Basic Information

Insect: Riptortus pedestris
Gene Symbol: -
Assembly: GCA_019009955.1
Location: GWHBAZH00000005:146755273-146761042[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 4.7 3.7e+03 -1.8 0.0 26 49 216 239 206 241 0.82

2 16 0.00028 0.22 11.8 0.7 21 49 240 268 233 273 0.86

3 16 0.037 30 4.9 0.2 23 49 271 297 269 302 0.87

4 16 0.05 40 4.5 0.5 22 48 299 325 297 330 0.84

5 16 0.087 69 3.8 0.5 21 44 327 350 323 356 0.77

6 16 0.00044 0.35 11.1 0.5 20 50 359 389 352 393 0.86

7 16 0.0058 4.6 7.5 0.4 17 50 385 418 384 423 0.80

8 16 0.05 40 4.5 0.1 17 48 414 445 412 447 0.89

9 16 0.00028 0.22 11.7 1.1 17 49 443 475 440 478 0.85

10 16 0.046 36 4.7 0.4 21 44 505 528 497 536 0.80

11 16 0.0075 6 7.2 0.5 23 50 540 567 530 570 0.82

12 16 0.011 9 6.6 0.1 17 49 563 595 562 598 0.82

13 16 0.38 3e+02 1.7 0.0 26 50 601 625 596 628 0.85

14 16 0.11 86 3.5 0.4 22 48 626 652 620 657 0.84

15 16 4.2e-05 0.033 14.4 1.0 21 49 658 686 651 690 0.84

16 16 1 8.3e+02 0.3 0.1 20 49 686 715 682 718 0.73

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	4.7	3.7e+03	-1.8	0.0	26	49	216	239	206	241	0.82
2	16	0.00028	0.22	11.8	0.7	21	49	240	268	233	273	0.86
3	16	0.037	30	4.9	0.2	23	49	271	297	269	302	0.87
4	16	0.05	40	4.5	0.5	22	48	299	325	297	330	0.84
5	16	0.087	69	3.8	0.5	21	44	327	350	323	356	0.77
6	16	0.00044	0.35	11.1	0.5	20	50	359	389	352	393	0.86
7	16	0.0058	4.6	7.5	0.4	17	50	385	418	384	423	0.80
8	16	0.05	40	4.5	0.1	17	48	414	445	412	447	0.89
9	16	0.00028	0.22	11.7	1.1	17	49	443	475	440	478	0.85
10	16	0.046	36	4.7	0.4	21	44	505	528	497	536	0.80
11	16	0.0075	6	7.2	0.5	23	50	540	567	530	570	0.82
12	16	0.011	9	6.6	0.1	17	49	563	595	562	598	0.82
13	16	0.38	3e+02	1.7	0.0	26	50	601	625	596	628	0.85
14	16	0.11	86	3.5	0.4	22	48	626	652	620	657	0.84
15	16	4.2e-05	0.033	14.4	1.0	21	49	658	686	651	690	0.84
16	16	1	8.3e+02	0.3	0.1	20	49	686	715	682	718	0.73

