Basic Information

Insect: Riptortus pedestris
Gene Symbol: -
Assembly: GCA_019009955.1
Location: GWHBAZH00000005:147100502-147124236[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.009 7.2 6.9 0.2 18 48 98 128 89 129 0.79

2 11 0.01 7.9 6.8 0.2 19 48 128 157 125 160 0.81

3 11 0.0093 7.3 6.9 0.1 19 48 157 186 154 189 0.80

4 11 0.0053 4.2 7.7 0.1 18 49 185 216 183 222 0.80

5 11 0.01 8 6.8 1.7 17 48 584 615 580 626 0.83

6 11 0.3 2.3e+02 2.1 0.3 25 48 650 673 641 676 0.79

7 11 0.006 4.7 7.5 1.5 18 48 672 702 668 708 0.84

8 11 0.26 2.1e+02 2.2 0.2 18 49 701 732 699 738 0.84

9 11 0.8 6.3e+02 0.7 0.4 21 45 733 757 726 760 0.75

10 11 0.00036 0.29 11.4 0.5 17 49 758 790 753 794 0.90

11 11 0.0051 4.1 7.7 0.6 22 48 792 818 790 822 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.009	7.2	6.9	0.2	18	48	98	128	89	129	0.79
2	11	0.01	7.9	6.8	0.2	19	48	128	157	125	160	0.81
3	11	0.0093	7.3	6.9	0.1	19	48	157	186	154	189	0.80
4	11	0.0053	4.2	7.7	0.1	18	49	185	216	183	222	0.80
5	11	0.01	8	6.8	1.7	17	48	584	615	580	626	0.83
6	11	0.3	2.3e+02	2.1	0.3	25	48	650	673	641	676	0.79
7	11	0.006	4.7	7.5	1.5	18	48	672	702	668	708	0.84
8	11	0.26	2.1e+02	2.2	0.2	18	49	701	732	699	738	0.84
9	11	0.8	6.3e+02	0.7	0.4	21	45	733	757	726	760	0.75
10	11	0.00036	0.29	11.4	0.5	17	49	758	790	753	794	0.90
11	11	0.0051	4.1	7.7	0.6	22	48	792	818	790	822	0.88

