Sper005560.1
Basic Information
- Insect
- Sarcophaga peregrina
- Gene Symbol
- Mbd2
- Assembly
- GCA_014635995.1
- Location
- CM025789.1:132076446-132078365[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-27 1.1e-23 83.2 0.0 1 72 9 75 9 79 0.95 2 2 4.5e-06 0.021 15.1 0.0 27 75 202 259 184 261 0.89
Sequence Information
- Coding Sequence
- ATGCAAATGAACTCGAATATTTCAATTGAACGTAAAAAAGTAGACTGTACTGCCTTGCCAAAAGGATGGCAAAGAGAAGAAGTTTTACGAAAGTCTGGAATCTCAGCTGGAAAAGTTGATGTCTACTATTACAGTCCAACTGGAAAGCGTATTGATAGTAAACCCCAATTGGCACGTTACTTAGGAAATGCCATAGATATAAGcagttttgattttcaaaagggCAATTTTATACAACATTTGCCATCACCCTCAATATCACTGTACCGCTGCATACCTGGTAGTACAACAGTGACTAGTAGTGGTAGTGTTGGTGCTTCTACCAGTAGCAGTGGTTGTGGTATTAGTATTGGTGGTGGTAGTGCCACTATACCAACATTGGGAGGTGGCATTACTATAACACCAGCCAATCATTCAACAGTGGGTCCAAATTTAAAGCGTAAACATAGAATGGCAGCACAAGcagcaaatttaaatttatcttcatcgTCGTcgtcctcctcttcaatttccAGTCATCATACTAGCCTTTTAAGCTCTTGTACAACGATGACGAGCTCAGCATCcaatttgcaattaaaacaaCAGCATTTAGAATTCAGTCGTGCAATGCGTACAGATGTCTCTCTGGTGCCACCAATACGTCAGACTGCCTCGATATTTAAACAACCTGTTACAGTGATACGCAATCATGAGAATTCCAAAACGAAGAACGACACAAAGCAAGGAGCTCAAGATAAACCAAAACAGTTATTTTGGGAAAAGCGTTTAGAGCGTTTGAGGGCGTGCCATGCAACTGGTGAACAATTTGACGATATCGTATTGCCCAAAAGTCTCAAACCATTGGGCCCCAATGTTCACGAACAGACCGTTATGCAATCTCTAGCTACAGCTTTGCATGTTCTCAACACACCCGTTACAGGTCAAACCGCTACGAAGActgaatttcataaaaatgccACAGCTTTTATCAATCCAGACCAACCTTTAATGCAGGGTATTCTCATATCGGAGGATGACATACGAAAGCAAGAGGATCGGGTTAATGTAGCTCGAAGAAAATTGCAAGATGCTTTAAAAGCTTAA
- Protein Sequence
- MQMNSNISIERKKVDCTALPKGWQREEVLRKSGISAGKVDVYYYSPTGKRIDSKPQLARYLGNAIDISSFDFQKGNFIQHLPSPSISLYRCIPGSTTVTSSGSVGASTSSSGCGISIGGGSATIPTLGGGITITPANHSTVGPNLKRKHRMAAQAANLNLSSSSSSSSSISSHHTSLLSSCTTMTSSASNLQLKQQHLEFSRAMRTDVSLVPPIRQTASIFKQPVTVIRNHENSKTKNDTKQGAQDKPKQLFWEKRLERLRACHATGEQFDDIVLPKSLKPLGPNVHEQTVMQSLATALHVLNTPVTGQTATKTEFHKNATAFINPDQPLMQGILISEDDIRKQEDRVNVARRKLQDALKA*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00331517;
- 90% Identity
- iTF_01315499;
- 80% Identity
- -