Rfun002965.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rosalia funebris
Gene Symbol
tfip11
Assembly
GCA_037954035.1
Location
JAZFAV010000002.1:32990104-33019069[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 2.9e-98 9e-94 315.9 9.9 1 275 405 676 405 676 0.98
2 2 0.077 2.4e+03 -0.4 0.0 156 190 687 720 680 735 0.65

Sequence Information

Coding Sequence
ATGTCTGAAGATGAAATGGAAAAGTTTGAAATTACAGATTATGATCTGGAAAATGAATTCAACATGTATAGAAaccgtaataaaaaaaatactaaacacCATCAGATATATGGCATTTGGGCTGATGATAGTGATCAAGAAGATTCCGTGAAACCATCATTTACGTCTAAGAAACAGCCAAAAAGCTATACAACTCCTATTGGATTTGTAGCAGGGGGTGTTCAACAGGCTGGAAAAAAggataaagaaaaagaaaatgataaagagcTTCGAGAGGAATCAGATGAAGAACCTGCAACGTCTTTTAAAGCCAGAGATAGTTCTGATGAAGAGTCAGATGATGAACTTCCAAGAGCAGgttTTGGTACTGATAAAGCCAAGAAGCCATTACAATCAAATGTTACAGAAATAACAGGTGACATAGCAGGTTTGAGACGAAAAAATAACTTGAATCCATCGTTGATTAACCAAGGAATGGGAAATTGGGAAAAGCATACCAAAGGAATTGGAGCTAAACTTCTTCTTCAAATGGGTTTTCAACCGGGCAAGGGCTTGGGAAAGGATTTACAAGGTATATCAGCACCTGTGGAAGCACATTTAAGGAAAGGAAGAGGTGCTATTGGAGCATATGGACCTGAAAAGCCTGCTACCATTTCCAAGATAAAGgaAAAAGGTTTAAAATTAGATACAGATGATAATGAATACGATAACAAAAAGGGGGAATCCAAATGGAAGAAGACTGATTCTGTAAAGAAGAAAACCAGATATTATTATCGAAGCGTAGATGATGTTATTGAAAAAGGTAAACGTCCTGGAGCTTATAGAAATTTGGGATCCGCAAGtgaACTCAGTAAAGTTAAGGTGATAGACATGACTGGCCCACAACAGAGAGTATTAAGTGGATACCATGCTCTTAGTGGATTAAAAGCTCCTCCTGGTGTAGAACATTTTGAAGATGTTGTACATAAAAAGTGTTCCAATTTTGCATTGCCCGAAATTCAACACAATTTGGATTTATTAGTAGATATTTGCGAACagGATATTATAAGAATAGACCGAAATACTAGATATAACGAAGACAAGATCATTGCTTTGAAGCAGGAAGAGGCATCTTTAAAAGACCTAATGAAAAGAGAAGATGagttaatagaaaatttaagtCAAGTCATGGACATCGTTAATAAACTTATGGACCCCACACAAGGTTATTCGCTAGGGCAAATAGGAGATATATTTAGGAATTTGcagGAGAGCCATTATGAAGAATATTCCAGATATGAATTAGGTGAACTTGCGCCAGGATTAATTGGGCCCCTTTTAACATCTGCATTAGCCAACTGGAATCCATTATCTCAACCTAaccaatatacatatgtttttggACAGTGGAAGGACATCCTGGACAAGCCCAGGCAACGTGGGAATCTAGAAGGTAATAATATGGGAATACAGCCATATGATAGTCTCATATGGCATACTTGGATGCCTGTTATGAGAACTTGTGTTAGTGCGTGGCATCCTCGTGACTGTGATCCTCTAATTACGCTACTAGAGTCATGGAGACCACTCCTTCCTGAATGGATAATAGACAACATATTCGATCAACTTATATTACCGAAACTAACAAATGAAGTCAATACGTGGAATCCACTTACAGacacgataccaatccacatgtgGATACACCCATGGATTCCTCTATTAGATGCAAGACTCCAAATAACGATATATCCAGTCATACAAGAAAAGTTAGGAACAGCTTTGAGCAATTGGCACCCCTCCGATGGATCTGCTAAATTGATGCTTCAACCGTGGCAACGTGCACTTTCCAAGGGAGCATTCGTTGCCTTTGTTCTGAAACACATCGTACCTAAATTGCAGATTTGCATGCAATCTCTTGTAATAAATCCTCATCAGCAACATTTAGATCCATGGAACTGGGTTATGGATTGGAGTGATATGCTTTCTGCTGCAAATATGACGCTTATTCTAGATAAATTTTTCTTCCCAAGATGGCTTCAAACGCTAGCCATGTGGTTAAATCATAATCCAAACTATGCACAAGTCACAGAATGGTATTCAGGATGGAAAAGAATGCTATCTGAAGAACTTCTCAATCAGCCATCTATTAAAGaaaatttccACAAGGCCCTTGAAATGATGAGCAGGGCAGTAAACATTGCTCAACAACCTGGTGCAAAAGAGTCTATTTCTTATCTTAAAAACATTGAAGCTAATGGTTTGCCCACACTACCTCCTCCTCCTAGAGTTGATACTCTAGCTGAAGCTGTGAAAACAGCCTCTAAAATTCCACAAGGATTCAAAGACCTTGTTGCCAAGAGGTGTGAAGAACGGGGTATTATATTTGTGCCGATTCCAAACAAGTATCATGAAGCTAAACAAGTTTACCGAATTGGATCAAATGGTGTACAGTGTTACATAGAcagaaatgtaattttttactcCCAAAATAATTCTACGTGGATTCCTACTTCTCTTAACAAATTACTAGATGTTGCTTAA
Protein Sequence
MSEDEMEKFEITDYDLENEFNMYRNRNKKNTKHHQIYGIWADDSDQEDSVKPSFTSKKQPKSYTTPIGFVAGGVQQAGKKDKEKENDKELREESDEEPATSFKARDSSDEESDDELPRAGFGTDKAKKPLQSNVTEITGDIAGLRRKNNLNPSLINQGMGNWEKHTKGIGAKLLLQMGFQPGKGLGKDLQGISAPVEAHLRKGRGAIGAYGPEKPATISKIKEKGLKLDTDDNEYDNKKGESKWKKTDSVKKKTRYYYRSVDDVIEKGKRPGAYRNLGSASELSKVKVIDMTGPQQRVLSGYHALSGLKAPPGVEHFEDVVHKKCSNFALPEIQHNLDLLVDICEQDIIRIDRNTRYNEDKIIALKQEEASLKDLMKREDELIENLSQVMDIVNKLMDPTQGYSLGQIGDIFRNLQESHYEEYSRYELGELAPGLIGPLLTSALANWNPLSQPNQYTYVFGQWKDILDKPRQRGNLEGNNMGIQPYDSLIWHTWMPVMRTCVSAWHPRDCDPLITLLESWRPLLPEWIIDNIFDQLILPKLTNEVNTWNPLTDTIPIHMWIHPWIPLLDARLQITIYPVIQEKLGTALSNWHPSDGSAKLMLQPWQRALSKGAFVAFVLKHIVPKLQICMQSLVINPHQQHLDPWNWVMDWSDMLSAANMTLILDKFFFPRWLQTLAMWLNHNPNYAQVTEWYSGWKRMLSEELLNQPSIKENFHKALEMMSRAVNIAQQPGAKESISYLKNIEANGLPTLPPPPRVDTLAEAVKTASKIPQGFKDLVAKRCEERGIIFVPIPNKYHEAKQVYRIGSNGVQCYIDRNVIFYSQNNSTWIPTSLNKLLDVA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01289988;
90% Identity
-
80% Identity
-