Scar031515.1
Basic Information
- Insect
- Sarcophaga carnaria
- Gene Symbol
- bab2
- Assembly
- GCA_958299815.1
- Location
- OY283153.1:108084818-108087153[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.4e-12 2.5e-08 34.5 0.0 4 45 433 474 430 474 0.91 2 2 9.5 2.6e+04 -3.9 0.8 4 19 570 585 570 586 0.72
Sequence Information
- Coding Sequence
- ATGGGTGGCCCACCAGGAGGCCCTTTGTCATCGCTTGGTCCACCAGAGGGTCAAACGTATTGCCTGCGCTGGAACAATCACAAATcgaatttggtggagattttaGATTCGCTTATCAGAGCAGAAAGTTATGTAGACTGTACTATAATAGTAGACGATAATCAATTCAAGGCCCATCGTGTGATATTAGCTGCCAATTCACCATATTTTGAATCTATTTTACAGGATTTGCCCATGGATCACTGTAGTATTATATTTCCAGGTGTGAAGGCCTTCGAAATGCGTGCCTTGCTCGAATATATGTATACAGGGGAGGTTAATGTCACCCAAAGTCAAATACCGAAAATAATGCGCATAGCTGAGGAGTTAGAGGTGAAGGGGCTATTTGATATGGCAGATTTGaaagagaaatttaataaattaagtgaAGAACATGCCGAGAGAACAACTAGCAATCCTTACACCAGTACAATGGCTCCCACGAATCCATATTTCTCGGTAAGCACTACCTCATCGCCTTCAACCGGCCTCACTAGTACAAAAGCCAGCCTTAAAGAAACCGATAGTTATCGCAATAATAATTCCTCCGCCGTGATCTCTACCTCGTCTAATATATCGCCTTCAGCGGCACCCTCAAGCAGTTCATCGCCTCCCTATACTAACTATAAATCGCCGTATGCTAGTTTATATACCAAGTCCCCGGGACCAAATGTAAGTCAATCGAATCCTGCCGTTCAAGCTCAATCAACCAATCCACAGACTACGTCTAGTAATCTTACGCCTACCAGTGAGCGTTCGCCTGCTCAATGGCCCCTGTCACCTTCCGCAGCTGCTGTTGCCATGTTGAGTTCGGTATACGAATCTGCCCCCGATATGAATCCTTTAAAACGCAAAAAACTATCCTCTATGTCTAGTATGCTAATGAATCGCGATACACCCATCTTACGCAATGTCCTGGCTCAAACCAATCCGGCGGATTCATCACAACAACTGCCGCTTTTAATGCCAAATGCATCAGGTAATATCACAACCGATAAGTCGTCGTCCTCCGGTTCAGTGAGTGGTAATCTTGGTAATCTTGATAAGAGTTTAAGTAGCCTTAGCAATAATCACAGTTTTAATGGTTCAGATTATGGCGACAAGAAATTCCACGATGAGCCTCATTCGCCATTTACCGATCGCTCCTTTGATGATGATAGTTTCGATACAAAGAACAGCAGTTTTGGTAGCAATTTCACGAACAGTTCTAATAATCAGAAACCTGAATGGAAACGCTATAAACAATACACACGCAGCGATATTATGTCTGCCATACAATGCGTACGTGAAGGCATGAGCGCTTTGCAAGCCTCACGTAAATTTGGTGTGCCCTCACGAACTCTGTATGACAAAGTCAAAAAGCTGGGCATTACTACGGGCCGACCTATGAATCGTACCATGAAACGTAGTCCCAGTAGCGTAGAATCCCCGGCTGCCTTTCCCTATTCCCATGGCTATGGACAAGCTTCGACTGTGGTGATGCACGATCCTGCAGGTCCGAGGGACGAACGTGAATTGAAAGAACATCCACGCAATAACGATCACCATCACTTAACATCCTCTCTACCACATCCAGCGGCCGCTTTGCTCGATCATGCTTTTCTGCAACAGGCTTTAGAAAATCGTGGAGGGGGTGATATAGCCGGTCAAAAAGCCTTACATGCTATGGCCATGGCTGCTGCTGCACATGCTGCGCATGCCAATCGTATGTCCACTAGCCCAGGACCCAATGGCAATGCTGTGCGTTCGCCCAGTCCGAACAGTTTTGCGGCCTTAAAATATGGCACCTTACGCAGTGCTGAACACGAGTTAATGGAACGCCAAGAATTAGAGCGTGAACGCGAAAGAGAACGTGAATATGCGGATCACGAGAGAGAACGAGAACTTGATTctgaacatgaacatgaacacGAGCATGATTTGCAACGCACTGATCGCGAGGACGATGAAGAAGACCAAGTAGAAGATTTGTCGGTGGCACGCAAAGACAGTAATCTTACACCCCCAGAACCTCACGTCGAATCGCCATTTTCCCCCAACTTACAAGCACCTAGCGAAACTGAAAAATCTGTTATAATGAGTACTACAAAATTACAAAcgaacacaaatacaaacacacatacgaACACAAACACAAGCACAAATATTGAAGACAACTCCTCCGCCACCTCATTTATTAACGAGACCAACATGAAACGTGAAGTGGTAATTGATGATATACGGGCGGACTGA
- Protein Sequence
- MGGPPGGPLSSLGPPEGQTYCLRWNNHKSNLVEILDSLIRAESYVDCTIIVDDNQFKAHRVILAANSPYFESILQDLPMDHCSIIFPGVKAFEMRALLEYMYTGEVNVTQSQIPKIMRIAEELEVKGLFDMADLKEKFNKLSEEHAERTTSNPYTSTMAPTNPYFSVSTTSSPSTGLTSTKASLKETDSYRNNNSSAVISTSSNISPSAAPSSSSSPPYTNYKSPYASLYTKSPGPNVSQSNPAVQAQSTNPQTTSSNLTPTSERSPAQWPLSPSAAAVAMLSSVYESAPDMNPLKRKKLSSMSSMLMNRDTPILRNVLAQTNPADSSQQLPLLMPNASGNITTDKSSSSGSVSGNLGNLDKSLSSLSNNHSFNGSDYGDKKFHDEPHSPFTDRSFDDDSFDTKNSSFGSNFTNSSNNQKPEWKRYKQYTRSDIMSAIQCVREGMSALQASRKFGVPSRTLYDKVKKLGITTGRPMNRTMKRSPSSVESPAAFPYSHGYGQASTVVMHDPAGPRDERELKEHPRNNDHHHLTSSLPHPAAALLDHAFLQQALENRGGGDIAGQKALHAMAMAAAAHAAHANRMSTSPGPNGNAVRSPSPNSFAALKYGTLRSAEHELMERQELEREREREREYADHERERELDSEHEHEHEHDLQRTDREDDEEDQVEDLSVARKDSNLTPPEPHVESPFSPNLQAPSETEKSVIMSTTKLQTNTNTNTHTNTNTSTNIEDNSSATSFINETNMKREVVIDDIRAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01315432;
- 90% Identity
- iTF_01313911;
- 80% Identity
- iTF_01313911;