Ssub017332.1
Basic Information
- Insect
- Sarcophaga subvicina
- Gene Symbol
- -
- Assembly
- GCA_936440885.2
- Location
- CAKZFJ020000185.1:31398-33278[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.2e-08 3.5e-05 24.3 0.0 7 39 405 437 402 441 0.87 2 4 2e-14 5.7e-11 42.9 0.0 5 44 457 496 454 497 0.93 3 4 0.014 40 4.9 0.0 27 38 526 537 522 543 0.88 4 4 4.6e-16 1.3e-12 48.1 0.1 4 41 565 602 563 604 0.93
Sequence Information
- Coding Sequence
- ATGAATCATTTAAAATGGATGGGCCATTCGGCCACTATATTAGATATACATAAAAGTCTTCGGGCAGACTTAAAGAGTTGTGAAGTAACGCTGGTGGCCAAGGGACACTGTGTTAAAGCCCACCGGTTTGTGCTCTCTTCTTGCAGTGATCTGTTACGTTGCCTTTTAACGGATATACCCATGGGCCAGGAATGTTGTGTAATGGTACCTGACGTAAAAGGCCATTTGTTAGATAGTGTTTTGGCGTTTATATATTTGGGTGAATGTTCATTGTCGTCTACAAACTTATCAGAGTTCTTGGAAGCCATCAATATATTGGGCATTAAAAGTGCAATTAGTTTTGAGTGTAATACAAATGCTTTGCAAGCTGCGCAAAACAacagtcaacaacatcatcacaTTCCATTGGACAGTAACACAACGATGGCTACCACGAGTAGTGGTAGCCGCCATGTGACAGTAGCGGCCGCCACAGTTGACACATCAATGCATCAGGAGGAGTTAATAGAAGCCCATAGTGTAATTCATAGTGAGCCACACGTTACATCTGCTGCAAGTGGAGCAAGCAACGCTAACACCACACGAGAATTAGACTTTCTGGATGTTTACCATGAACCTCAGCATAAAATCACATATTCTATAGAACATGTACCGGGATCGACAGCtggcaatgaatttattttaacggAGAATTCAGGAACCTTTACCTTGACACATAGTGGTAAACTTGAGCCAAGTACATCGCCAGCTGAATCCTCAAATATGGAGGTAACCGAAGACGACGGTTGTGATTCGCATATAATCGAAGAATATAGTAGTGGAGATGAGCCATTGATTCAAATAGGAGAAGCTGTACAGGAACACCACAGTGTAACAGTCCAACAAACATCACCgcctcaacaacagcaacagtctACTGCTTCTATACAAACGACAGCCGCTACAACGGCAGCAATTATACAAGTTAAACCAAAAGTGAAAACGCTTAAATTGAAACACCCGCCCGTAACGCAACAAATTATAACGAAAATGGAACAATTACCGCCTGAAGATACTCCGACATCTGGCAATGAGGATCCCATATCCATACTGCAAACATCAAATGAAAGTTTTACTCTACTTAAAGATGCCAGCATGATGTCCACCAGTAACACCAGTCACGATGAGTCTACAGATTATTCGCTAAATAATTCGGGAGCATCGGCGGTAGATTTAGCGTACCAAGCTATGGTTAATGAAGGTATGTCTCTGCCCAAGGCAGCAGTTAAATTCAATGTGTCAAAAACGGAGCTTTGGAGACGAGTTCGTAGTACTGGAGTTGAACAACTTAATAAATCTATCAAACTGGATCCCGATAAAATAGATGTTATCGAACTAGCCAGCCAAGCAGTTATTAATGAGGGTCTATCATTACAAAAGGCCGCCATACGCTATGATATTTCAAAAACTGTGCTTTGGCGCAGAGTTCGCAAGCATCCTCAGTATATGAAGACAGCGCGCGAAAATCCCATTATATCTAAAGCTTATGAACGCCTCAAATCGGGAGAGTCCCTAAAGAGTATATCGCAAGATTTAGATATACCCATGTCAACTTTACACCGGCACAAAGTTCGACTTTCACAGACTGGGCAATTGCCAGATTTCGTAACGTGCAAGAAACGAGACAGTATGTCAAAAGATGATCTAAAACAAAAGCTTGCCAAGGCCGTGCATGCTTGCGTGCACGAAGGCATGTCACAAAATCACGctgcaaatttatttcaaatatcgAAAAGCACTTTATGGCGACATTTACAAAGACGAGTAGCTGAAGCGGAAGCGGCTGAGACTGAGTCCATTGGTGATGAAGATGAAATTAAACAAGAAGTTATTCTAtcttaa
- Protein Sequence
- MNHLKWMGHSATILDIHKSLRADLKSCEVTLVAKGHCVKAHRFVLSSCSDLLRCLLTDIPMGQECCVMVPDVKGHLLDSVLAFIYLGECSLSSTNLSEFLEAINILGIKSAISFECNTNALQAAQNNSQQHHHIPLDSNTTMATTSSGSRHVTVAAATVDTSMHQEELIEAHSVIHSEPHVTSAASGASNANTTRELDFLDVYHEPQHKITYSIEHVPGSTAGNEFILTENSGTFTLTHSGKLEPSTSPAESSNMEVTEDDGCDSHIIEEYSSGDEPLIQIGEAVQEHHSVTVQQTSPPQQQQQSTASIQTTAATTAAIIQVKPKVKTLKLKHPPVTQQIITKMEQLPPEDTPTSGNEDPISILQTSNESFTLLKDASMMSTSNTSHDESTDYSLNNSGASAVDLAYQAMVNEGMSLPKAAVKFNVSKTELWRRVRSTGVEQLNKSIKLDPDKIDVIELASQAVINEGLSLQKAAIRYDISKTVLWRRVRKHPQYMKTARENPIISKAYERLKSGESLKSISQDLDIPMSTLHRHKVRLSQTGQLPDFVTCKKRDSMSKDDLKQKLAKAVHACVHEGMSQNHAANLFQISKSTLWRHLQRRVAEAEAAETESIGDEDEIKQEVILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00199788;
- 90% Identity
- iTF_01315618; iTF_01313929; iTF_01313725; iTF_01314580; iTF_01314798;
- 80% Identity
- iTF_01315618;