Sric013660.1
Basic Information
- Insect
- Samia ricini
- Gene Symbol
- Mbd2
- Assembly
- None
- Location
- BLXV01000016:3765270-3772233[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-28 9.5e-25 86.2 0.1 1 72 6 72 6 76 0.95 2 2 0.00028 1.4 8.7 0.0 29 72 94 145 79 149 0.79
Sequence Information
- Coding Sequence
- atgatgaatatctccatagagaaaaaaaggtctgattgtccagcccttccaaagggttggcaaaaggaggaagtaataagaaaaacgggtttatctgcaggaaaagtggacgtatactattacagcccaacaggtaaaaagtttcggagtaagcctgagctagttcgttatctcagtgatagtatggacctgtcatgtttcgactttcagcaaggtcaaataaacacaatgctgctgtgcaaggccaagaaagcacgagcgcagtttgactacaggggtgtgcgatcagatgtatcattggtgccaccaattcgtcaaactgcatcaattttcaaacaacctgtgacagtatacaaaacacaagaaagcaaggtaaaaactgatctcaaacaagggatccaagagaaaccgaaacaactattctgggagaaaagacttgaaggtttaacagcatgtgacgcgaatggtgtaatagggacaactactttgcccaaatatattaaatcattgggtccattcacatcagatgccacaaccatccaatcattggcaactgctcttcatgtttcttctcagccaattactggacaaactggctcaaaacaagccatattagagaatccgggggtttttttaaatcctgaacagccgctaatcgctgctgtgactataacaaaagatgacgtccgtcggcaggaggaacgagtgatgcgagcgcggcaacggctgcacgaagccctagcggtcgcgtag
- Protein Sequence
- MMNISIEKKRSDCPALPKGWQKEEVIRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYLSDSMDLSCFDFQQGQINTMLLCKAKKARAQFDYRGVRSDVSLVPPIRQTASIFKQPVTVYKTQESKVKTDLKQGIQEKPKQLFWEKRLEGLTACDANGVIGTTTLPKYIKSLGPFTSDATTIQSLATALHVSSQPITGQTGSKQAILENPGVFLNPEQPLIAAVTITKDDVRRQEERVMRARQRLHEALAVA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01090793;
- 90% Identity
- iTF_00000356;
- 80% Identity
- -