Rfer008702.1
Basic Information
- Insect
- Rhynchophorus ferrugineus
- Gene Symbol
- -
- Assembly
- GCA_014462685.1
- Location
- JAACXV010014113.1:182251-185129[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.27 3e+03 -1.3 0.1 19 31 94 106 87 126 0.73 2 10 0.45 5.1e+03 -2.0 0.2 17 43 121 147 113 150 0.79 3 10 0.014 1.6e+02 2.9 0.0 17 46 148 178 140 183 0.82 4 10 0.027 3.1e+02 1.9 0.0 21 44 209 232 201 240 0.83 5 10 0.0044 50 4.5 0.3 24 44 244 264 238 272 0.87 6 10 0.0019 21 5.6 0.0 24 53 280 308 266 309 0.84 7 10 0.00019 2.1 8.8 0.1 23 45 335 357 330 364 0.88 8 10 0.046 5.3e+02 1.2 0.0 21 43 361 383 357 389 0.89 9 10 0.0026 30 5.2 0.3 21 46 389 414 382 417 0.83 10 10 0.00011 1.3 9.6 0.2 13 48 410 445 403 451 0.87
Sequence Information
- Coding Sequence
- atggaaaGTGAAACTAATGATTCGTCTTCTAGCAACATGGATGACGCTAACTCTAATGAGAAtgtaattaaaacagaaaatgaatCAGATTCTGATTACTTACAGGAAGATATGCCTGATTATGTGGGTTTGGAGGATATTGAGGAAACAAAAAGGAAAGAAACTGAAAAGCAAAATAGTGGTGATAATGAAATagtaaatgaatttttaaaacattccctgtatattaatcaagatgagaataaagatGTGGATGATGATGAAGAAAATAGTATGTCCTCATCAAATGAAGAAGatacaaaatgtaatatttgcAAGCAAACCTTCTTGGATAGAGAAGATTACAATAGTCATTGTCAATCAAGAAGAATAGATGATAGAAAatATTGTTGTTGCAATTGCCAAAAGATTTTTCGTGATAATAGTCAGTTGAAGGTACACTCTAGGAAGCATACTGGTGAGAAACCTTTTGGTTGCCTAATctgtggaaaaaagtttactGTTAATGGGAATTTGAATAAACATATGAGAATTCATACAGGAGAAAAAAGGTTTGGGTGTGCAAGTTGTGGTAAAAAATTCACACAGCTTGCTCACTTGAAAGACCACAGCAGCATCCATTCAGGAGAAAAGCCATTTAAATGTGATCACTGCCCAGGAGTTTTTAAAACTAAAGCTAGATTAAAGAAGCACATTAGGAATCACACAGATCCAAATATAAGTAAAAGAACTATACCATGCCCTCAATGTAAAATGGCAATGAGGAATAAAAGACAACTAGCAGCACATTTGGTTACTCATGATAGTGAAGATAAAATTACTGATGAACAAACAGGGCCTTTTATATGCAAATTGTGTGGTAAAAAATTTGGTAAGAGTTCAAATTTGAAAAGGCATGAGAAACATCATTTAGCAGAGAAAGGTTATCCCTGTAGTTTTTGCGATAAATCATTTATTATGGCTAGTCGCCTAAAAAGGCACATGGATACTCACACagGATTTAAGCCATATACTTGTGAACTTTGTAATCGTGCTTTCCCATCATCTCAGAACCTGAAAAGACATATCATGACCCACACAGGAGAAAAACCATTTGAatgtacagTATGTAACAGAAGTTTTCTCACTTTGGAAAATCTTAACAGACATAAAAGGACCCATACTGGAGAGAAACCATTTACTTGTAAAATATGTAGCAAACATTTTGCTCACagcacaACTGTGAAGGAACACATGAGAACAGTTCATACGTCGGAGAAACCGTACACCTGCCTCTGGTGCAGTAAACAATTTGCTATCAGTAGAGTTATGTACCGCCATGTTAAAGAAAAACATCCAGAACATTTTCAAAAGTTTAAGGCAGAGAATCATGTCGCGCCCAACCTTAAGAAAGCGAGAGCCAAATTTAGCCAAATAGATGGCTTTTCTATGAATGAAACGGGTCAGAATAATGTGGACAGCATAAAAAGTGAACCCCTTGACGGCTATGATGCCCTGGAATATTCGTCAAGGGGGCTGttagaacaaattaaaactGAGCCGCGTTCTGAAGAGGATGCAGAACCTAAGAACATAGAAAAAGTTGTGATAAAGCATGAAATCAATGATGATAATGTGAAACGAGAACTGGAAATTAATCTGCCTCTCATAAATAATAACGTTGCCGTGAAAAAAGAAGAAACTGATTGGAGCTAA
- Protein Sequence
- MESETNDSSSSNMDDANSNENVIKTENESDSDYLQEDMPDYVGLEDIEETKRKETEKQNSGDNEIVNEFLKHSLYINQDENKDVDDDEENSMSSSNEEDTKCNICKQTFLDREDYNSHCQSRRIDDRKYCCCNCQKIFRDNSQLKVHSRKHTGEKPFGCLICGKKFTVNGNLNKHMRIHTGEKRFGCASCGKKFTQLAHLKDHSSIHSGEKPFKCDHCPGVFKTKARLKKHIRNHTDPNISKRTIPCPQCKMAMRNKRQLAAHLVTHDSEDKITDEQTGPFICKLCGKKFGKSSNLKRHEKHHLAEKGYPCSFCDKSFIMASRLKRHMDTHTGFKPYTCELCNRAFPSSQNLKRHIMTHTGEKPFECTVCNRSFLTLENLNRHKRTHTGEKPFTCKICSKHFAHSTTVKEHMRTVHTSEKPYTCLWCSKQFAISRVMYRHVKEKHPEHFQKFKAENHVAPNLKKARAKFSQIDGFSMNETGQNNVDSIKSEPLDGYDALEYSSRGLLEQIKTEPRSEEDAEPKNIEKVVIKHEINDDNVKRELEINLPLINNNVAVKKEETDWS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01307424;
- 90% Identity
- iTF_01307424;
- 80% Identity
- iTF_01307424;