Sequence Information

Coding Sequence: ATGGCAGCTCAAATCTTCAGGCCTTGGGAGTGCGAATCGGTGTCAACTAATATTCAGACAGAGGCTAGGCCCGAAGTAGAATGTTTACCATCAACTTCAAACAGCCTTCAATCACCGTCTTCTGGATTCATTTGGGCTGCAGAAGAAGCAAAGGCCTGTAGCAGTTCACCAGAAGTCCATCAATCCAACGAATGTTCATCTTCCAGTGCTAGGGCTGTGAAACATTTTCAGAGTTTAGAATGCAATTACAATACAAACTTTAGATGCCACGAAAAGGGGACCCTGCAGGCTAAACATTCAAGTGACAAACCCCATTCATGCCCCTACTGTGAATACAGTACAGTTCATAAGGGTAATCTAAAGTATCACATACAGGCTAAACATTCAAGTGACAAACCCCACTCATGCCCCTACTGTGAATACAGTACAGTTCATAAGGGTAATCTAAAGTATCACATACAGGCTAAACATTCAAGTGACAAACCCCATTCATGCCCCTACTGTGAATACAGTGCAGTTCATAAGGGTAATCTAAAGTATCACATGAAGGCTAAACATTCAAGCGACAAACCCCATTCATGCCCCTACTGTGAATACAGTACAGTTCATAAGGGTAATCTAAAGTATCACATGAAGGCTAAACATTCAAGTGACAAACCCCATTCATGCTCTTACTGTAAATACAGTACAGTTCATAAGGCTGCTGGAGGTGGAGATATTTTGCTGACCTCGATTAAAAAAGAAGATTCTTTGGATGAGGAAAGCCTGGCTACGAATACTGTAGCTGCTCCCGCATCTAAGCTTGATGGTGTTGTTCCAGTCAAGAAAGAATCTGAGTTCTATATGGACTATGAGCCATCTGCCTCAGCTGCTGGAGGTGGAGATGTTTTGCTGAGCTCAATTAAAAATGAAGATTCTTTGGATGAAGAAAGCCTGGATACCTATACTGCTCTTCAAGGATCCAGTCAGGAATATGGGCCTGTCAAAATGGAGCCTTATTGTTGTTTTGAGTATGAGCCATCTTCTTCAGGAATAGGATATTCCCTAAGCCATGTAAAGGAGGAAGCTCCTCTAGAACTGCCAGTGGATTTTGTAGAGCTGAAAGATGGAGAGAAGGCTGTCTTCATTTGTTATTACTGCCAGCGAGATTGGAACTCCTTCACTGCTCTCAAGGGATGTGTCAGGAGTTGCTTCGATCACACAATCAATAGGCGAAAGAAGTGCTCATCTGCAACTCCTAGTAACAATGACCGTTTGTCCTATAATGTGAAGAATCACAACCTCTCTAGAAATACAAATGTCAAACCCCTTTCTTGCCCACATTTAGCTGCTCCTGCATCTAATCTTGATGGTGTGGTTCCAGTCAAGAAAGAACCTGAGTACTATATGGACTATGAGCCATCTGCTTCAGCTGCTGGAGGTGGAGATATTTTGCTGACCTCGATTAAAAAAGAAGATTCTTTGGATGAGGAAAGCCTGGCTACGAATACTGCTCTTGGAGGATCAAGTCAGGAATATGGATTTGTCAAAATGGAGCCATATAACAGCTTTGAGTATGAGCCATCTTCTTCAGATGGAGAGAAGGCTGTCTTCATTTGCTATTACTGCCAGCGAGATTGGAACTCCTTCACTGCTCTCAAGGGATGTGTCAGGAGTTGCTTCGATCACACAATCAATAGGCGAAAGAAGTGCTCATCTGCAACTCGTAGTAACAATAATCTGTCCTATAATCTGAACCATCACAACCTCTCTAGAAATACAAATGTCAAACCCCTTTCATGCCCGCATTGTAATTATAGTACTGTTAAGCAGAGTCGTTTTAGGTATCACATTTTGTCTAAACATACAAATGACAAACATCGGTCTTGCCCACATTGTGACTATAGATCTGTAAAGCTGGGTAATCTAAAGAATCACATATTGTCTAAACATACGAATGACGAACTTCACTCCTGCCCATATTGTGAATACAGTGCTGTTGCACTCCGCAATCTAAAACATCACATACTGTCTAAACATACAAATAACAAACCTCACTCCTGCCCTCATTGTGATTATAGTACTGTTCAGCTTTGTAATTTAAAGCGTCACATACTGTCTAAACATACAAATGACAAACCTCATTCCTGCACCCATTGTGATTATAGTACTGTTCAGCTGACACAACTAAAACATCACATACAGGTTAAACATACAAATGACAAACCTCACTCCTGCCCACATTGTGAATACAGTGCTGCTGTACACAGCAATCTAAAATATCACATTTTGTCTAAACATACAAGTGACAAACCTCACTCCTGCCCACATTGTGACTATAGTACTGTTCAGTTGACTAATCTCAAGCATCACATACAGGTTAAGCATACAAATGACAGACCTCACTCCTGCCCCCATTGTGATTATCGTACTGTTCAGCTGAAAAACCTAAAGCGTCACATACTGTCTAAACATAAAAATAACACACCTCACTCCCGGCCCCGTTGTGATTAG
Protein Sequence: MAAQIFRPWECESVSTNIQTEARPEVECLPSTSNSLQSPSSGFIWAAEEAKACSSSPEVHQSNECSSSSARAVKHFQSLECNYNTNFRCHEKGTLQAKHSSDKPHSCPYCEYSTVHKGNLKYHIQAKHSSDKPHSCPYCEYSTVHKGNLKYHIQAKHSSDKPHSCPYCEYSAVHKGNLKYHMKAKHSSDKPHSCPYCEYSTVHKGNLKYHMKAKHSSDKPHSCSYCKYSTVHKAAGGGDILLTSIKKEDSLDEESLATNTVAAPASKLDGVVPVKKESEFYMDYEPSASAAGGGDVLLSSIKNEDSLDEESLDTYTALQGSSQEYGPVKMEPYCCFEYEPSSSGIGYSLSHVKEEAPLELPVDFVELKDGEKAVFICYYCQRDWNSFTALKGCVRSCFDHTINRRKKCSSATPSNNDRLSYNVKNHNLSRNTNVKPLSCPHLAAPASNLDGVVPVKKEPEYYMDYEPSASAAGGGDILLTSIKKEDSLDEESLATNTALGGSSQEYGFVKMEPYNSFEYEPSSSDGEKAVFICYYCQRDWNSFTALKGCVRSCFDHTINRRKKCSSATRSNNNLSYNLNHHNLSRNTNVKPLSCPHCNYSTVKQSRFRYHILSKHTNDKHRSCPHCDYRSVKLGNLKNHILSKHTNDELHSCPYCEYSAVALRNLKHHILSKHTNNKPHSCPHCDYSTVQLCNLKRHILSKHTNDKPHSCTHCDYSTVQLTQLKHHIQVKHTNDKPHSCPHCEYSAAVHSNLKYHILSKHTSDKPHSCPHCDYSTVQLTNLKHHIQVKHTNDRPHSCPHCDYRTVQLKNLKRHILSKHKNNTPHSRPRCD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01309752;
90% Identity: iTF_01309752;
80% Identity: iTF_01309752;