Basic Information

Insect: Rhynchophorus ferrugineus
Gene Symbol: -
Assembly: GCA_014462685.1
Location: JAACXV010014113.1:182251-185129[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.6 47 5.1 2.1 2 19 101 118 100 120 0.92

2 12 0.00039 0.031 15.1 7.4 1 23 129 151 129 151 0.97

3 12 2.5e-07 2e-05 25.1 0.5 3 23 159 179 157 179 0.98

4 12 0.00066 0.051 14.4 1.3 3 23 187 207 185 207 0.94

5 12 9.5e-06 0.00074 20.2 2.7 1 23 213 235 213 235 0.98

6 12 0.0078 0.61 11.0 0.1 2 23 246 267 245 267 0.96

7 12 9.4e-06 0.00074 20.2 4.1 1 23 281 303 281 303 0.96

8 12 2.1e-06 0.00016 22.2 0.8 1 23 309 331 309 331 0.98

9 12 1.2e-07 9.8e-06 26.1 0.6 1 23 337 359 337 359 0.99

10 12 1.2e-05 0.00097 19.8 1.8 1 23 365 387 365 387 0.98

11 12 3.9e-05 0.0031 18.2 5.0 1 23 393 416 393 416 0.98

12 12 0.34 27 5.8 0.7 1 23 422 445 422 445 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.6	47	5.1	2.1	2	19	101	118	100	120	0.92
2	12	0.00039	0.031	15.1	7.4	1	23	129	151	129	151	0.97
3	12	2.5e-07	2e-05	25.1	0.5	3	23	159	179	157	179	0.98
4	12	0.00066	0.051	14.4	1.3	3	23	187	207	185	207	0.94
5	12	9.5e-06	0.00074	20.2	2.7	1	23	213	235	213	235	0.98
6	12	0.0078	0.61	11.0	0.1	2	23	246	267	245	267	0.96
7	12	9.4e-06	0.00074	20.2	4.1	1	23	281	303	281	303	0.96
8	12	2.1e-06	0.00016	22.2	0.8	1	23	309	331	309	331	0.98
9	12	1.2e-07	9.8e-06	26.1	0.6	1	23	337	359	337	359	0.99
10	12	1.2e-05	0.00097	19.8	1.8	1	23	365	387	365	387	0.98
11	12	3.9e-05	0.0031	18.2	5.0	1	23	393	416	393	416	0.98
12	12	0.34	27	5.8	0.7	1	23	422	445	422	445	0.92

Sequence Information

Coding Sequence: atggaaaGTGAAACTAATGATTCGTCTTCTAGCAACATGGATGACGCTAACTCTAATGAGAAtgtaattaaaacagaaaatgaatCAGATTCTGATTACTTACAGGAAGATATGCCTGATTATGTGGGTTTGGAGGATATTGAGGAAACAAAAAGGAAAGAAACTGAAAAGCAAAATAGTGGTGATAATGAAATagtaaatgaatttttaaaacattccctgtatattaatcaagatgagaataaagatGTGGATGATGATGAAGAAAATAGTATGTCCTCATCAAATGAAGAAGatacaaaatgtaatatttgcAAGCAAACCTTCTTGGATAGAGAAGATTACAATAGTCATTGTCAATCAAGAAGAATAGATGATAGAAAatATTGTTGTTGCAATTGCCAAAAGATTTTTCGTGATAATAGTCAGTTGAAGGTACACTCTAGGAAGCATACTGGTGAGAAACCTTTTGGTTGCCTAATctgtggaaaaaagtttactGTTAATGGGAATTTGAATAAACATATGAGAATTCATACAGGAGAAAAAAGGTTTGGGTGTGCAAGTTGTGGTAAAAAATTCACACAGCTTGCTCACTTGAAAGACCACAGCAGCATCCATTCAGGAGAAAAGCCATTTAAATGTGATCACTGCCCAGGAGTTTTTAAAACTAAAGCTAGATTAAAGAAGCACATTAGGAATCACACAGATCCAAATATAAGTAAAAGAACTATACCATGCCCTCAATGTAAAATGGCAATGAGGAATAAAAGACAACTAGCAGCACATTTGGTTACTCATGATAGTGAAGATAAAATTACTGATGAACAAACAGGGCCTTTTATATGCAAATTGTGTGGTAAAAAATTTGGTAAGAGTTCAAATTTGAAAAGGCATGAGAAACATCATTTAGCAGAGAAAGGTTATCCCTGTAGTTTTTGCGATAAATCATTTATTATGGCTAGTCGCCTAAAAAGGCACATGGATACTCACACagGATTTAAGCCATATACTTGTGAACTTTGTAATCGTGCTTTCCCATCATCTCAGAACCTGAAAAGACATATCATGACCCACACAGGAGAAAAACCATTTGAatgtacagTATGTAACAGAAGTTTTCTCACTTTGGAAAATCTTAACAGACATAAAAGGACCCATACTGGAGAGAAACCATTTACTTGTAAAATATGTAGCAAACATTTTGCTCACagcacaACTGTGAAGGAACACATGAGAACAGTTCATACGTCGGAGAAACCGTACACCTGCCTCTGGTGCAGTAAACAATTTGCTATCAGTAGAGTTATGTACCGCCATGTTAAAGAAAAACATCCAGAACATTTTCAAAAGTTTAAGGCAGAGAATCATGTCGCGCCCAACCTTAAGAAAGCGAGAGCCAAATTTAGCCAAATAGATGGCTTTTCTATGAATGAAACGGGTCAGAATAATGTGGACAGCATAAAAAGTGAACCCCTTGACGGCTATGATGCCCTGGAATATTCGTCAAGGGGGCTGttagaacaaattaaaactGAGCCGCGTTCTGAAGAGGATGCAGAACCTAAGAACATAGAAAAAGTTGTGATAAAGCATGAAATCAATGATGATAATGTGAAACGAGAACTGGAAATTAATCTGCCTCTCATAAATAATAACGTTGCCGTGAAAAAAGAAGAAACTGATTGGAGCTAA
Protein Sequence: MESETNDSSSSNMDDANSNENVIKTENESDSDYLQEDMPDYVGLEDIEETKRKETEKQNSGDNEIVNEFLKHSLYINQDENKDVDDDEENSMSSSNEEDTKCNICKQTFLDREDYNSHCQSRRIDDRKYCCCNCQKIFRDNSQLKVHSRKHTGEKPFGCLICGKKFTVNGNLNKHMRIHTGEKRFGCASCGKKFTQLAHLKDHSSIHSGEKPFKCDHCPGVFKTKARLKKHIRNHTDPNISKRTIPCPQCKMAMRNKRQLAAHLVTHDSEDKITDEQTGPFICKLCGKKFGKSSNLKRHEKHHLAEKGYPCSFCDKSFIMASRLKRHMDTHTGFKPYTCELCNRAFPSSQNLKRHIMTHTGEKPFECTVCNRSFLTLENLNRHKRTHTGEKPFTCKICSKHFAHSTTVKEHMRTVHTSEKPYTCLWCSKQFAISRVMYRHVKEKHPEHFQKFKAENHVAPNLKKARAKFSQIDGFSMNETGQNNVDSIKSEPLDGYDALEYSSRGLLEQIKTEPRSEEDAEPKNIEKVVIKHEINDDNVKRELEINLPLINNNVAVKKEETDWS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01307692;
90% Identity: iTF_01307692;
80% Identity: iTF_01307692;