Basic Information

Insect: Sarcophaga carnaria
Gene Symbol: -
Assembly: GCA_958299815.1
Location: OY283151.1:53545476-53547356[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 1.4e-08 3.8e-05 24.3 0.0 7 39 405 437 402 441 0.87

2 4 2.3e-14 6.3e-11 42.9 0.0 5 44 457 496 454 497 0.93

3 4 0.016 44 4.9 0.0 27 38 526 537 522 543 0.88

4 4 5.4e-16 1.5e-12 48.1 0.1 4 41 565 602 563 604 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	1.4e-08	3.8e-05	24.3	0.0	7	39	405	437	402	441	0.87
2	4	2.3e-14	6.3e-11	42.9	0.0	5	44	457	496	454	497	0.93
3	4	0.016	44	4.9	0.0	27	38	526	537	522	543	0.88
4	4	5.4e-16	1.5e-12	48.1	0.1	4	41	565	602	563	604	0.93

Sequence Information

Coding Sequence: ATGAATCATTTAAAATGGATGGGCCATTCGGCCACTATATTAGATATACATAAAAGTCTTCGGGCAGACTTAAAGAGTTGTGAAGTAACGCTGGTGGCCAAGGGACACTGTGTTAAAGCCCACCGGTTTGTGCTCTCTTCTTGCAGTGATCTGTTACGTTGCCTTTTAACGGATATACCCATGGGCCAGGAATGTTGTGTAATGGTACCTGACGTAAAAGGCCATTTGTTAGATAGTGTTTTGGCGTTTATATATTTGGGTGAATGTTCATTATCGTCTACAAACTTATCAGAGTTCTTGGAAGCCATCAATATATTGGGCATTAAAAGTGCAATTAGTTTTGAGTGTAATACAAATGCTTTGCAAGCTGCGCAAAACAacagtcaacaacatcatcacaTTCCATTGGACAGTAACACAACGATGGCTACCACGAGTAGTGGTAGCCGCCATGTGACAGTAGCGGCCGCCACAGTTGACACATCAATGCATCAGGAGGAGTTAATAGAAGCCCATAGTGTAATTCATAGTGAGCCACACGTTACATCTGCTGTAAGTGGAGCAAGCAGCGCTAACACCACAAGAGAATTAGACTTTTTGGATGTTTACCATGAACCTCAGCATAAAATCACATATTCTATAGAACATGTACCGGGATCGACAGCtggcaatgaatttattttaacggAGAATTCAGGAACCTTTACCTTGACACATAGTGGTAAACTTGAGCCAAGTACATCGCCAGCTGAATCCTCAAATATGGAGGTAACCGAAGACGACGGTTGTGATTCGCATATAATCGAAGAATATAGTAGTGGAGATGAGCCATTGATTCAAATAGGAGAGGCTGTACAGGAACACCATAGTGTAACAGTCCAACAAACATCACCgcctcaacaacagcaacagtctACTGCTTCTATACAAACGACAGCCGCTACAACGGCAGCAATTATACAAGTTAAACCAAAAGTGAAAACGCTTAAATTGAAACACCCGCCCGTAACGCAACAAATTATAACGAAAATGGAACAATTACCGCCTGAAGATACTCCGACATCTGGCAATGAAGATCCCATATCCATACTGCAAACATCAAATGAAAGTTTTACTCTACTTAAAGATGCCAGCATGATGTCCACCAGTAACACCAGTCACGATGAGTCTACAGATTATTCGCTAAATAATTCGGGAGCATCGGCGGTAGATTTAGCGTACCAAGCTATGGTTAATGAAGGTATGTCTCTGCCCAAGGCAGCAGTTAAATTCAATGTGTCAAAAACGGAGCTTTGGAGACGTGTTCGTAGTACTGGAGTTGAACAACTTAATAAATCTATCAAACTGGATCCCGATAAAATAGATGTTATCGAACTAGCCAGCCAAGCAGTTATTAATGAGGGTCTATCATTACAAAAGGCCGCCATTCGCTATGATATTTCAAAAACTGTGCTTTGGCGCAGAGTTCGCAAGCATCCTCAGTATATGAAGACAGCGCGCGAAAATCCCATTATATCTAAAGCTTATGAACGCCTCAAATCGGGAGAGTCCCTAAAGAGTATATCGCAAGATTTAGATATACCCATGTCAACTTTACACCGGCACAAAGTTCGACTTTCACAGACTGGGCAATTGCCAGATTTCGTAACGTGCAAGAAACGAGACAGTATGTCAAAAGATGATCTAAAACAAAAGCTTGCCAAGGCCGTGCATGCTTGCGTGCACGAAGGCATGTCACAAAATCACGctgcaaatttatttcaaatatcgAAAAGCACTTTATGGCGGCATTTACAAAGACGAGTAGCTGAAGCGGAAGCGGCTGAGACTGAGTCCATTGGTGATGAAGATGAAATTAAACAAGAAGTTATTCTAtcttaa
Protein Sequence: MNHLKWMGHSATILDIHKSLRADLKSCEVTLVAKGHCVKAHRFVLSSCSDLLRCLLTDIPMGQECCVMVPDVKGHLLDSVLAFIYLGECSLSSTNLSEFLEAINILGIKSAISFECNTNALQAAQNNSQQHHHIPLDSNTTMATTSSGSRHVTVAAATVDTSMHQEELIEAHSVIHSEPHVTSAVSGASSANTTRELDFLDVYHEPQHKITYSIEHVPGSTAGNEFILTENSGTFTLTHSGKLEPSTSPAESSNMEVTEDDGCDSHIIEEYSSGDEPLIQIGEAVQEHHSVTVQQTSPPQQQQQSTASIQTTAATTAAIIQVKPKVKTLKLKHPPVTQQIITKMEQLPPEDTPTSGNEDPISILQTSNESFTLLKDASMMSTSNTSHDESTDYSLNNSGASAVDLAYQAMVNEGMSLPKAAVKFNVSKTELWRRVRSTGVEQLNKSIKLDPDKIDVIELASQAVINEGLSLQKAAIRYDISKTVLWRRVRKHPQYMKTARENPIISKAYERLKSGESLKSISQDLDIPMSTLHRHKVRLSQTGQLPDFVTCKKRDSMSKDDLKQKLAKAVHACVHEGMSQNHAANLFQISKSTLWRHLQRRVAEAEAAETESIGDEDEIKQEVILS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00199788;
90% Identity: iTF_01315426;
80% Identity: iTF_01313929;