Basic Information

Insect: Riptortus pedestris
Gene Symbol: -
Assembly: GCA_019009955.1
Location: GWHBAZH00000005:124429806-124440587[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2.4 1.9e+03 -0.9 0.1 19 48 95 124 92 126 0.84

2 18 0.0018 1.4 9.2 0.2 21 50 126 155 121 158 0.89

3 18 0.00026 0.21 11.8 0.8 23 48 157 182 154 186 0.92

4 18 0.0089 7 6.9 0.6 14 48 186 220 183 225 0.90

5 18 0.00017 0.13 12.5 0.9 23 48 224 249 221 253 0.91

6 18 0.00092 0.73 10.1 0.4 23 49 391 417 371 419 0.87

7 18 0.025 20 5.5 0.4 24 48 512 536 504 542 0.87

8 18 0.006 4.7 7.5 0.1 23 49 540 566 537 569 0.91

9 18 0.82 6.5e+02 0.6 0.1 26 48 748 770 739 775 0.86

10 18 0.0042 3.3 8.0 0.1 23 50 774 801 769 805 0.89

11 18 1.1 8.7e+02 0.2 0.1 26 48 1007 1029 1003 1035 0.88

12 18 0.15 1.2e+02 3.0 0.3 23 48 1033 1058 1029 1061 0.90

13 18 0.61 4.8e+02 1.1 0.1 25 48 1315 1338 1302 1344 0.83

14 18 0.044 35 4.7 0.2 23 50 1342 1369 1337 1372 0.89

15 18 0.0019 1.5 9.1 1.0 22 49 1623 1650 1620 1655 0.89

16 18 0.0043 3.4 8.0 1.4 21 48 1651 1678 1647 1681 0.86

17 18 0.0089 7.1 6.9 0.2 26 49 1790 1813 1785 1819 0.88

18 18 0.00052 0.41 10.9 1.8 17 48 1810 1841 1809 1844 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2.4	1.9e+03	-0.9	0.1	19	48	95	124	92	126	0.84
2	18	0.0018	1.4	9.2	0.2	21	50	126	155	121	158	0.89
3	18	0.00026	0.21	11.8	0.8	23	48	157	182	154	186	0.92
4	18	0.0089	7	6.9	0.6	14	48	186	220	183	225	0.90
5	18	0.00017	0.13	12.5	0.9	23	48	224	249	221	253	0.91
6	18	0.00092	0.73	10.1	0.4	23	49	391	417	371	419	0.87
7	18	0.025	20	5.5	0.4	24	48	512	536	504	542	0.87
8	18	0.006	4.7	7.5	0.1	23	49	540	566	537	569	0.91
9	18	0.82	6.5e+02	0.6	0.1	26	48	748	770	739	775	0.86
10	18	0.0042	3.3	8.0	0.1	23	50	774	801	769	805	0.89
11	18	1.1	8.7e+02	0.2	0.1	26	48	1007	1029	1003	1035	0.88
12	18	0.15	1.2e+02	3.0	0.3	23	48	1033	1058	1029	1061	0.90
13	18	0.61	4.8e+02	1.1	0.1	25	48	1315	1338	1302	1344	0.83
14	18	0.044	35	4.7	0.2	23	50	1342	1369	1337	1372	0.89
15	18	0.0019	1.5	9.1	1.0	22	49	1623	1650	1620	1655	0.89
16	18	0.0043	3.4	8.0	1.4	21	48	1651	1678	1647	1681	0.86
17	18	0.0089	7.1	6.9	0.2	26	49	1790	1813	1785	1819	0.88
18	18	0.00052	0.41	10.9	1.8	17	48	1810	1841	1809	1844	0.90

