Basic Information

Insect: Rosalia funebris
Gene Symbol: -
Assembly: GCA_037954035.1
Location: JAZFAV010000004.1:4475380-4479107[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.0001 0.012 17.7 1.9 1 23 109 131 109 131 0.98

2 23 0.00031 0.037 16.2 3.0 1 23 137 159 137 159 0.97

3 23 7.2e-06 0.00087 21.3 1.8 1 23 165 187 165 187 0.99

4 23 3.3e-05 0.004 19.3 2.5 1 23 200 222 200 222 0.99

5 23 5.6e-06 0.00067 21.7 0.9 1 23 228 250 228 250 0.98

6 23 0.00041 0.049 15.8 1.6 1 23 256 279 256 279 0.94

7 23 0.61 73 5.8 3.8 2 23 309 329 309 329 0.97

8 23 1.8e-05 0.0022 20.1 4.3 1 23 336 358 336 358 0.95

9 23 1.5e-05 0.0018 20.3 0.6 1 23 364 386 364 386 0.98

10 23 1.6e-05 0.0019 20.3 1.4 1 23 392 414 392 414 0.98

11 23 0.024 2.8 10.3 3.8 1 19 423 441 423 443 0.88

12 23 5.8e-06 0.0007 21.6 0.3 1 23 451 473 451 473 0.96

13 23 3.8e-05 0.0045 19.1 3.4 1 23 479 502 479 502 0.97

14 23 0.00063 0.076 15.2 5.6 1 23 508 531 508 531 0.96

15 23 0.0002 0.023 16.8 0.5 2 23 717 738 716 738 0.97

16 23 1.8e-07 2.2e-05 26.4 2.3 1 23 747 769 747 769 0.96

17 23 1e-06 0.00012 24.1 2.1 1 23 775 797 775 797 0.99

18 23 0.046 5.5 9.4 6.3 1 23 803 825 803 825 0.97

19 23 4.2e-05 0.005 19.0 1.8 1 23 831 853 831 853 0.99

20 23 5.7e-06 0.00068 21.7 3.1 1 23 859 881 859 881 0.99

21 23 1.4e-06 0.00017 23.6 2.5 1 23 887 909 887 909 0.99

22 23 1.8e-06 0.00021 23.3 0.8 1 23 915 937 915 937 0.95

23 23 4.1e-05 0.005 19.0 2.5 1 23 943 966 943 966 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.0001	0.012	17.7	1.9	1	23	109	131	109	131	0.98
2	23	0.00031	0.037	16.2	3.0	1	23	137	159	137	159	0.97
3	23	7.2e-06	0.00087	21.3	1.8	1	23	165	187	165	187	0.99
4	23	3.3e-05	0.004	19.3	2.5	1	23	200	222	200	222	0.99
5	23	5.6e-06	0.00067	21.7	0.9	1	23	228	250	228	250	0.98
6	23	0.00041	0.049	15.8	1.6	1	23	256	279	256	279	0.94
7	23	0.61	73	5.8	3.8	2	23	309	329	309	329	0.97
8	23	1.8e-05	0.0022	20.1	4.3	1	23	336	358	336	358	0.95
9	23	1.5e-05	0.0018	20.3	0.6	1	23	364	386	364	386	0.98
10	23	1.6e-05	0.0019	20.3	1.4	1	23	392	414	392	414	0.98
11	23	0.024	2.8	10.3	3.8	1	19	423	441	423	443	0.88
12	23	5.8e-06	0.0007	21.6	0.3	1	23	451	473	451	473	0.96
13	23	3.8e-05	0.0045	19.1	3.4	1	23	479	502	479	502	0.97
14	23	0.00063	0.076	15.2	5.6	1	23	508	531	508	531	0.96
15	23	0.0002	0.023	16.8	0.5	2	23	717	738	716	738	0.97
16	23	1.8e-07	2.2e-05	26.4	2.3	1	23	747	769	747	769	0.96
17	23	1e-06	0.00012	24.1	2.1	1	23	775	797	775	797	0.99
18	23	0.046	5.5	9.4	6.3	1	23	803	825	803	825	0.97
19	23	4.2e-05	0.005	19.0	1.8	1	23	831	853	831	853	0.99
20	23	5.7e-06	0.00068	21.7	3.1	1	23	859	881	859	881	0.99
21	23	1.4e-06	0.00017	23.6	2.5	1	23	887	909	887	909	0.99
22	23	1.8e-06	0.00021	23.3	0.8	1	23	915	937	915	937	0.95
23	23	4.1e-05	0.005	19.0	2.5	1	23	943	966	943	966	0.96

