Sper013944.1
Basic Information
- Insect
- Sarcophaga peregrina
- Gene Symbol
- sip1
- Assembly
- GCA_014635995.1
- Location
- CM025791.1:86997959-87000819[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5.3e-54 7.5e-50 170.7 1.6 1 169 415 577 415 578 0.98 2 3 1e-32 1.4e-28 100.9 7.9 187 275 575 664 574 664 0.98 3 3 0.13 1.9e+03 -1.2 0.0 242 266 676 700 668 713 0.59
Sequence Information
- Coding Sequence
- aTGTCGGATCAGGAATATGAACGCTTCGAAATAACGGATTATGATTTGCAAAACGAATTCAATACAAATAGGCCACGAAGATACCTAAGCAAAGAACAGCAGGTTTATGGGATCTGGGCTACTGATAGCGACAACGATGGTAGAAAATCTTCACGCAGACGTCGCGGTGGCCCAAGTGGTGCTCCTAAAGGCCGTTCGAGCAATAAAGATTACACCGCACCCGTAAGTTTTGTAGCCGGTGGCATACAGCAGTCGGGTAAGAAGAATGATGATAGTAACGATAGTGACGGAAGCAGTCTCATAACCGATGAAGAAGACTCAATGCAAAGCCGGCCTGGTTTTGGTAATGGGGCGGCCAGGCAGAATTTAATGGATGTAGATTCGGCTAATACTAGTGAGGACTCCGAAGGAGATATGGACGTTGGAAATAATCAGCAAACCAGCCAAAAGCCATCGTACTATAATCCCAATCAAACGGGCAGTCCTCAACTGGGAGCCTGGGAACAGCATACTAAGGGTATAGGAGCTAAATTATTGCTTCAAATGGGTTATAAACCTGGCAAGGGTCTGGGCAAAGATCTTCAGGGCATTTCCCAGCCTATAGAAGCTCGTATGCGTAGAGGCAGAGGTGCTATAGGTGCTTATGGCTCCGAAAAACATGCCAGTGTAGGTGGTAAAGGGCAAACGCCACAGCTTGATGAGGATGCACGTGAGACTAAAGAGTTTAGGGAGAAgctaaataaatggaaaaaggGAGGCGATAATAAACAGGATAGAGCCCCCAAGCGCTATTACTACAGATCGGTGGAGGAGGTATTGGAAAAGGGCAAGAACACCAATTATTTTGTCACCGACAAAATGAgcaaaaaacTAGGCAATGTACCCGTAATCGATATGACTGGTCCCGAGAAACGTGTATTAAGTGGCTATCATGCCATAGGCCAAACTAGAGTAATGGACGAGGATCTGTATGAGTTTAGTGAACAACCCAAAAGGTCCGCTCCAAGTTTCTTTGCAATGCCTGAGCTTATGCACAATCTTTCCTTTATTGTGGATACGTGCGAAAAGGATATAATTTCCTTGGATTCTGCTCAAACGGCTGCTGCCGATGGCCGTGTTGTTTTGGAACAGGAAAAGCAACAATTGGAACAAATCGTTCAATTCGAAACTGCTCATATACGTACTCTAGATAGAGTATTAAAATTAGTGGATGAGCTAACCGCACCTGACTCCCAATTGGATTTGGATAGGGCAGAGAAAATCTTTCTGGAATTACAGCAAAACTATGCTCCCGAGTATCAACAATTTGGCATAGGCGATTTGGCTGCTGGCATTATAGCCCCATTGCTAAAGAACCATTTAGCGGATTGGAAACCTTTGGAGAATCCCACTTTGTATGTGGACTTAATAAAGAAATGGCGTGTAATTCTAGAAGGCCATACTGTTCGACAAGAAGATAATCGTTCGAATGTCTTTGATCCTTATTCCTCTTTGATATGGGCTGGCCTGATACCTAGTTTTCGTTCCTGTGCTGAATTTTGGGATGCCAAACAACATCATACCATGGCAGCTTTGTTGGATTGTTGGGCTCCTTTGTTTCCCAGCTGGATATTGGATTCTGTGCTAGAACAGCTTATATTGCCACGTTTAAGTTCAGCGGTTAAAAATTGGGATCCTTTAACGGATACTGTGCCCATACACATGTGGATTTTACCATGGAACTCGATATTGGCCTGGTCGCCACAGGATCGTTCGGCCAGGGCCATGTTAACACCTTGGAAGGGTGCTTTTAATGATGAAGAAATGCAAGTGTTCCTATTGCAGCATATCATACCGAAATTGCAAATGGTTTTAACCGAGTTTGTTATTAATCCTTTGCAACAGGATTTGGAACCCTGGAATCAAGTATGGGAATGGCATGAACTTATACCCACGATACAAATGGCACAACTCTTGGATAAATTCTTCTTTCCCAAATGGATGCAGGTATTGGTGTTGTGGCTTAATCAATCACCGGACTATACGGAAATATCCCGCTGGTATACGGGCTGGAAGAGTATGTTCTCCGAGGAGATTTTAAAAGAACCCAATATAAAAGAGCATCTGAGAAGGGCTCTCGAAATGATGCATCGGGCTACGGATCAGTTAACTAATCCGGTTAACATTGGACCGccaccaccaccaccatccaTCTCTATTGGATCTGCAAGTGCCAGCTCCGGCACAGCTGGAATTCAAGGAGTTGGTTTCACAGAAATGGGCAAGCAAATCTATCGTGTGGGAAAATTGTATTGCTATATTGATCGCAATGTTTGTATGATAAGCGATGCTTCGTTTAAAAACTGGATACCGACACCTTTGCAGCCCATGATCGATAGAGCCATAACGGGCATATAA
- Protein Sequence
- MSDQEYERFEITDYDLQNEFNTNRPRRYLSKEQQVYGIWATDSDNDGRKSSRRRRGGPSGAPKGRSSNKDYTAPVSFVAGGIQQSGKKNDDSNDSDGSSLITDEEDSMQSRPGFGNGAARQNLMDVDSANTSEDSEGDMDVGNNQQTSQKPSYYNPNQTGSPQLGAWEQHTKGIGAKLLLQMGYKPGKGLGKDLQGISQPIEARMRRGRGAIGAYGSEKHASVGGKGQTPQLDEDARETKEFREKLNKWKKGGDNKQDRAPKRYYYRSVEEVLEKGKNTNYFVTDKMSKKLGNVPVIDMTGPEKRVLSGYHAIGQTRVMDEDLYEFSEQPKRSAPSFFAMPELMHNLSFIVDTCEKDIISLDSAQTAAADGRVVLEQEKQQLEQIVQFETAHIRTLDRVLKLVDELTAPDSQLDLDRAEKIFLELQQNYAPEYQQFGIGDLAAGIIAPLLKNHLADWKPLENPTLYVDLIKKWRVILEGHTVRQEDNRSNVFDPYSSLIWAGLIPSFRSCAEFWDAKQHHTMAALLDCWAPLFPSWILDSVLEQLILPRLSSAVKNWDPLTDTVPIHMWILPWNSILAWSPQDRSARAMLTPWKGAFNDEEMQVFLLQHIIPKLQMVLTEFVINPLQQDLEPWNQVWEWHELIPTIQMAQLLDKFFFPKWMQVLVLWLNQSPDYTEISRWYTGWKSMFSEEILKEPNIKEHLRRALEMMHRATDQLTNPVNIGPPPPPPSISIGSASASSGTAGIQGVGFTEMGKQIYRVGKLYCYIDRNVCMISDASFKNWIPTPLQPMIDRAITGI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01313000;
- 90% Identity
- -
- 80% Identity
- -