Sric006603.1
Basic Information
- Insect
- Samia ricini
- Gene Symbol
- bab1
- Assembly
- None
- Location
- BLXV01000013:4961145-4975284[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-17 1.2e-14 53.9 0.0 1 43 63 106 63 108 0.95 2 2 4.3 3.4e+03 -2.0 1.6 6 15 200 209 196 211 0.83
Sequence Information
- Coding Sequence
- atgagtgctttttgttcgcaggcgaggcttattgagagttctcaggcttggctcggaccatccacatcagctattgcagacagttaccagtatcagctgcaatcgatgtggcagaaatgctggaacaccaaccaaaatttggtccacaatctgaggttccgcgaacgcggtccacttaaatcctggaggccggagaccatggctgaagctatcttttccgtactgaaggagggcctgtcactctcccaggctgcaaggaaatatgatataccatacccgacctttgtcttgtacgctaaccgcgttcacaacatgttgggaccgagcgccgatggaggagctgatttgaggccaaaagggcgcggtcgtccgcaaaggattttactgggtgtgtggcccgacgagcacatccgcggagtaatacgcgccgtcgtgttccgagacactcacactccgcactccaatccgcatcacatgcgagagatagaattaccggcttatcctgccatcacggatggcaccgttactcccaacgcgtacgcttcgatcccgtgcggcaacgggcgtgaggagcgtgtctctccgaatgctgctgccgctgccgccgtagcagcagtcgcacatggcctgcgccgtcaaatgtgcaatatggtggtagccgcacaacgcccacccgatcagtcgacgcacctcggcctgccctcgctaccgttgcagtccccacgtatgccatcgccactgtcttctggactcgaatctccgctctgctcacccctgcccccaggacaagccctcgaaccaccgaagcccgctgaccctttccgcccattcgtttcccctcgttccgaaagccgctacagcgaacgtgatgccataatggaatcagttgagatgggccctccgaagactccggtgcctgcaaggaatgggcagccaactcccgccatggagctggatggaccagtagaggagcggggggacatttga
- Protein Sequence
- MSAFCSQARLIESSQAWLGPSTSAIADSYQYQLQSMWQKCWNTNQNLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDTHTPHSNPHHMREIELPAYPAITDGTVTPNAYASIPCGNGREERVSPNAAAAAAVAAVAHGLRRQMCNMVVAAQRPPDQSTHLGLPSLPLQSPRMPSPLSSGLESPLCSPLPPGQALEPPKPADPFRPFVSPRSESRYSERDAIMESVEMGPPKTPVPARNGQPTPAMELDGPVEERGDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00187066;
- 90% Identity
- iTF_01316233;
- 80% Identity
- -