Sequence Information

Coding Sequence: ATGGACGATGATAATCTTTCcagaaatatatgtaaaaattgcCAAAAAGAACTGGAATTTGTAGCttcgtttataaaaaaatgcaaagaaaactatttatttcttaCTTCGTCGCTGAAACAAGACAAAGATAAGTCTTTCAGTCCTACTTGTGATATTTTAGACTATGTATCAGATGACGACTATACTTCTATTAGAGACACATCACTGTTGAAAATTGAACATATTACTAACAACTTTTCACAGTTGGACGCAGAAAAAGATTCAAAAGGAACGGATACTACATCTAGAGCAGTAAATGAAAATagtcttaaatttaaaaaattccatTGTGCTAATTGTAATAAAGGATTTCACACAAAAGGAGAATTAATAGTTCACATTAGGGTACATTCCAATTCTAAACCATTCTCTTGTCAAGAGTGCAATATGAAATTCAAATTTCGTCAATCGCTTCAGAGACATAGACTGATACATAGTAGTATAAGATCGTACAAATGCGACATCTGTGGAAAGGGATTTAAGAGAGCTTTTTCCAGAAATAAGCACCGAAGGATTCATAACAGAGTTAAAAATCATTCAGCTGACGAATCGAAATACAGCTGTACAAAGTGTGATAGAGTTCTAACATCTCACTCTGCTTTAAGTAGCCACATGAAGACACACACAGGCGAAAAACCATACTCCTGTTCTTATTGTGGAAAGCGTTTTCCATATGTTAGTAGTTTGACAGTACATACTCGTTTACATACagGGGAAACCCCTTTTATTTGCTCGCTCTGCAACAAGGGCTATCGAAGTTCAACTAGTTTAAAAAAACACAAGGAAGTAAAACACTTTGAAATTACAGACATTAAACGGGAGGGTGGCAATGAAGACAACAATGGAAAGACTGAGGACTACATGAAAGATAATGATAAACGAGAATGTAAGATTTGCAATAAAATACTACACAAACATGGCTTTGGCACTCACATGAGGATACACACAGTAGAAAAGAAAAAGTTCCTATGTACGTTTTGTAATAAAACTTTCCAAAAGAATTCTCATCTTGAAAGGCATATTAGAATTCACACAGGTGAAAGGCCTTATGTTTGCAAGTTATGTAGTAAAACTTTTAAGCAAGATGGTGACCTCAAACGACATGTACTCATTCATACAGGGCAAAAACAATTCCAATGCCAACATTGTGGTAAACAATATTACAGCAAAGGGTCACTAGTCAGCCACATGGCAGTCCATACCGGCATAAGGCGGACAGTCAATTATGAGTGTAACATCTGCCAAAAATCGTTTAAGCAATGCAGCCACTCCGAATCGCATGGGAAACCTTCTAATGGAGAAAAACCCTACTTATGTACAATTTGCGGCAAATCTTTCACAGCCAGTGGTACCTTGAAGGTACATACAAGGATACATACCGGGGAAACACCTTTTGTGTGTTCATATTGTAGTAAAGGTTTCCATAATTCCAGCAGTTTAAAGAGGCACGTTATGAGGAACCACACCGGAGAGAAACCACACGTGTGTATGATTTGCCATAAAGGTTTCCACGACTCTACGAATTTAAAAAGACATGTAAAACGAGTACACTCTGttctggaaataaaaaaagacaatgAAAAAAGTTTAGTAGTTTTTGTATTAATCTTCGGTATAATGTCGAAAAAAGAACCACATAATGATTTATATTACGAAGATTTCGCAGAAATTTGTCGAGTTTGTTTATCAAATGGTGAATTGAAACCATTTGAACTAAATCTACtagaattattcaaatatttgataAAGTCTGAGGACGATATCGGCGATATTCTTCCCCAAAACATTTGTAAGGCTTGCGTGAAACAGCTAGAagatatttctaattttattaaaaaatgtaaaaataatgaaaacaatctTAAGACAATTTATTTAGAAAGGAACGTGAAGAAATATCTTACTAATAATTCGGATGTGGAATCTGATAGGGAAGACAAttttgaactatttgaaaataacataaagaCTGAAGATATAAAAACTGATATTTCGTCAGTTAAGAACAAGTTAGAGGACTCACAGGCTGTCATTGGTAAGAAAGGGAAAACAAAAAGAGACCTGAGAAGAGaactcaaaaaaataaaaaatcaggcCAATCCTTTAGAGtgcaatatttgtaaaaaaacatattatggAAAATCGGCATTTGCAAACCATGCACGAACTcacaaatacaaaaaagaaCACAAAAAATTTCTGTGCAATATTTGTGgcaaaaatttcataaaaaattcacATCTCGAACGCCATATCAGAACCCACACTGGGATAAAACCTTACGAGTGCAAAGAATGCGGAAAACACTTCGGACAAAGCAATGATCTTAAAAGGCACCTACTGACACACACAAGAGAAAAAGTTTTCCAATGTATTCATTGTGAGAAGGCGTTCCATCAAAAATCATGTTTAGATAACCACATATTAACTCATACTAATGAAAGAAActtcaaatgtaatttttgtgaTAAAAGATTTACGATGAAGGCATACTTAGATGTACACGCAAGGACTCACACAGGAATCAAGCCTTTCCAATGCCTCCATTGTGATAAACAATTCTATCAAAAGAGCGGATTGAATAACCACATCTTAACACACACAGGAGAAAAACCGTATAAGTGTACCGGTTGTGAGAAAACTTTCATACAGTCTAACCATTTAAAAGAGCATTTGAGAATACATAGTGGGGAAAAACCGTTTTTGTGCACCTATTGCGGGAAAGCGTTCGCTTATAGTAGTACGTTGAAAGTACACCTACGTCAACATACTGGTGAAACGCCTTTTATTTGTTCGTTCTGTAACAAAGGATTTCATGATGCTAGTAATCTTAGGCGACACGTTAATCGAAATCATATTAATGTGAAGCCTGTTAAAATTAAGAGTGTCAGTCAAAATATGGTAGCTCAAtactag
Protein Sequence: MDDDNLSRNICKNCQKELEFVASFIKKCKENYLFLTSSLKQDKDKSFSPTCDILDYVSDDDYTSIRDTSLLKIEHITNNFSQLDAEKDSKGTDTTSRAVNENSLKFKKFHCANCNKGFHTKGELIVHIRVHSNSKPFSCQECNMKFKFRQSLQRHRLIHSSIRSYKCDICGKGFKRAFSRNKHRRIHNRVKNHSADESKYSCTKCDRVLTSHSALSSHMKTHTGEKPYSCSYCGKRFPYVSSLTVHTRLHTGETPFICSLCNKGYRSSTSLKKHKEVKHFEITDIKREGGNEDNNGKTEDYMKDNDKRECKICNKILHKHGFGTHMRIHTVEKKKFLCTFCNKTFQKNSHLERHIRIHTGERPYVCKLCSKTFKQDGDLKRHVLIHTGQKQFQCQHCGKQYYSKGSLVSHMAVHTGIRRTVNYECNICQKSFKQCSHSESHGKPSNGEKPYLCTICGKSFTASGTLKVHTRIHTGETPFVCSYCSKGFHNSSSLKRHVMRNHTGEKPHVCMICHKGFHDSTNLKRHVKRVHSVLEIKKDNEKSLVVFVLIFGIMSKKEPHNDLYYEDFAEICRVCLSNGELKPFELNLLELFKYLIKSEDDIGDILPQNICKACVKQLEDISNFIKKCKNNENNLKTIYLERNVKKYLTNNSDVESDREDNFELFENNIKTEDIKTDISSVKNKLEDSQAVIGKKGKTKRDLRRELKKIKNQANPLECNICKKTYYGKSAFANHARTHKYKKEHKKFLCNICGKNFIKNSHLERHIRTHTGIKPYECKECGKHFGQSNDLKRHLLTHTREKVFQCIHCEKAFHQKSCLDNHILTHTNERNFKCNFCDKRFTMKAYLDVHARTHTGIKPFQCLHCDKQFYQKSGLNNHILTHTGEKPYKCTGCEKTFIQSNHLKEHLRIHSGEKPFLCTYCGKAFAYSSTLKVHLRQHTGETPFICSFCNKGFHDASNLRRHVNRNHINVKPVKIKSVSQNMVAQY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01311236;
90% Identity: iTF_01311236;
80% Identity: iTF_01311236;