Rped013803.1
Basic Information
- Insect
- Riptortus pedestris
- Gene Symbol
- -
- Assembly
- GCA_019009955.1
- Location
- GWHBAZH00000005:147100502-147124236[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00053 0.031 14.8 2.8 1 23 105 128 105 128 0.94 2 13 0.00053 0.031 14.8 2.8 1 23 134 157 134 157 0.94 3 13 0.00074 0.043 14.4 2.8 1 23 163 186 163 186 0.95 4 13 0.00029 0.017 15.7 3.7 1 23 192 215 192 215 0.95 5 13 3.3 1.9e+02 2.9 0.6 1 13 221 233 221 235 0.86 6 13 0.013 0.73 10.5 2.8 2 23 593 615 592 615 0.95 7 13 0.00099 0.057 14.0 1.3 2 23 622 644 622 644 0.96 8 13 0.017 1 10.1 1.7 1 23 650 673 650 673 0.96 9 13 0.00074 0.043 14.4 5.8 1 23 679 702 679 702 0.96 10 13 0.0027 0.16 12.6 6.0 1 23 708 731 708 731 0.96 11 13 0.013 0.77 10.4 3.5 1 23 737 760 737 760 0.96 12 13 0.00026 0.015 15.8 4.8 1 23 766 789 766 789 0.96 13 13 0.00017 0.0098 16.4 4.1 1 23 795 818 795 818 0.96
Sequence Information
- Coding Sequence
- ATGGCAGCTCAAATCTTCAGGCCTTGGGAGTGCGAATCGGTGTCAACTAATATTCAGACAGAGGCTAGGCCCGAAGTAGAATGTTTACCATCAACTTCAAACAGCCTTCAATCACCGTCTTCTGGATTCATTTGGGCTGCAGAAGAAGCAAAGGCCTGTAGCAGTTCACCAGAAGTCCATCAATCCAACGAATGTTCATCTTCCAGTGCTAGGGCTGTGAAACATTTTCAGAGTTTAGAATGCAATTACAATACAAACTTTAGATGCCACGAAAAGGGGACCCTGCAGGCTAAACATTCAAGTGACAAACCCCATTCATGCCCCTACTGTGAATACAGTACAGTTCATAAGGGTAATCTAAAGTATCACATACAGGCTAAACATTCAAGTGACAAACCCCACTCATGCCCCTACTGTGAATACAGTACAGTTCATAAGGGTAATCTAAAGTATCACATACAGGCTAAACATTCAAGTGACAAACCCCATTCATGCCCCTACTGTGAATACAGTGCAGTTCATAAGGGTAATCTAAAGTATCACATGAAGGCTAAACATTCAAGCGACAAACCCCATTCATGCCCCTACTGTGAATACAGTACAGTTCATAAGGGTAATCTAAAGTATCACATGAAGGCTAAACATTCAAGTGACAAACCCCATTCATGCTCTTACTGTAAATACAGTACAGTTCATAAGGCTGCTGGAGGTGGAGATATTTTGCTGACCTCGATTAAAAAAGAAGATTCTTTGGATGAGGAAAGCCTGGCTACGAATACTGTAGCTGCTCCCGCATCTAAGCTTGATGGTGTTGTTCCAGTCAAGAAAGAATCTGAGTTCTATATGGACTATGAGCCATCTGCCTCAGCTGCTGGAGGTGGAGATGTTTTGCTGAGCTCAATTAAAAATGAAGATTCTTTGGATGAAGAAAGCCTGGATACCTATACTGCTCTTCAAGGATCCAGTCAGGAATATGGGCCTGTCAAAATGGAGCCTTATTGTTGTTTTGAGTATGAGCCATCTTCTTCAGGAATAGGATATTCCCTAAGCCATGTAAAGGAGGAAGCTCCTCTAGAACTGCCAGTGGATTTTGTAGAGCTGAAAGATGGAGAGAAGGCTGTCTTCATTTGTTATTACTGCCAGCGAGATTGGAACTCCTTCACTGCTCTCAAGGGATGTGTCAGGAGTTGCTTCGATCACACAATCAATAGGCGAAAGAAGTGCTCATCTGCAACTCCTAGTAACAATGACCGTTTGTCCTATAATGTGAAGAATCACAACCTCTCTAGAAATACAAATGTCAAACCCCTTTCTTGCCCACATTTAGCTGCTCCTGCATCTAATCTTGATGGTGTGGTTCCAGTCAAGAAAGAACCTGAGTACTATATGGACTATGAGCCATCTGCTTCAGCTGCTGGAGGTGGAGATATTTTGCTGACCTCGATTAAAAAAGAAGATTCTTTGGATGAGGAAAGCCTGGCTACGAATACTGCTCTTGGAGGATCAAGTCAGGAATATGGATTTGTCAAAATGGAGCCATATAACAGCTTTGAGTATGAGCCATCTTCTTCAGATGGAGAGAAGGCTGTCTTCATTTGCTATTACTGCCAGCGAGATTGGAACTCCTTCACTGCTCTCAAGGGATGTGTCAGGAGTTGCTTCGATCACACAATCAATAGGCGAAAGAAGTGCTCATCTGCAACTCGTAGTAACAATAATCTGTCCTATAATCTGAACCATCACAACCTCTCTAGAAATACAAATGTCAAACCCCTTTCATGCCCGCATTGTAATTATAGTACTGTTAAGCAGAGTCGTTTTAGGTATCACATTTTGTCTAAACATACAAATGACAAACATCGGTCTTGCCCACATTGTGACTATAGATCTGTAAAGCTGGGTAATCTAAAGAATCACATATTGTCTAAACATACGAATGACGAACTTCACTCCTGCCCATATTGTGAATACAGTGCTGTTGCACTCCGCAATCTAAAACATCACATACTGTCTAAACATACAAATAACAAACCTCACTCCTGCCCTCATTGTGATTATAGTACTGTTCAGCTTTGTAATTTAAAGCGTCACATACTGTCTAAACATACAAATGACAAACCTCATTCCTGCACCCATTGTGATTATAGTACTGTTCAGCTGACACAACTAAAACATCACATACAGGTTAAACATACAAATGACAAACCTCACTCCTGCCCACATTGTGAATACAGTGCTGCTGTACACAGCAATCTAAAATATCACATTTTGTCTAAACATACAAGTGACAAACCTCACTCCTGCCCACATTGTGACTATAGTACTGTTCAGTTGACTAATCTCAAGCATCACATACAGGTTAAGCATACAAATGACAGACCTCACTCCTGCCCCCATTGTGATTATCGTACTGTTCAGCTGAAAAACCTAAAGCGTCACATACTGTCTAAACATAAAAATAACACACCTCACTCCCGGCCCCGTTGTGATTAG
- Protein Sequence
- MAAQIFRPWECESVSTNIQTEARPEVECLPSTSNSLQSPSSGFIWAAEEAKACSSSPEVHQSNECSSSSARAVKHFQSLECNYNTNFRCHEKGTLQAKHSSDKPHSCPYCEYSTVHKGNLKYHIQAKHSSDKPHSCPYCEYSTVHKGNLKYHIQAKHSSDKPHSCPYCEYSAVHKGNLKYHMKAKHSSDKPHSCPYCEYSTVHKGNLKYHMKAKHSSDKPHSCSYCKYSTVHKAAGGGDILLTSIKKEDSLDEESLATNTVAAPASKLDGVVPVKKESEFYMDYEPSASAAGGGDVLLSSIKNEDSLDEESLDTYTALQGSSQEYGPVKMEPYCCFEYEPSSSGIGYSLSHVKEEAPLELPVDFVELKDGEKAVFICYYCQRDWNSFTALKGCVRSCFDHTINRRKKCSSATPSNNDRLSYNVKNHNLSRNTNVKPLSCPHLAAPASNLDGVVPVKKEPEYYMDYEPSASAAGGGDILLTSIKKEDSLDEESLATNTALGGSSQEYGFVKMEPYNSFEYEPSSSDGEKAVFICYYCQRDWNSFTALKGCVRSCFDHTINRRKKCSSATRSNNNLSYNLNHHNLSRNTNVKPLSCPHCNYSTVKQSRFRYHILSKHTNDKHRSCPHCDYRSVKLGNLKNHILSKHTNDELHSCPYCEYSAVALRNLKHHILSKHTNNKPHSCPHCDYSTVQLCNLKRHILSKHTNDKPHSCTHCDYSTVQLTQLKHHIQVKHTNDKPHSCPHCEYSAAVHSNLKYHILSKHTSDKPHSCPHCDYSTVQLTNLKHHIQVKHTNDRPHSCPHCDYRTVQLKNLKRHILSKHKNNTPHSRPRCD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01309986;
- 90% Identity
- iTF_01309986;
- 80% Identity
- iTF_01309986;