Rmar007386.1
Basic Information
- Insect
- Ricinus marginatus
- Gene Symbol
- -
- Assembly
- GCA_028565995.1
- Location
- JAOWBB010000011.1:4215227-4235636[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.82 5.9e+03 -2.1 0.0 59 74 119 134 66 136 0.67 2 2 9.5e-13 6.8e-09 36.2 0.1 8 70 156 215 151 220 0.86
Sequence Information
- Coding Sequence
- atgaTAGATGCAAAAGCTGATAAATCTAATACCCAGGAAATATCAGAATTGAAGAAGGAAATGGGAGATGAAGAAGAAACAgttgaaacagaaaaagatgGATTGACTGAAGATGATTTTgacacaaataaattttttaaaattgaagatgGAGAAGAAGAATTTAAAGGCTTTCATTTTATAAGTGGATTTGAAATACAAGAAGTTATGAAAACTTTATCAGAGAAAGAAGAAGATGATcttcaaaatttggaaaaagctCAGAATCATATTTTGCATTCACCTCCATCTAAAAGAAGAAGGGGAGAATATGAAGAAAGTGACTTATCCAGCCATTGCAGTAGTCCTGCCCTAAGTATAAGTTCTCAGCTAAGTGCTTTCAGTTTCAGTAAAAGAAGTATGACGGGCAGTCCTGCATCAAGAGGttctcgAAAGTCAAACGTGGATTTAAGTAATCCTAAATATTTAGTACCATTTGAATTTGGATGGAGAAGAGAAGTTGTTACAAGAGGCATCACCTCCAGGGAAGATGGCATTAGCAAAGacgtttattattttcatccttGCGGAAAAAAGCTGAGATCTCTTCGAGAGGTTTCAGAAAAATtaacaCCAGGAGTtactattgaaaatttcactttttacaaAGAGCCTTTAGGGGCGGATCCCAAATTTGAGACAATTCGAAATGCAAGATGTCAAGGGTACTCACCTTCAGAATCTATGACGCATAAGGCAGCgtcaaacaaaaataaggTGGAGAAATCTCCAGTTAAAACACCACCACCGCCACCTCCTCCTCCGGCGCCGAAAGAAACACCTAAAGGAACCATTccccttaaaaattttgttaaaacacCTAAGGAACCAGGTCCCAAGCCTCTTCCACCTCCAACATCTGCGAAAAAAACCAAGCttatacttaaatttaataagggAACTCCAAAAATTGCTCTGAAAAAACCATCAAACGCAATAAATGGAGaactTAAATCACCAAAAACATTATTACCAAAATTAGAAGGCCCAAAACCACATCCAAATGCCCCATCAGGTCCTAGGAGGAAAATAACacctcgaaaaaaaattccaaataacaataaagaagaaaggaaaggaaatagTAGATCTGATGCTGGTGAACTGGAAATGGGAATGTTGCCTCCGTTATGGAGCCCTTCAGGAACGAGTGCAAAAACGTCGAGCAACGAATCATTATCTTGGAGTCATTTGGATGAGAAaagCACGAATGAAGAAGGTCGCCTGGACCCTTGCACGATACGGTGCACAAAAGCCATGGGGTTGATCCCTACCCTTCAGTGCAGTATATGCTTATGTTTATATCATCCCGAGTGCTGCGATATGGAACCCATAACATCTTATCGTCCTGTACTGAAATATGTATGTAAGaactGCCATACGAAAGCTGCAGAGTCGAAAAGCAGAGGACTAGTGAAGCACATAACACCGGCAAATGTAACGTGTGACAAAAGCCCACCTATTATATCGCCCAAACCCATTCATCCCGTATTGAATTCTCCCGCTTCTCCTTCCGCCCCCGCATCAAGTAGATTGCCGCAGTTAATTAGACCAAAGATACCAACGTCAAAATCTAACGTTTGTGGGGGGTCGACTTGGCTTCCACCTACCAACACAGTTTTCCGATCTCCTGCAGTAACCAAAAGTGGTCAAGTAAAATCAGAAGAAATGTCAACTCCTCTTCAAGCGATCGTTAACATGAATACTAAACGATATATTGTTGTACCGAAGCACAATATTCTCTCACTTGCGTCTAACCAGAATTTATCTCCCACAAAAGCCGATCCTGCTCAGAGTACAACTATTATTACCCCAACCCCAACTTCTACAATAATTCAAGGTCCGCCCTTGCAGAATAATCCATTCATTCAGCCCACTCCTAATTCACCTGGGGTTTTATTAGTACCTTATATGACTTGTGAAAGTATGTCCCCAGATACTGGCTCTCAACAATATTTAGTTGTAAATCCCACAGCCGGTTCGTCGGCGACTCCTGCTAGTCAACCGGACCTTCCTATTGGGAGCGAAACTCCTGATCATTTTACgaaaagaatggaaaagaatTGCAAAAGGCACTCCTCGGACGGTGTCGACGAGTCAATGCAAAAATTCATGCGAAATATCTGCATTGGTTACACGGCACTTCTCAATGTATTCCAATACCTCAAGGTACAAGAATTGTTAAGGGCCGGAAGAGTGTGTCGTCTGTGGCGAGATATCGCAGGTCATTCGTCTTTGTGGCGAACAgtgcgaatgaaaaattcacaagTCTCAGATTGGAAAGGTTTCACGGATTCCCTGTCACGGCATGGAACGAAGCACCTCGATCTGCGGAAAATGTTGGTTTCCCTTGATGAAACCGAAGAAATGTGGATGACGTTttcgaaaaacatttcaagTGTTAAATGCTTAGAACGTTTAGATATGTGCCGAAGTTCGGTGAATGTTATTGAACAGATAATTGATGCTTGTCCACATTTGTTGGTTTTCAATGCTCAGATGATAGGTGTAAAagatCAAACAACTCATCAGAAAAtatcattagaaaatttatcgaaaatgaaaagcttaaAAGAGCTacgaatgaaaagttttttcggACTTCATCTAATGGGTTCCCTTAAATCCCTCACAGATTTGTCAGAGACACTTACGACTCTCTCTCTCACTTCGGTTAAGAATTTGGGTTCGGTCGAGGTTCATTACATAGGGAAGCTTCATCTTCTCGAAGCTCTCGAATTGGGGGAATGTTCTGACTTGCCAGAAAATTTCCCAACTCTTGTCATTGCAAAGcttctcaaattaaaaagaaTAAGATTGGAGAAAGGTCCATGGAAGTGTTCGACAAATGAAATGCTTTACGAAATGAGCaagttaaatgatttaatgcaactggaattaattaatttcgataTTAGACCAGGATTTGACGAAGCTCTTGCGTCTTGTGCAAACATTAAACGTCTTTTGCTGATACCTACTTATGTTACTcaatccgCCAcgacaaataatataattctttgcGGGGCTTTTAAACTTTGGAAAACTTTGACTCATTTTGTTTGGGTTGTCACAATGGAGCTTTTGAAGGTTACGGAATTATTTGTCGATCAATGCGAAGGAAAAGGATCGAAAAAAAGTGGGGGCAATAGTGTTCCGgttttaaagCCAGTTCCTTTACCCGAAGTGCGTAAAGCTGACGATCCCGTTTTGTCGAAGGAAGAAAACGTGGCTGGCTCGAAAAATCCAACTCCAATCACCGTTATACCTATTGATGAACTTTTTGAAATGCTAAAAGAAGCATTGCCCAATACACGCGTTAAACTTCTCAAAATTCCTTTCCAAAATACTTGGCGACAGAGCATCACCGAAGGTAGTTCTACTTccgtgtaa
- Protein Sequence
- MIDAKADKSNTQEISELKKEMGDEEETVETEKDGLTEDDFDTNKFFKIEDGEEEFKGFHFISGFEIQEVMKTLSEKEEDDLQNLEKAQNHILHSPPSKRRRGEYEESDLSSHCSSPALSISSQLSAFSFSKRSMTGSPASRGSRKSNVDLSNPKYLVPFEFGWRREVVTRGITSREDGISKDVYYFHPCGKKLRSLREVSEKLTPGVTIENFTFYKEPLGADPKFETIRNARCQGYSPSESMTHKAASNKNKVEKSPVKTPPPPPPPPAPKETPKGTIPLKNFVKTPKEPGPKPLPPPTSAKKTKLILKFNKGTPKIALKKPSNAINGELKSPKTLLPKLEGPKPHPNAPSGPRRKITPRKKIPNNNKEERKGNSRSDAGELEMGMLPPLWSPSGTSAKTSSNESLSWSHLDEKSTNEEGRLDPCTIRCTKAMGLIPTLQCSICLCLYHPECCDMEPITSYRPVLKYVCKNCHTKAAESKSRGLVKHITPANVTCDKSPPIISPKPIHPVLNSPASPSAPASSRLPQLIRPKIPTSKSNVCGGSTWLPPTNTVFRSPAVTKSGQVKSEEMSTPLQAIVNMNTKRYIVVPKHNILSLASNQNLSPTKADPAQSTTIITPTPTSTIIQGPPLQNNPFIQPTPNSPGVLLVPYMTCESMSPDTGSQQYLVVNPTAGSSATPASQPDLPIGSETPDHFTKRMEKNCKRHSSDGVDESMQKFMRNICIGYTALLNVFQYLKVQELLRAGRVCRLWRDIAGHSSLWRTVRMKNSQVSDWKGFTDSLSRHGTKHLDLRKMLVSLDETEEMWMTFSKNISSVKCLERLDMCRSSVNVIEQIIDACPHLLVFNAQMIGVKDQTTHQKISLENLSKMKSLKELRMKSFFGLHLMGSLKSLTDLSETLTTLSLTSVKNLGSVEVHYIGKLHLLEALELGECSDLPENFPTLVIAKLLKLKRIRLEKGPWKCSTNEMLYEMSKLNDLMQLELINFDIRPGFDEALASCANIKRLLLIPTYVTQSATTNNIILCGAFKLWKTLTHFVWVVTMELLKVTELFVDQCEGKGSKKSGGNSVPVLKPVPLPEVRKADDPVLSKEENVAGSKNPTPITVIPIDELFEMLKEALPNTRVKLLKIPFQNTWRQSITEGSSTSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01308028;
- 90% Identity
- iTF_01308028;
- 80% Identity
- iTF_01308028;