Sric019497.1
Basic Information
- Insect
- Samia ricini
- Gene Symbol
- lrrfip2
- Assembly
- None
- Location
- BLXV01000024:2382471-2413968[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.049 1e+03 -1.1 0.5 251 280 73 102 36 106 0.56 2 3 3.5e-77 7.1e-73 245.7 22.4 1 297 121 400 121 403 0.89 3 3 1 2e+04 -6.9 15.6 2 151 400 446 397 473 0.59
Sequence Information
- Coding Sequence
- atggggcaacgatctgaattggctacgcctcacaatagtgaagacgagagcggcgatgcgttcaccgatggcgattttggtgattccgacgacgaaactattgttgaacggaccgatgactctaaatctcatttacctgttaacgaaactgttaatattgaagtacagaaaacgaacggtgaattaactaattttgaagtattaagttctaacagtacagtagttaatggacagagagacagttacaatcaatcaagcgaatcagagactcaaagtcagactttactagaagtgaggagagattctcactgtgaacaaactccttcgattgtgggaatcctaggagatcaacaaaatcatgcggaacagcggctggcggcgcgacgagcggcgcgggcggaggcgcgagagatccgcatgcgcgagcttgaacgacagcagcgtgaacaggaggaccatgccgacaaggcatatgacatgtatgcagaaacggtgggaaggcgagccggaggtcgactcgcagcgctcagtcccggcggagtgcactcacctcgccgcagttccgaagattccacggatgaggcattcagtatgaaagatcttaggcatgagttgaaagaagtcgaggagaagttccgcaaggcgatgatactgaacgctcagctggacaacgacaaggcggcgctcggttatcagctggaattgctcaaggacaggatagaagaactgcatgaagagtacgcgcaattacagcgcgagcacaaagagaagtgttcagcgcacgagcggttaaagcgtgagcacggctccctcgagcgtgaggtggagggggcgcgggcggcggtggtggctcgcgaggcagccgccgccgcggctggcttcgcctacgtcgaggcgggcgctgcgggggcggagggctgcggcccggtcccggcgctggcgctcgtctcgcaccaagcgcaagcgctgctcaacgatgccggggaggggacactcgatgtccggttgcaaaacctcgtgagctcgaaacaagcgcttgagtccgaagtgcgcaagctgaaactgcagctgaacgaggagcgcacggctcggcagaacggcgtcgccaaccacaacgaccaagagtatgaaaacgaactggagacattgcgcaaggcggtggcggaggcgaagggccgagcggcgcgggcggagtccgaggcggcgctgcaggcggcggcgctggcgcggctggaggcgcaggtgtcgcggctgcgcgcgcggcaagaccaccaggacgagcacgaggaacaactcaagcaggaacgacgacgtctccagagagaggctagagaagccctcaacagagtggaagagctggagacggagaacagtcacctcacgaaacgtctcgacaaactgaaaaacgcgaaatccgcacttctcaaggacctgtga
- Protein Sequence
- MGQRSELATPHNSEDESGDAFTDGDFGDSDDETIVERTDDSKSHLPVNETVNIEVQKTNGELTNFEVLSSNSTVVNGQRDSYNQSSESETQSQTLLEVRRDSHCEQTPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRAGGRLAALSPGGVHSPRRSSEDSTDEAFSMKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSAHERLKREHGSLEREVEGARAAVVAREAAAAAAGFAYVEAGAAGAEGCGPVPALALVSHQAQALLNDAGEGTLDVRLQNLVSSKQALESEVRKLKLQLNEERTARQNGVANHNDQEYENELETLRKAVAEAKGRAARAESEAALQAAALARLEAQVSRLRARQDHQDEHEEQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00820103;
- 90% Identity
- -
- 80% Identity
- -