Sequence Information

Coding Sequence: ATGATGAGTAGGAGTGGGGGGGCTCTACTGGAGACTGAAAACTACAAAATCTCGTTTAATATTCAAGATAGTGAAAATATGTATCTAATAATAGTTATGGGCGCTGAAAAGAAAGAAATTGGTACAGACGAAGCTAGTCAAAATCGTCTTCATGGTGTACAGGAATTAGAGTGCTCTTCATCTTACATTCAGTGTTCGGATCCCCTGGCGGGGACTCAAGCATTGGACAAGCCGGCCCAGAATACTCAACACCACGACTCAAAATCTTCTCTTGGTAAATTAAGTGAAGAGGAAAGGTCATTTCTTTGTCCTTATTGCCAATATAAGAACACCAATTCTCATCACGTCAGGTCTCACATTTTGACAAAACACGCTGGCGAGAAACCGTTCTTTTGCCCTTATTGCAAATACCGCTGCCAACAGGGAAAAACGCTAAAATTACACATAAACTTGAAACACCCGCATAAAAAGCCATATGCGTGTAGCCTTTGCAATTACAGAAGTTCTCAATCCAATAACCTCTCAAGGCACTTACATCTAAAGCATTCCCTGACCAAAATTCGCTCTAAGCCCGTTAAACGGAAACCATTGCTTTGCCCCCTTTGCGATTACAGGTGCTCACAAGTCGGTAACATCAAATCTCATATTCGTTTCAAGCACTCCAAAGTAAAGCCTCACGCATGCGCCTTTTGTAAATACAGAAGTTCACAATCGAACAACCTAAGAAGGCACGTGGCATTGAAGCATTCCAAACAGAAACAGACGCGTATGTCTTCTAATTATAAAAAAGAAACTATCAAGACGAATAAGAAAATCACCGGTCCAGAAGACATTTCCTCAAATAACTATAACTTACAATGTTGTAACTATATTTCTCAGGTCAGTTCAGGCAAAAATATCGAAGATCCAGTAGATGAACTCTCCAACAACGCATCACAAGATGATCAACAGAGGTCAATAAAACAACCATCCAAAGGCTCTGATCTTAATAGCATCTTAATTGACCGGAACATCGATGATGACGTAACTCCTGAAAACACTGCTGATACTGATATTGTTGTGGAACAAGTACTTTCATTAAGTGGCCAATACAAATGCTCTTACTGTGACCACCGAAGCAGTCAGCCCGGCAACCTTAAGTCTCATATCTCTTTCAAACATTCTAAAGTGAAGCCTTATAGTTGTCCTTACTGTAGTTACCGAAGCAGCCTCTCTTCCAATGTAAATAGACATGTGAAGCTCAAACACTTTGACATTTTGACTTCATCAAATCAAGGAAGTCAATCTGGTAATAAGTCAGAATTCAATAATAACAAAAATGCCGAATTGTTTTTAAACGAGGAGTGTATTATGAGTGATCTCACCGATAATTCACAACTTGACAGCGTGAAAGCGGTTCCATTTGATGTGGCGGGATCAAACGAAACGCAAATAGACATGGACTCCAAACATCGAAATATAACTGAAGTAAATAATACAAACACTTGCAACCAATTGCCTTATTCTGTTCAAAACCACACCTTCCCTGAAAGAAAGTTTCAGTGCCCCCACTGTGACCACCGCTGTTCTCAGTCTGGTAATCTAAAGTCACATATTGCCTTTAAACACTCCAAAATCAAACCTTTTCGTTGCCCTTACTGCAGTTATGGGAGTTACTTCAGCGGGAACGTAAACAGGCACGTTAGACTGAAACATTTTCAGTTAGCATTTGAAACTATCAGAAGTGCACTAGATAGTACAATGCCCAATGATTCTATTCCATTGTCTAATCAGGCCAATCCTGACAGCAGTTTGCCGGAAGAAGCTAATGTCAATGATCGCTCAACTGAACTAGAAGACTCCGTTAATGTCGGCCCTTCAGAAGCCAACCTTTCTATCAACTTCATCACTGAATCCAGTTTCATAAAGAGCCCAACGCCCAAAATAAAAACTGAAAACAGTGACGAACAGGCCGTCTATCTCCCAAATAACAACTCTCGGGGTTTTTCTCTCGATGACAGTTCATCGGCACCAAGTTTCGTTAATTCTGAAAATACATCCACTATTTGTTCCGCCTTAAATGTAAATCTAAAAGAACCACAACTCGCTTCATGTAAAGAAGTCGGAAGTGACCATTCACTTAGTTTTCATCAAAGAGACATTATTGGGTTAAAAGATTCTACGAATTCAAAAATACAACTTTGGATAAAAAATAACAATAACCAAAACAACGATACAAAATGCCATCAAAACAGGAACTTCCAGTGTCCATATTGTGAACATCGAAGCACTCTATCAGGAAATCTGAAATCTCATATCGCTTTTAAACATTCAAAAATCAAACCCTTTCGCTGTCCACATTGCTCTTATGGTAGTTACTTGTCAGGCAATGTTAACAGGCACATCAAACTCAAACATTTTGACATTGGATCTGTTGCGAGTAATGTCTCCAAAATTCGAGATGAAATAGTTGATGATGCGAGTTGGAACTTGACAGGTTATGAAAACTCACTGACTATAACCTTTAACCCAAATGGGATAAAGTGTAGAAATAATATCGAAAATCGAGTTTCTTCCAGCCTTATTGATAAAGCAAATTTTAATGAGGAAAATGGAAAGCCAACTGCTAATAGTTGTGGTTCAAAAAAACAGGCAGAAATTGGCATAATTGAACAACCATCTTCATGTGACAACAAACCGGAAGGGTCTTTAAACGACTGCAAATTAGCAAATCAAAAATCAGATGAGTTAGTACCGGTTCGAACGAACACTCAAGAGAAATCTACCGGCCCCTCAAGCCTTCAAATAAAGCTTGAACCTCATTGTGACCAAGAAAATGACGTAGAGGTCGACTCTTTTGTTGAGAGTTCTTCGCGTCATAGTTCCTTGAAATCGGAAGATTCATCCTTAGATATGTCTAGGAAGGAAATCACCCATAAATATTCTCATTCTCGCAATGTGGATCTTATTGATACTCATGAACATTTATGGACCAATAATAAAGAACTCACAAAGACTGATAACCAATTAAGAAATTTTCAGTGTCCTTACTGCGATCACAGGAGTACGCTGTCAGGGAACCTTAAATCTCATATCGCCTTTAAACATTCCAAAATCAAACCTCATCGCTGTCCCTATTGTGAATATGGTAGTTACTTATCGAGCAATGTTACCAGGCATGTTAAAATCAAACATTCTGACGTTGGAACTATTCTGAACAATATTACAAAAAATCAGTACGAAGAAACTGGTAATAGTAATTCAGAATTCATCGTGGGCTCTAAAGATATTCCAGTTTTAACTTTGGAACAAAATGAAAGTCATTCCACAAATAATATACAATGTCAACATTCTTTATGTGCTCCTAACCCAAATGATGAGCCGAATGTTCCCTTGAAATTTGAAACTCCCGTAAACATTAAAAGGCGCTTTCCTGACCCGCCGGTAGAAATAGACTTAACGGAAGACACGTCGTGTGACGAAGATCAGAGCTCGGTGGAGTCAAAGCAGCCAAGAACGAGCTCTATAGAACATCCATTAAAGGGGCCAGAACATTCTTTTGCTGATACATCATTAAATGACTGTCACCACATTAACCAAGAATCAGATGGAAATAATTCTATTGATTTGACTTCTCAACCCCATTCAACTAGTGACACAATTGCGAATATAAAGCATGAAAACAAGGACCGCTGTACAACAGAAACTAAGTCTGAGGTCAGTTCTTTTAACGATCATTACTCTCTGTCTAGCTTTGTAGAGTCTGAAAACTCCTCCACCAACTATTCTGATTTCAATGAAAATCTTAATGAACAATTTGATGCTCAAAGATCAGAAAGTACTCACGACGATTCAGTAAGTTTTAGACCGAACGGAATCAATGTGACATTTGATCACGGAAATCCCAAACTACACTCTTGGCCAAGCCGTAATGATAGCACAAAGAATGACCAAAAAAGAAGTTTTCAGTGCCCATACTGCGATCACCGAAGTACGCTTTCAGGGAATCTTAAATCTCATATCGCGTTTAAACATTCTAAAATCAAACCTCATCGCTGCCCCTATTGTGAGTATGGTAGTTACTTATCGAGCAATGTTACCAGGCATGTTAAAATCAAACATTCTGCCGTTGGCCCTTTGTCGGCTAATACCGCTGAAATGCAAAACCATACAATTGATGATAATTCGGGCTTTTTATGTGTACCATCACCATTAAACCCTGTTGATCCGTGCGATTCCCAAAACGGTCTCGTGAAAGCAGAAGATCCTCTAAATATGACCGAGTGTTTTTCAGATACTAAGACTGAAATAAATTTTGTAGAAGACGTATCTTCATGTGGAGAAGGTCTTAGGACAGTGGAAACTAAAAATCTTGGAATGAATTTTGAGAAGTCATTACCCAATAAATTAGAACTTTTTGATATTGTTCCTGTAAATAAGTCTCAGCTGATTACTTCAAATTCAGAAGAAAACATGTTTATGCAAAGTACCAATGTGATATTGGCTGAGGATTCTCATTCCACTCATAGCAGTTCATCATGTGATACTATAAAATCTGAATACACTAAAGAGTCTGCTAATCCTCATGGCGCATTAAATAATGGCAGTGCCTTTCACAATCATAATCAAGTAGATTGCTCAGATTTGCCCACGTTAGAGAATAAAAATCATTTGAGTTACGAAGAAAATTTGTTGTTTAATAGTTCACCTTCTGGCTACGATCTCGGCGAATCTCCGCATACATCTGTCGCACACAACGAAACAAAAACGGAAGATATGAATCACATTAAAGTCGAAACTCACTCTCAATTTTTTTCCAAGGAAATGCCCGCACAACAAAATGGCTCCCAGAACTGTGATTTTCTCGATGCAGCTGTTAACTTTCAGGACAAGCCCTACCACTGCCCTTACTGCGAATATCACTGTTCTCAATCTAGTAATTTGAAAGTTCATATCGCATCTCGCCATTTAAAAGTGAAGCCTTTTCGGTGCTTTTATTGCAACTATAGTAGTTCTCAATCGAGTAACGTGAGAAGGCACTTGCGATTCAAACATCCAAATGCTTCATCTCAATCAGCAATATTAAAGGAGAAAATTTCTCCCCCGAATTGCAACGATGCCCGCTTGAACCCAAAATCTGACTTTCCGTATGATGAGTCAAATTATAATTTTAATAGCTCACATTCGAATTCCTGTGATTCCCGTGGCCCAGGCGAATTCCCTACAAGTCAAGACATATATTCGGAGGTGTCCGAGGTAACTGTTCACAACCAGGGAATACAATATACACCTGGAGAATATGAAAGCTCTTCGGGTACTATTTGTTTGGGTCAACATTTTCCTACTAAAACTATATCCGAACCAATGAAAATCACTAAAAGAGTGTACGAATGCCCTTACTGTGAGCACAAAACCTCACAGAGCAGTAATTTGAAGAGCCATATTGCTTCAAGACATTCAAATGTGAAACCTTATATATGTTCTTATTGCGATTATCGTAGTTCGCAGTCGAGTAACTTTAAAAGACACCTGAGGCTCAGGCATTCCATCGATCAGGTCCCAAAAACTAGATTTCAGCCACCGCATCTTCAAAGTCATCTTCTGAACGTAAGCTGGTGA