Sequence Information

Coding Sequence: ATGATTGCTGCTCCGGGAACTAGCCTTGATGGAGTTCCAGTCAATGAAAAACCTGACTGCTATTTGCATGACAAGCCATCTACTTCAGCTGCTGGAGTTGTAGATTCTGTTCCGAGCTCTATTATTAAAGAAGAGTATTCTTCGTACGAGGGAAGCCTCACATCTACAGCTGCTGGAGATATTGATATTGGGCCAAGCTTCATTATCAAAGAAGAGGATTCTTTGGATGAGGAAAGTCTCTGTATTCCTAGAGGCAGTGAACAAGTGTGGAAACCAATTAAACAGGAACCAGCTGTGGAACTAGGCACTTCTTATGGAGAGCTTGAACATAAAGATAAGGCAGTTTTCATCTGCCATCATTGCCAGCGAGCCTGGAAATCATTCATTTCACTGAGGCGCTGTGTTCAAAAGTGCTTCCATTCAACAGTCACTAAATTCAGCCTCAAAAAGTCACCATCCACTGGAGTAAATACTTCAAGAAGCTATAAAGGTTCAAGGGGAGAAGTGAATTTGTCTAAGGAACGCTTACCTGCAAGTGGTGGGGCTGAGAAATGCTTTGCGTGTTATGAATGCGGCTACAGCACTAATTATAGATACATTTTAAAACAGCACATACAGGTTAAACATTCAAATGACAAACTTCACTCCTGTCCCTACTGTGAACACAGTACTAGTTGGGCTAGTGCTCTAAAACTTCACATACAAGCTAAACATTTGAGTGTTAAACCTCATTCCTGCCCCTACTGTGAATATAGTGGTGTTCAGGCTCGTGATCTAAATCGTCACATCCAAGCTAAACATTTAAAGGTTAAACCTCACTCCTGTCCCTACTGTGAATACAGTGGTAGTCGGGCTGGGAATCTAAAAGTTCACATACAGGTTAAACATTTAAGTGTTAGACCTCACCCCTGCCCCTATTGTGAATATACTGCAGTCCAGCTTGTTAATCTAAAGCATCACATAATGGCTAAACATTCATACGAAAAACCTTACTCCTGCCCCCATTGCGAATACGCTGCTGTTCGGGCTGACAGTCTAAAGGAACACATACTTGCTAATCATTCAAACGACAACTCATCATTGCAACCTCACTCCTGCCCCCACTGCGAATTCACTTCGGTTAGGTCTGGCGATTTAAAACGCCACATACAGAGTAAACACTTAAGTGTTAAACCTCACTCCTGCCCCGACTGTGAATACAGTACTGTTCGGGCTCGTGATCTAAAATTCCACATACAGAGTAAACATTTAAGTGTTAAACCTCACTCCTGCCCAGACTGTGAATACAGTACTGCTTGGGCTCGTGATCTAAAACTTCACATACAGGCTAAACATCAAAGTGTTAAACCTCATTCCTGCCCCTACTGTGAATACAGTTGTGTTCGGGCTGGTAATCTAAAAGTTCACATACAGATTAAACATTTAAGTGTTAAACTTCACTCCTGCCCTTACTGTGAATACAGTACTGGTTGGGCTGGGGATCTAAAAGTTCATATACAGGGTCAACATTTAAGTGATAAACCTTACTCTTGCCCCCATTGCGAATACGCTGCTGTTCGGGCTAACCATCTAAAGGAACACATACTTGCTAATCATTCAAACGACAACTCATTTTTCAAACCTCATTCCTGCCCTCATTGCGAATACAGTTCTGTTAGGTCTAGAGATTTAAAACTCCACATACAGAGTAAACATTTAAGTGTTAAACCTCACTCCTGCCCCTACTGTGAATACAGTACTGTTCGGGCTGGTGATCTAAAAGTTCACATACAGGTTAAACATTTAAGTGTTAAACTTCACTCCTGCCCTTACTGTGAATACAGTACTGGTAGGGCTGGGGATCTAAAAGTTCACATACAGGCAAAACATTTTAGAGATAAACCTTACTCCTGCCCACATTGCGAATACAGTGGTGCTCGGTCTGGCCATCTAAAGCGTCACATACTGTCTAAACATTCAAATGACCACCCATCATTCCAACCTCACTCCTGCCCCCATTGCGAATACAGTTCTGTTAGGTCTAGGGATTTAAAACGCCACATGCAGAGTAAACATTTAAGTGTTAAATCTCACTCCTGCCCCTACTGTGAATACAGTACTGGTCGGGCTAGTGATCTAAAATGTCACATACAGGGAAAACATGTAAGTGTTAAAACTCTGTCGTGCTTCTTTTGTGAATACAGTACTGCTCGGAGAGGCAGTCTGAAATCTCACATAAAAGCTAAGCATTGTAGAGAGAAATCTCCCTTATAG
Protein Sequence: MIAAPGTSLDGVPVNEKPDCYLHDKPSTSAAGVVDSVPSSIIKEEYSSYEGSLTSTAAGDIDIGPSFIIKEEDSLDEESLCIPRGSEQVWKPIKQEPAVELGTSYGELEHKDKAVFICHHCQRAWKSFISLRRCVQKCFHSTVTKFSLKKSPSTGVNTSRSYKGSRGEVNLSKERLPASGGAEKCFACYECGYSTNYRYILKQHIQVKHSNDKLHSCPYCEHSTSWASALKLHIQAKHLSVKPHSCPYCEYSGVQARDLNRHIQAKHLKVKPHSCPYCEYSGSRAGNLKVHIQVKHLSVRPHPCPYCEYTAVQLVNLKHHIMAKHSYEKPYSCPHCEYAAVRADSLKEHILANHSNDNSSLQPHSCPHCEFTSVRSGDLKRHIQSKHLSVKPHSCPDCEYSTVRARDLKFHIQSKHLSVKPHSCPDCEYSTAWARDLKLHIQAKHQSVKPHSCPYCEYSCVRAGNLKVHIQIKHLSVKLHSCPYCEYSTGWAGDLKVHIQGQHLSDKPYSCPHCEYAAVRANHLKEHILANHSNDNSFFKPHSCPHCEYSSVRSRDLKLHIQSKHLSVKPHSCPYCEYSTVRAGDLKVHIQVKHLSVKLHSCPYCEYSTGRAGDLKVHIQAKHFRDKPYSCPHCEYSGARSGHLKRHILSKHSNDHPSFQPHSCPHCEYSSVRSRDLKRHMQSKHLSVKSHSCPYCEYSTGRASDLKCHIQGKHVSVKTLSCFFCEYSTARRGSLKSHIKAKHCREKSPL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01309634;
90% Identity: iTF_01309634;
80% Identity: iTF_01309634;