- Protein Sequence
- MGGPPGGPLSSLGPPEGQTYCLRWNNHKSNLVEILDSLIRAESYVDCTIIVDDNQFKAHRVILAANSPYFESILQDLPMDHCSIIFPGVKAFEMRALLEYMYTGEVNVTQSQIPKIMRIAEELEVKGLFDMADLKEKFNKLSEEHAERTTSNPYTSTMAPTNPYFSVSTTSSPSTGLTSTKASLKETDSYRNNNSSAVISTSSNISPSAAPSSSSSPPYTNYKSPYASLYTKSPGPNVSQSNPAVQAQSTNQQTTSSNLTPTSERSPAQWPLSPSAAAVAMLSSVYESAPDMNPLKRKKLSSMSSMLMNRDTPILRNVLAQTNPADSSQQLPLLMPNASGNIKNDKSSSSGSVSGNLGNLDKSLSSLSNNHSFNGSDYGDKKFHDEPHSPFTDRSFDDDSFDTKNSSFGSNFTNSSNNQKPEWKRYKQYTRSDIMSAIQCVREGMSALQASRKFGVPSRTLYDKVKKLGITTGRPMNRTMKRSPSSVESPAAFPYSHGYGQASTVVMHDPAGPRDERELKEHPRNNDHHHLTSSLPHPAAALLDHAFLQQALENRGGGDIAGQKALHAMAMAAAAHAAHANRMSTSPGPNGNAVRSPSPNSFAALKYGTLRSAEHELMERQELEREREREREYADHERERELDSEHEHEHEHEHDLQRTDREDDEEDQVEDLSVARKDSNLTPPEPHVESPFSPNLQAPSETEKSVIMSTTKLQTNTNTNTHTNTNTSTNIEGNSSTTSFINETNMKREVVIDDIRAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01313731; iTF_01315597; iTF_01313911; iTF_01312938; iTF_01313094; iTF_01314779; iTF_01314586;
- 90% Identity
- iTF_01313911;
- 80% Identity
- iTF_01315597;