Protein Sequence: MMSRSGGALLETENYKISFNIQDSENMYLIIVMGAEKKEIGTDEASQNRLHGVQELECSSSYIQCSDPLAGTQALDKPAQNTQHHDSKSSLGKLSEEERSFLCPYCQYKNTNSHHVRSHILTKHAGEKPFFCPYCKYRCQQGKTLKLHINLKHPHKKPYACSLCNYRSSQSNNLSRHLHLKHSLTKIRSKPVKRKPLLCPLCDYRCSQVGNIKSHIRFKHSKVKPHACAFCKYRSSQSNNLRRHVALKHSKQKQTRMSSNYKKETIKTNKKITGPEDISSNNYNLQCCNYISQVSSGKNIEDPVDELSNNASQDDQQRSIKQPSKGSDLNSILIDRNIDDDVTPENTADTDIVVEQVLSLSGQYKCSYCDHRSSQPGNLKSHISFKHSKVKPYSCPYCSYRSSLSSNVNRHVKLKHFDILTSSNQGSQSGNKSEFNNNKNAELFLNEECIMSDLTDNSQLDSVKAVPFDVAGSNETQIDMDSKHRNITEVNNTNTCNQLPYSVQNHTFPERKFQCPHCDHRCSQSGNLKSHIAFKHSKIKPFRCPYCSYGSYFSGNVNRHVRLKHFQLAFETIRSALDSTMPNDSIPLSNQANPDSSLPEEANVNDRSTELEDSVNVGPSEANLSINFITESSFIKSPTPKIKTENSDEQAVYLPNNNSRGFSLDDSSSAPSFVNSENTSTICSALNVNLKEPQLASCKEVGSDHSLSFHQRDIIGLKDSTNSKIQLWIKNNNNQNNDTKCHQNRNFQCPYCEHRSTLSGNLKSHIAFKHSKIKPFRCPHCSYGSYLSGNVNRHIKLKHFDIGSVASNVSKIRDEIVDDASWNLTGYENSLTITFNPNGIKCRNNIENRVSSSLIDKANFNEENGKPTANSCGSKKQAEIGIIEQPSSCDNKPEGSLNDCKLANQKSDELVPVRTNTQEKSTGPSSLQIKLEPHCDQENDVEVDSFVESSSRHSSLKSEDSSLDMSRKEITHKYSHSRNVDLIDTHEHLWTNNKELTKTDNQLRNFQCPYCDHRSTLSGNLKSHIAFKHSKIKPHRCPYCEYGSYLSSNVTRHVKIKHSDVGTILNNITKNQYEETGNSNSEFIVGSKDIPVLTLEQNESHSTNNIQCQHSLCAPNPNDEPNVPLKFETPVNIKRRFPDPPVEIDLTEDTSCDEDQSSVESKQPRTSSIEHPLKGPEHSFADTSLNDCHHINQESDGNNSIDLTSQPHSTSDTIANIKHENKDRCTTETKSEVSSFNDHYSLSSFVESENSSTNYSDFNENLNEQFDAQRSESTHDDSVSFRPNGINVTFDHGNPKLHSWPSRNDSTKNDQKRSFQCPYCDHRSTLSGNLKSHIAFKHSKIKPHRCPYCEYGSYLSSNVTRHVKIKHSAVGPLSANTAEMQNHTIDDNSGFLCVPSPLNPVDPCDSQNGLVKAEDPLNMTECFSDTKTEINFVEDVSSCGEGLRTVETKNLGMNFEKSLPNKLELFDIVPVNKSQLITSNSEENMFMQSTNVILAEDSHSTHSSSSCDTIKSEYTKESANPHGALNNGSAFHNHNQVDCSDLPTLENKNHLSYEENLLFNSSPSGYDLGESPHTSVAHNETKTEDMNHIKVETHSQFFSKEMPAQQNGSQNCDFLDAAVNFQDKPYHCPYCEYHCSQSSNLKVHIASRHLKVKPFRCFYCNYSSSQSSNVRRHLRFKHPNASSQSAILKEKISPPNCNDARLNPKSDFPYDESNYNFNSSHSNSCDSRGPGEFPTSQDIYSEVSEVTVHNQGIQYTPGEYESSSGTICLGQHFPTKTISEPMKITKRVYECPYCEHKTSQSSNLKSHIASRHSNVKPYICSYCDYRSSQSSNFKRHLRLRHSIDQVPKTRFQPPHLQSHLLNVSW

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01309677;
90% Identity: iTF_01309677;
80% Identity: iTF_01309677;