Sper017907.1
Basic Information
- Insect
- Sarcophaga peregrina
- Gene Symbol
- -
- Assembly
- GCA_014635995.1
- Location
- CM025792.1:69601097-69602983[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.4e-08 2.9e-05 24.3 0.0 7 39 407 439 404 443 0.87 2 4 2.3e-14 4.7e-11 42.8 0.0 5 44 459 498 456 499 0.93 3 4 0.016 33 4.9 0.0 27 38 528 539 524 545 0.88 4 4 5.4e-16 1.1e-12 48.1 0.1 4 41 567 604 565 606 0.93
Sequence Information
- Coding Sequence
- ATGAATCATTTAAAATGGATGGGCCATTCGGCCACTATATTAGATATACATAAAAGTCTTCGGGCAGACTTAAAGAGTTGTGAAGTAACGCTGGTGGCCAAGGGACACTGTGTTAAAGCCCACCGGTTTGTGCTTTCTTCTTGCAGTGATCTGTTACGCTGCCTTTTAACGGATATACCCATGGGCCAGGAATGTTGTGTAATGGTACCTGACGTAAAGGGCCATTTGTTAGATAGTGTTTTGGCGTTTATATATTTGGGTGAATGTTCATTGTCGTCTACAAACTTATCAGAGTTCTTGGAAGCCATCAATATATTGGGCATTAAAAGTGCAATTAGTTTTGAGTGCAATACAAATGCTTTGCAAGCTGCGCAAAACAACAGccaacatcatcatcacatTCCAATGGATAGCAACACAACGATGGCTACTACGAGTAGTTCTTTGGCAAATCGCCATGTGACAGTAGCAGCCGCCACAGTCGACACAACAATGCATCAGGAGGAATTAATAGAAGCCCATAGTGTAATTCATAGTGAGCCACATGTAACATCTGCTGCAAGTGGAGCAAACAACGCTACCACCACACGAGAATTAGACTTTTTGGATGTTTACCATGAACCACAGCATAAAATCACATATTCGATAGAACATGTACCGGGATCGACAGCTggcaatgaatttattttaacggAGAATTCAGGTACCTTTACTTTGACACACAGTGGTAAGCTTGAGCCAAGTACATCGCCAGCTGAATCTTCAAACATGGAGGTAACCGAAGACGATGGTTGTGATTCGCATATAATCGAAGAATATAGTAGCGGCGATGAGCCATTGATTCAAATAGGAGAAGCTGTACAGGAACACCACAGTGTAACAGTCCAACAAACATCACCGcctcaacagcagcaacagtctACTGCTTCTATACAAACGACAGCCGCTACAACGGCAGCAATTATACAAGTTAAACCAAAAGTGAAAACGCTTAAATTGAAACACCCTCCTGTCACGCAACAAATTATAACGAAAATGGAACAATTGCCGCCTGAAGATACTCCGACATCTGGCAATGAAGATCCCATATCCATACTGCAAACATCAAATGAAAGTTTTACTCTGCTTAAAGATGCCAGCATGATGTCCACCAGTAACACCAGCCACGATGAGTCTACAGATTATTCTCTAAACAATTCGGGAGCATCGGCGGTAGATTTAGCGTACCAGGCTATGGTTAATGAAGGCATGTCTCTGCCCAAGGCAGCAGTTAAATTCAATGTGTCAAAAACGGAGCTTTGGAGACGTGTTCGTAGTACTGGAGTTGAACAACTTAATAAATCTATCAAACTGGATCCCGATAAAATCGATGTTATCGAATTAGCCAGCCAAGCAGTTATTAATGAGGGTCTATCATTACAAAAGGCCGCCATACGTTATGATATTTCAAAGACTGTGCTTTGGCGCAGAGTTCGCAAACATCCTCAGTATATGAAGACAGCGCGGGAAAATCCCATTATATCTAAAGCTTATGAACGCCTCAAATCGGGAGAGTCACTAAAGAGTATATCGCAAGATTTAGATATACCCATGTCAACTTTACACCGGCATAAGGTTCGACTTTCACAGACTGGACAATTGCCAGATTTCGTAACGTGTAAGAAACGGGACAGCATGTCAAAGGATGATCTAAAACAAAAGCTTGCCAAGGCGGTGCATGCTTGCGTGCACGAAGGCATGTCACAAAATCACGCtgcgaatttatttcaaatatccaAAAGCACTTTATGGCGACATTTACAAAGACGAGTAGCTGAAGCGGAAGCGGCTGAGACTGAGTCCATTGGTGATGAAGATGAAATTAAACAAGAAGTTATTCTAtcttaa
- Protein Sequence
- MNHLKWMGHSATILDIHKSLRADLKSCEVTLVAKGHCVKAHRFVLSSCSDLLRCLLTDIPMGQECCVMVPDVKGHLLDSVLAFIYLGECSLSSTNLSEFLEAINILGIKSAISFECNTNALQAAQNNSQHHHHIPMDSNTTMATTSSSLANRHVTVAAATVDTTMHQEELIEAHSVIHSEPHVTSAASGANNATTTRELDFLDVYHEPQHKITYSIEHVPGSTAGNEFILTENSGTFTLTHSGKLEPSTSPAESSNMEVTEDDGCDSHIIEEYSSGDEPLIQIGEAVQEHHSVTVQQTSPPQQQQQSTASIQTTAATTAAIIQVKPKVKTLKLKHPPVTQQIITKMEQLPPEDTPTSGNEDPISILQTSNESFTLLKDASMMSTSNTSHDESTDYSLNNSGASAVDLAYQAMVNEGMSLPKAAVKFNVSKTELWRRVRSTGVEQLNKSIKLDPDKIDVIELASQAVINEGLSLQKAAIRYDISKTVLWRRVRKHPQYMKTARENPIISKAYERLKSGESLKSISQDLDIPMSTLHRHKVRLSQTGQLPDFVTCKKRDSMSKDDLKQKLAKAVHACVHEGMSQNHAANLFQISKSTLWRHLQRRVAEAEAAETESIGDEDEIKQEVILS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00199788;
- 90% Identity
- iTF_01315426;
- 80% Identity
- iTF_01314798;