Rarc031051.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ricinus arcuatus
Gene Symbol
-
Assembly
GCA_027475445.1
Location
JAOXJT010000011.1:5129273-5139724[-]

Transcription Factor Domain

TF Family
MBD
Domain
MBD domain
PFAM
PF01429
TF Group
Unclassified Structure
Description
The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 0.99 7e+03 -2.1 0.0 59 74 119 134 66 136 0.67
2 2 1.1e-12 8.1e-09 36.2 0.1 8 70 156 215 151 220 0.86

Sequence Information

Coding Sequence
ATGATAGATGCAAAAGCTGATAAATCTAATACCCAGGAAATATCAGAATTGAAGAAGGAAATGGGAGATGAAGAAGAAACAGTTGAAACAGAAAAAGATGGATTGACTGAAGATGATTTTGACACAAATAAATTTTTTAAAATTGAAGATGGAGAAGAAGAATTTAAAGGCTTTCATTTTATAAGTGGATTTGAAATACAAGAAGTTATGAAAACTTTATCAGAGAAAGAAGAAGATGATCTTCAAAATTTGGAAAAAGCTCAGAATCATATTTTGCATTCACCTCCATCTAAAAGAAGAAGGGGAGAATATGAAGAAAGTGACTTATCCAGCCATTGCAGTAGTCCTGCCCTAAGTATAAGTTCTCAGCTAAGTGCTTTCAGTTTCAGTAAAAGAAGTATGACGGGCAGTCCTGCATCAAGAGGTTCTCGAAAGTCAAACGTGGATTTAAGTAATCCTAAATATTTAGTACCATTTGAATTTGGATGGAGAAGAGAAGTTGTTACAAGAGGCATCACCTCCAGGGAAGATGGCATTAGCAAAGACGTTTATTATTTTCATCCTTGCGGAAAAAAGCTGAGATCTCTTCGAGAGGTTTCAGAAAAATTAACACCAGGAGTTACTATTGAAAATTTCACTTTTTACAAAGAGCCTTTAGGGGCGGATCCCAAATTTGAGACAATTCGAAATGCAAGATGTCAAGGGTACTCACCTTCAGAATCTATGACGCATAAGGCAGCGTCAAACAAAAATAAGGTGGAGAAATCTCCAGTTAAAACACCACCACCGCCACCTCCTCCTCCGGCGCCGAAAGAAACACCTAAAGGAACCATTCCCCTTAAAAATTTTGTTAAAACACCTAAGGAACCAGGTCCCAAGCCTCTTCCACCTCCAACATCTGCGAAAAAAACCAAGCTTATACTTAAATTTAATAAGGGAACTCCAAAAATTGCTCTGAAAAAACCATCAAACGCAATAAATGGAGAACTTAAATCACCAAAAACATTATTACCAAAATTAGAAGGCCCAAAACCACATCCAAATGCCCCATCAGGTCCTAGGAGGAAAATAACACCTCGAAAAAAAATTCCAAATAACAATAAAGAAGAAAGGAAAGGAAATAGTAGATCTGATGCTGGTGAACTGGAAATGGGAATGTTGCCTCCGTTATGGAGCCCTTCAGGAACGAGTGCAAAAACGTCGAGCAACGAATCATTATCTTGGAGTCATTTGGATGAGAAAAGCACGAATGAAGAAGGTCGCCTGGACCCTTGCACGATACGGTGCACAAAAGCCATGGGGTTGATCCCTACCCTTCAGTGCAGTATATGCTTATGTTTATATCATCCCGAGTGCTGCGATATGGAACCCATAACATCTTATCGTCCTGTACTGAAATATGTATGTAAGAACTGCCATACGAAAGCTGCAGAGTCGAAAAGCAGAGGACTAGTGAAGCACATAACACCGGCAAATGTAACGTGTGACAAAAGCCCACCTATTATATCGCCCAAACCCATTCATCCCGTATTGAATTCTCCCGCTTCTCCTTCCGCCCCCGCATCAAGTAGATTGCCGCAGTTAATTAGACCAAAGATACCAACGTCAAAATCTAACGTTTGTGGGGGGTCGACTTGGCTTCCACCTACCAACACAGTTTTCCGATCTCCTGCAGTAACCAAAAGTGGTCAAGTAAAATCAGAAGAAATGTCAACTCCTCTTCAAGCGATCGTTAACATGAATACTAAACGATATATTGTTGTACCGAAGCACAATATTCTCTCACTTGCGTCTAACCAGAATTTATCTCCCACAAAAGCCGATCCTGCTCAGAGTACAACTATTATTACCCCAACCCCAACTTCTACAATAATTCAAGGTCCGCCCTTGCAGAATAATCCATTCATTCAGCCCACTCCTAATTCACCTGGGGTTTTATTAGTACCTTATATGACTTGTGAAAGTATGTCCCCAGATACTGGCTCTCAACAATATTTAGTTGTAAATCCCACAGCCGGTTCGTCGGCGACTCCTGCTAGTCAACCGGACCTTCCTATTGGGAGCGAAACTCCTGATCATTTTACGAAAAGAATGGAAAAGAATTGCAAAAGGCACTCCTCGGACGGTGTCGACGAGTCAATGCAAAAATTCATGCGAAATATCTGCATTGGTTACACGGCACTTCTCAATGTATTCCAATACCTCAAGGTACAAGAATTGTTAAGGGCCGGAAGAGTGTGTCGTCTGTGGCGAGATATCGCAGGTCATTCGTCTTTGTGGCGAACAGTGCGAATGAAAAATTCACAAGTCTCAGATTGGAAAGGTTTCACGGATTCCCTGTCACGGCATGGAACGAAGCACCTCGATCTGCGGAAAATGTTGGTTTCCCTTGATGAAACCGAAGAAATGTGGATGACGTTTTCGAAAAACATTTCAAGTGTTAAATGCTTAGAACGTTTAGATATGTGCCGAAGTTCGGTGAATGTTATTGAACAGATAATTGATGCTTGTCCACATTTGTTGGTTTTCAATGCTCAGATGATAGGTGTAAAAGATCAAACAACTCATCAGAAAATATCATTAGAAAATTTATCGAAAATGAAAAGCTTAAAAGAGCTACGAATGAAAAGTTTTTTCGGACTTCATCTAATGGGTTCCCTTAAATCCCTCACAGATTTGTCAGAGACACTTACGACTCTCTCTCTCACTTCGGTTAAGAATTTGGGTTCGGTCGAGGTTCATTACATAGGGAAGCTTCATCTTCTCGAAGCTCTCGAATTGGGGGAATGTTCTGACTTGCCAGAAAATTTCCCAACTCTTGTCATTGCAAAGCTTCTCAAATTAAAAAGAATAAGATTGGAGAAAGGTCCATGGAAGTGTTCGACAAATGAAATGCTTTACGAAATGAGCAAGTTAAATGATTTAATGCAACTGGAATTAATTAATTTCGATATTAGACCAGGATTTGACGAAGCTCTTGCGTCTTGTGCAAACATTAAACGTCTTTTGCTGATACCTACTTATGTTACTCAATCCGCCACGACAAATAATATAATTCTTTGCGGGGCTTTTAAACTTTGGAAAACTTTGACTCATTTTGTTTGGGTTGTCACAATGGAGCTTTTGAAGGTTACGGAATTATTTGTCGATCAATGCGAAGGAAAAGGATCGAAAAAAAGTGGGGGCAATAGTGTTCCGGTTTTAAAGCCAGTTCCTTTACCCGAAGTGCGTAAAGCTGACGATCCCGTTTTGTCGAAGGAAGAAAACGTGGCTGGCTCGAAAAATCCAACTCCAATCACCGTTATACCTATTGATGAACTTTTTGAAATGCTAAAAGAAGCATTGCCCAATACACGCGTTAAACTTCTCAAAATTCCTTTCCAAAATACTTGGCGACAGAGCATCACCGAAGGTAGTTCTACTTCCGTGTAA
Protein Sequence
MIDAKADKSNTQEISELKKEMGDEEETVETEKDGLTEDDFDTNKFFKIEDGEEEFKGFHFISGFEIQEVMKTLSEKEEDDLQNLEKAQNHILHSPPSKRRRGEYEESDLSSHCSSPALSISSQLSAFSFSKRSMTGSPASRGSRKSNVDLSNPKYLVPFEFGWRREVVTRGITSREDGISKDVYYFHPCGKKLRSLREVSEKLTPGVTIENFTFYKEPLGADPKFETIRNARCQGYSPSESMTHKAASNKNKVEKSPVKTPPPPPPPPAPKETPKGTIPLKNFVKTPKEPGPKPLPPPTSAKKTKLILKFNKGTPKIALKKPSNAINGELKSPKTLLPKLEGPKPHPNAPSGPRRKITPRKKIPNNNKEERKGNSRSDAGELEMGMLPPLWSPSGTSAKTSSNESLSWSHLDEKSTNEEGRLDPCTIRCTKAMGLIPTLQCSICLCLYHPECCDMEPITSYRPVLKYVCKNCHTKAAESKSRGLVKHITPANVTCDKSPPIISPKPIHPVLNSPASPSAPASSRLPQLIRPKIPTSKSNVCGGSTWLPPTNTVFRSPAVTKSGQVKSEEMSTPLQAIVNMNTKRYIVVPKHNILSLASNQNLSPTKADPAQSTTIITPTPTSTIIQGPPLQNNPFIQPTPNSPGVLLVPYMTCESMSPDTGSQQYLVVNPTAGSSATPASQPDLPIGSETPDHFTKRMEKNCKRHSSDGVDESMQKFMRNICIGYTALLNVFQYLKVQELLRAGRVCRLWRDIAGHSSLWRTVRMKNSQVSDWKGFTDSLSRHGTKHLDLRKMLVSLDETEEMWMTFSKNISSVKCLERLDMCRSSVNVIEQIIDACPHLLVFNAQMIGVKDQTTHQKISLENLSKMKSLKELRMKSFFGLHLMGSLKSLTDLSETLTTLSLTSVKNLGSVEVHYIGKLHLLEALELGECSDLPENFPTLVIAKLLKLKRIRLEKGPWKCSTNEMLYEMSKLNDLMQLELINFDIRPGFDEALASCANIKRLLLIPTYVTQSATTNNIILCGAFKLWKTLTHFVWVVTMELLKVTELFVDQCEGKGSKKSGGNSVPVLKPVPLPEVRKADDPVLSKEENVAGSKNPTPITVIPIDELFEMLKEALPNTRVKLLKIPFQNTWRQSITEGSSTSV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01308695;
90% Identity
iTF_01308695;
80% Identity
iTF_01308695;