Rfun006342.1
Basic Information
- Insect
- Rosalia funebris
- Gene Symbol
- -
- Assembly
- GCA_037954035.1
- Location
- JAZFAV010000004.1:4475380-4479107[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.1 4.4e+04 -3.5 0.2 23 43 135 155 129 159 0.73 2 11 0.68 1.4e+04 -2.0 0.7 5 46 180 221 176 229 0.79 3 11 4e-05 0.83 11.6 0.0 21 49 252 280 247 284 0.93 4 11 1 2.2e+04 -2.6 0.0 26 45 337 356 319 360 0.78 5 11 0.0026 55 5.8 0.0 21 44 360 383 352 390 0.89 6 11 0.047 9.9e+02 1.7 0.1 18 43 444 469 430 474 0.77 7 11 0.0076 1.6e+02 4.3 0.0 11 48 464 502 459 504 0.82 8 11 3.4e-05 0.71 11.8 0.1 21 48 504 531 500 533 0.89 9 11 0.032 6.8e+02 2.2 0.0 23 44 773 794 766 800 0.86 10 11 0.01 2.1e+02 3.9 0.0 21 52 883 914 880 916 0.88 11 11 0.00023 4.9 9.1 0.1 21 49 939 967 922 972 0.87
Sequence Information
- Coding Sequence
- ATGGACGATGATAATCTTTCcagaaatatatgtaaaaattgcCAAAAAGAACTGGAATTTGTAGCttcgtttataaaaaaatgcaaagaaaactatttatttcttaCTTCGTCGCTGAAACAAGACAAAGATAAGTCTTTCAGTCCTACTTGTGATATTTTAGACTATGTATCAGATGACGACTATACTTCTATTAGAGACACATCACTGTTGAAAATTGAACATATTACTAACAACTTTTCACAGTTGGACGCAGAAAAAGATTCAAAAGGAACGGATACTACATCTAGAGCAGTAAATGAAAATagtcttaaatttaaaaaattccatTGTGCTAATTGTAATAAAGGATTTCACACAAAAGGAGAATTAATAGTTCACATTAGGGTACATTCCAATTCTAAACCATTCTCTTGTCAAGAGTGCAATATGAAATTCAAATTTCGTCAATCGCTTCAGAGACATAGACTGATACATAGTAGTATAAGATCGTACAAATGCGACATCTGTGGAAAGGGATTTAAGAGAGCTTTTTCCAGAAATAAGCACCGAAGGATTCATAACAGAGTTAAAAATCATTCAGCTGACGAATCGAAATACAGCTGTACAAAGTGTGATAGAGTTCTAACATCTCACTCTGCTTTAAGTAGCCACATGAAGACACACACAGGCGAAAAACCATACTCCTGTTCTTATTGTGGAAAGCGTTTTCCATATGTTAGTAGTTTGACAGTACATACTCGTTTACATACagGGGAAACCCCTTTTATTTGCTCGCTCTGCAACAAGGGCTATCGAAGTTCAACTAGTTTAAAAAAACACAAGGAAGTAAAACACTTTGAAATTACAGACATTAAACGGGAGGGTGGCAATGAAGACAACAATGGAAAGACTGAGGACTACATGAAAGATAATGATAAACGAGAATGTAAGATTTGCAATAAAATACTACACAAACATGGCTTTGGCACTCACATGAGGATACACACAGTAGAAAAGAAAAAGTTCCTATGTACGTTTTGTAATAAAACTTTCCAAAAGAATTCTCATCTTGAAAGGCATATTAGAATTCACACAGGTGAAAGGCCTTATGTTTGCAAGTTATGTAGTAAAACTTTTAAGCAAGATGGTGACCTCAAACGACATGTACTCATTCATACAGGGCAAAAACAATTCCAATGCCAACATTGTGGTAAACAATATTACAGCAAAGGGTCACTAGTCAGCCACATGGCAGTCCATACCGGCATAAGGCGGACAGTCAATTATGAGTGTAACATCTGCCAAAAATCGTTTAAGCAATGCAGCCACTCCGAATCGCATGGGAAACCTTCTAATGGAGAAAAACCCTACTTATGTACAATTTGCGGCAAATCTTTCACAGCCAGTGGTACCTTGAAGGTACATACAAGGATACATACCGGGGAAACACCTTTTGTGTGTTCATATTGTAGTAAAGGTTTCCATAATTCCAGCAGTTTAAAGAGGCACGTTATGAGGAACCACACCGGAGAGAAACCACACGTGTGTATGATTTGCCATAAAGGTTTCCACGACTCTACGAATTTAAAAAGACATGTAAAACGAGTACACTCTGttctggaaataaaaaaagacaatgAAAAAAGTTTAGTAGTTTTTGTATTAATCTTCGGTATAATGTCGAAAAAAGAACCACATAATGATTTATATTACGAAGATTTCGCAGAAATTTGTCGAGTTTGTTTATCAAATGGTGAATTGAAACCATTTGAACTAAATCTACtagaattattcaaatatttgataAAGTCTGAGGACGATATCGGCGATATTCTTCCCCAAAACATTTGTAAGGCTTGCGTGAAACAGCTAGAagatatttctaattttattaaaaaatgtaaaaataatgaaaacaatctTAAGACAATTTATTTAGAAAGGAACGTGAAGAAATATCTTACTAATAATTCGGATGTGGAATCTGATAGGGAAGACAAttttgaactatttgaaaataacataaagaCTGAAGATATAAAAACTGATATTTCGTCAGTTAAGAACAAGTTAGAGGACTCACAGGCTGTCATTGGTAAGAAAGGGAAAACAAAAAGAGACCTGAGAAGAGaactcaaaaaaataaaaaatcaggcCAATCCTTTAGAGtgcaatatttgtaaaaaaacatattatggAAAATCGGCATTTGCAAACCATGCACGAACTcacaaatacaaaaaagaaCACAAAAAATTTCTGTGCAATATTTGTGgcaaaaatttcataaaaaattcacATCTCGAACGCCATATCAGAACCCACACTGGGATAAAACCTTACGAGTGCAAAGAATGCGGAAAACACTTCGGACAAAGCAATGATCTTAAAAGGCACCTACTGACACACACAAGAGAAAAAGTTTTCCAATGTATTCATTGTGAGAAGGCGTTCCATCAAAAATCATGTTTAGATAACCACATATTAACTCATACTAATGAAAGAAActtcaaatgtaatttttgtgaTAAAAGATTTACGATGAAGGCATACTTAGATGTACACGCAAGGACTCACACAGGAATCAAGCCTTTCCAATGCCTCCATTGTGATAAACAATTCTATCAAAAGAGCGGATTGAATAACCACATCTTAACACACACAGGAGAAAAACCGTATAAGTGTACCGGTTGTGAGAAAACTTTCATACAGTCTAACCATTTAAAAGAGCATTTGAGAATACATAGTGGGGAAAAACCGTTTTTGTGCACCTATTGCGGGAAAGCGTTCGCTTATAGTAGTACGTTGAAAGTACACCTACGTCAACATACTGGTGAAACGCCTTTTATTTGTTCGTTCTGTAACAAAGGATTTCATGATGCTAGTAATCTTAGGCGACACGTTAATCGAAATCATATTAATGTGAAGCCTGTTAAAATTAAGAGTGTCAGTCAAAATATGGTAGCTCAAtactag
- Protein Sequence
- MDDDNLSRNICKNCQKELEFVASFIKKCKENYLFLTSSLKQDKDKSFSPTCDILDYVSDDDYTSIRDTSLLKIEHITNNFSQLDAEKDSKGTDTTSRAVNENSLKFKKFHCANCNKGFHTKGELIVHIRVHSNSKPFSCQECNMKFKFRQSLQRHRLIHSSIRSYKCDICGKGFKRAFSRNKHRRIHNRVKNHSADESKYSCTKCDRVLTSHSALSSHMKTHTGEKPYSCSYCGKRFPYVSSLTVHTRLHTGETPFICSLCNKGYRSSTSLKKHKEVKHFEITDIKREGGNEDNNGKTEDYMKDNDKRECKICNKILHKHGFGTHMRIHTVEKKKFLCTFCNKTFQKNSHLERHIRIHTGERPYVCKLCSKTFKQDGDLKRHVLIHTGQKQFQCQHCGKQYYSKGSLVSHMAVHTGIRRTVNYECNICQKSFKQCSHSESHGKPSNGEKPYLCTICGKSFTASGTLKVHTRIHTGETPFVCSYCSKGFHNSSSLKRHVMRNHTGEKPHVCMICHKGFHDSTNLKRHVKRVHSVLEIKKDNEKSLVVFVLIFGIMSKKEPHNDLYYEDFAEICRVCLSNGELKPFELNLLELFKYLIKSEDDIGDILPQNICKACVKQLEDISNFIKKCKNNENNLKTIYLERNVKKYLTNNSDVESDREDNFELFENNIKTEDIKTDISSVKNKLEDSQAVIGKKGKTKRDLRRELKKIKNQANPLECNICKKTYYGKSAFANHARTHKYKKEHKKFLCNICGKNFIKNSHLERHIRTHTGIKPYECKECGKHFGQSNDLKRHLLTHTREKVFQCIHCEKAFHQKSCLDNHILTHTNERNFKCNFCDKRFTMKAYLDVHARTHTGIKPFQCLHCDKQFYQKSGLNNHILTHTGEKPYKCTGCEKTFIQSNHLKEHLRIHSGEKPFLCTYCGKAFAYSSTLKVHLRQHTGETPFICSFCNKGFHDASNLRRHVNRNHINVKPVKIKSVSQNMVAQY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01310749;
- 90% Identity
- iTF_01310749;
- 80% Identity
- iTF_01310749;