Rfer021276.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhynchophorus ferrugineus
Gene Symbol
PAXBP1
Assembly
GCA_014462685.1
Location
JAACXV010000379.1:147391-151037[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2e-28 2.3e-24 86.8 0.2 4 272 501 707 498 709 0.91

Sequence Information

Coding Sequence
atgtctTTATTTAGAAAACCAAAAAAGAATATAGTTCAACGAAGAGTATTTACTGAAAATGACGATGAAGATGACCATGAACCGATTGATATACCAGAACAAACACAATtggaaaagaaaattaaaaaaaaagataaggaAAAGAAACCTCGACAAACACTACTAAGTTTTGAAACTGAAGAAGAAGGTGAAGTATTTCAGatTAAAAAATCATCTCATAATAAGAAAGTAATGCGAAtgtttgaaaaagaaaagaagaaaaaagaaagagagAGGGTTGAAAAGGATGAACAAAAGGTGAAAGAAAAAACTGAAGTAATGActgatgatataattttagtcataAATGAAAACCATAAAAAACCACCTACTCCACCGCCACCTATACTAAGTGGAAGAGATGCTTTATGCGCTGGAAAAAATGATTTATCATCAGATGAAGATGAATCAACTTCAACAATACACCGATTTTCAAAACCAGACAATGTCAGGAAAGTTTTAGAATCTGGTGCTATTCCAGATGCTGCTATGATTCATGCAGCAAGAAAAAAACGACAGAGAGCTAGGGAAATGGGAGATTACATATCTGTTGAAGATGAAGAACCTGAAGATACTGGTCGCTTAATAAGAGATGATGACAATGAACATAGTGATGATGAAAGAATTGATATGGATGTAAATCTAATGAAACGTGATAAAGAAAGAAGAAGGGAGCAATTTTTAGCAGCACAAGATTCTGATCATGAACTTGATGAATGGGAAGACCAACAGATTCGAAAAGGTGTTACAggtgcTGCTATGACTGTAGCTCAGGAAATGATGCAGGAATTTCAATCAGATCAATTACAAAACCTGTCGAAACAATCAACACCATTAATTAATCCAGAAATTCCCAGGACTCCAGAAATGATAGCAGAAAAACTCCgtgaacattttaaagaaatatgtgaTTCTAGAGATCAAAACTTACAAAAATTGAGGACTATTGAGAGTGATATTGAACAGACTTCAGAAGAACTGGaggatttaaaaattaaagctCCTGAAGCTGCagaaaaatttagattttacCAGGAATTGAGAGGATACATTACGGATTTAGTTGAGTGTTTAGATGAAAAAATAAGTTCAATTACCATTTTGGAGCAAAGAGCTTTAGATTTAATGGCGTCGAAATCAAAGTGGTTGATTGAGAGAAGAAGACAGGATGTCAGAGATCAAACAGAAGAAGCTACTGGTAAAAGTTTAATGAAAAAAGGGCCTGAAGATGAAGAAAAGGTGAGAAGGGCAGCAGAAAGAGAAGGTAGAAGGACCAGACGTCGAAGAGCGAGAGAATTGCCAAATACTCAGAATATTGCAAAACATGTGGAGGGAATGTCCAGTGATGATGAGATGTCACAACAGGATATGCTATTCTTTGATAAAGAGAAACAAGAAATTGAACAGGAACTTCaagaaatatttgaagatgTTGTTGATGATTATTCATCTACTGCTAACATACTTATTAGATTTGAGCATTGGAGAAGTAAGGATCTATCAGCGTATAATGATGCATATGCAACTCTATGTTTGCCGAAAGTAGTAAGCCCTCTCAtaagattaaatttaatattttgggaTCCTCTAAATGAAACTACAGATATTGAAAAGACAGAGTGGTACAGAACATTAGCATTATATGGGTTACATGATAATGAATCTGAACACAGCTTATCAAAAGATCCAGATATTAATCTGTTACCAACAGTCATTGAAAAAGTTTTAGTTCCAAAATTGTCACAATTAATTGATAGATGTTGGGATCCCGTTTCAAGCTCACAAACCTTAAGATTAGTAGGTACTGTCGGCAGGTTCATTAGAAAATATCCCACTCTAGGACCAAGCAGTAAAAGCCTGGTTAACCTTTTTAATGGTATTCTGCATAAGATGCAAGTAGCCTTGGAGAATGATGTCTTTATTCCTATAACTCCTAAGTTGGCTGATAGTAAAAATCAGTTTTTCCAGAGGCAATTTGCAAGTGgattgaaattgttaaaaaatattactagttGGCAGGGTGTTATAAATGATAGCAAATTGAAAGAATTAGCTTTGAATTCGTTATTGAATAGGTACTTATTGAGTGCATTGAAATTTTGTGCTCTCACAGACGCTGTACAAAAAGTACGACTAATTAGTCAAGTACTGCCTAGAATATGGTTGCAAGAGAGTATACCTgagtttaaaatgtttaacacgacCGTCAACAATTTGCATCAACAACTGGATAAGAACAATCCTTTGCATCTGGAATCTATTGGCATTTTAAATGGCATCATTAAAACTTTACGATCAGTTATTTCCgatcattaa
Protein Sequence
MSLFRKPKKNIVQRRVFTENDDEDDHEPIDIPEQTQLEKKIKKKDKEKKPRQTLLSFETEEEGEVFQIKKSSHNKKVMRMFEKEKKKKERERVEKDEQKVKEKTEVMTDDIILVINENHKKPPTPPPPILSGRDALCAGKNDLSSDEDESTSTIHRFSKPDNVRKVLESGAIPDAAMIHAARKKRQRAREMGDYISVEDEEPEDTGRLIRDDDNEHSDDERIDMDVNLMKRDKERRREQFLAAQDSDHELDEWEDQQIRKGVTGAAMTVAQEMMQEFQSDQLQNLSKQSTPLINPEIPRTPEMIAEKLREHFKEICDSRDQNLQKLRTIESDIEQTSEELEDLKIKAPEAAEKFRFYQELRGYITDLVECLDEKISSITILEQRALDLMASKSKWLIERRRQDVRDQTEEATGKSLMKKGPEDEEKVRRAAEREGRRTRRRRARELPNTQNIAKHVEGMSSDDEMSQQDMLFFDKEKQEIEQELQEIFEDVVDDYSSTANILIRFEHWRSKDLSAYNDAYATLCLPKVVSPLIRLNLIFWDPLNETTDIEKTEWYRTLALYGLHDNESEHSLSKDPDINLLPTVIEKVLVPKLSQLIDRCWDPVSSSQTLRLVGTVGRFIRKYPTLGPSSKSLVNLFNGILHKMQVALENDVFIPITPKLADSKNQFFQRQFASGLKLLKNITSWQGVINDSKLKELALNSLLNRYLLSALKFCALTDAVQKVRLISQVLPRIWLQESIPEFKMFNTTVNNLHQQLDKNNPLHLESIGILNGIIKTLRSVISDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01187849;
90% Identity
iTF_00376337;
80% Identity
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