Rpad021992.1
Basic Information
- Insect
- Rhopalosiphum padi
- Gene Symbol
- -
- Assembly
- None
- Location
- scf7180000010731.277378:5183-19548[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1e-12 9.1e-09 35.4 0.1 9 72 149 215 144 218 0.87 2 2 3.8 1.1e+04 -3.4 0.0 59 76 303 320 282 321 0.76
Sequence Information
- Coding Sequence
- ATGTTTGAATTCGACAACGAAACCAATAATCTTTTAAACCTAGAAGGAAATTTTATTGGATTTGATATTGATGATGAAGTATTGATAAAAATTAAAAACAAGAAAAAATTATTAAAAATGGAACTTAGTAAAGAAACATGTGAGCCTATGGAAATAGACAAGCCAACTGACAGTCCATCCATTGTTTATAATAATCATGTTAATAAAAAGAAACAATCTAAATCAAGTATATCAACACTAGAACCTAATGATATAAAGAATAATTGGAGTAATAAGAGGCATAAGAATGACAACACAAGCAGTGATACTTTAGAATCTTTGAAATTACATGCGGATTCTTTAGAAATTACTACTCCTACATTCAACTTAACTTCTTCTAACAGTAGAACGTGCCGTAGTACAGGCAAAAAAATTAAGTCTGATATCAATGATGCTATTTTTAAACTCCCATTTGAGCATGGATGGAAACGAGAATACATTGTTTACAAAAAAACTTTTCTTAATCGGGAAAATAGAAGTGGTGATGTATACTATTATTCTCCAAATAACCAAAAACTACGAACATTACAAGAAATTCAGGAACAATTGAATATCTCATCTGATAAAACCTCTCTTACTATAGACTGTTTTACTTTTTTAAAACAACCAATTGGCATGAATGATAGATCAAAAGAACTGATCAGAAATGCACATTTAAAATTATTTAAGGAAAACACTTCTGTTGGTGAACTGTCAGATGATAAAAACAAAAAATCTGCTGGTAAAATGAAAATTGTTTTTAAAACTGCGAAGACTTCCTCAAGAACAAGATCCAAAAAAGGGAATTCAGAATCAATGAATACATCTTCATCCACACCTCAATACATATCTGAAGACCTCCAAGCTATTCAATCTAGTATATCGACAAAAGTTTCTCCTAAACTTGAGAACATTGATATAAATACTACAATCATGAAAAGACGGTTGCCAGCATCAGATAGGAAAATCATCATGCAGACTCGTTGTGGTATGCGGTGCTCTAATATTGATGAACCTTGCTCTTTAATGTGTACTCGTTGTCTACTACACTATCATCCAGCATGTGTCAACATGCTTGTTCATTTAAAAATTGTTGATTATGTATGTTTACACTGTCGAATTTTAATGAAACAAAGAGATACTCGTGTACAGTCATCTCATACTGTGGTTGTTAGTGCTACTGAACCGGAGAAACTATGCATTGAACCGATTTGTATAAGACAAGTTCATCAAGCATCAAGTATGCCAATTACTAAAATTGAAGAACCCTATTATAAAATTGATGAATATAGAGATGGAAATGTATCCAAAACTAAAATGGTTGATGGTAGTTTTCACAAACAGTATGTTTATGAAATGAAACAAAAACGAGGACCTAGTTTAATAACTTGTGTTATTCAAGAGCCCAACAATTTGGAAGAGAATTCTGAAATAAATGGTTCACTTAAAGAAATGTCAACTCCTTTCGCATCCCTGCAAACATTAAACTGCATGGTTAAAACATTGGGACACGTTTTTAAATATTTAAATACACGTGAGCTTTTATCCGCTTCTAGAGTATGTACCGCCTGGAATAAAATTGCAATGAACAAGTCATTATGGCAACATTGTCGCTTAAAAAATTCTATGGTCTATGACTGGGAAAGGTTTGTAGACTTAATTGATAAACAAAAAACTGACACGTTAGATACTAGACAAATGTTGATTCCTGTAAAAGTTGATGAATTAAAAAAATTTTGGTTGCTTTTTTCCAAAGCAATGAAAAGAGCACAGAAGTTACAATTTATTGAATTGTATAGATGTCCTACCCATGTAGTTGAAGATATTATTCACTCATTACCTCAGCTTGAAGTACTCAATGCAACTTCAATAAAAAATCCAAATGTAACCAAAGAGGCAAAAAATCCCCATGTTTTTATGGTCCTAAACTTAAATGATTTAGGCCAAATGACAAATCTCACTGAGTTAAGACTAAAAGGTTTGACTGGAATCAAATTAACTTCATTACCTTCATTTGAAAATTTAATAAATTTAAATAAATTTTCATTGACCTCCATAAATTCATTTCCAAAAGATATCTGTCAGAGTTTGGATACTATTACTGATAACATAGAGTTTTTGGAAATTGGTGATTGTGATTTCTTATCAAAAGATTTTGCTGTGTCACTAAAAAGATTTGTCAATTTGAAATCATTGAGATTGGAAAATTGTTACGGTAAATGGGAAAGTTATGTACAAGACGTTTTTACTGCTATTAGGGGTCTTGAAAAGCTCACTATTCTGGAATTGGTAAACATTGAATTCAGTAATTGTGTTGAAGATGAATTGGAAAAATGTGTTGGTATTAAAGCTTTACTGATTATTCCTGCTTACATGAGCAAATCTGCAACTATCAACTGCCACTTAATTGACTGCCTCGAGAAACTCTCCAAGACATTAACACACTTGGTTTGGGGATTGACTCTTGAATTACTCCGTGTTACTGACATTTTTATAACTCAATATCAGCAAAACCAGCATAGTATTGGTAATAATTTAGAATTATTCCATACCAAAGAAAAGACCAACTACATACCTATACTAAGGACAAGAAAACCCAGACAGCGACCAGGAGAAGAGCCTGCTCCTGAAAAGGACAAGAATAAAAACATATCAGATGACGTTCATTTACTTTCAGTTCCTGTTCTAGAGAAATTGTTAGATACAATGATGCCGGATGCTAAAACTAGGGTAATTAAGGTTCCCTTTTCAAAAACAGTTAGAGTTTATTTAAGTGAACAGTTTAATTATCTTTGA
- Protein Sequence
- MFEFDNETNNLLNLEGNFIGFDIDDEVLIKIKNKKKLLKMELSKETCEPMEIDKPTDSPSIVYNNHVNKKKQSKSSISTLEPNDIKNNWSNKRHKNDNTSSDTLESLKLHADSLEITTPTFNLTSSNSRTCRSTGKKIKSDINDAIFKLPFEHGWKREYIVYKKTFLNRENRSGDVYYYSPNNQKLRTLQEIQEQLNISSDKTSLTIDCFTFLKQPIGMNDRSKELIRNAHLKLFKENTSVGELSDDKNKKSAGKMKIVFKTAKTSSRTRSKKGNSESMNTSSSTPQYISEDLQAIQSSISTKVSPKLENIDINTTIMKRRLPASDRKIIMQTRCGMRCSNIDEPCSLMCTRCLLHYHPACVNMLVHLKIVDYVCLHCRILMKQRDTRVQSSHTVVVSATEPEKLCIEPICIRQVHQASSMPITKIEEPYYKIDEYRDGNVSKTKMVDGSFHKQYVYEMKQKRGPSLITCVIQEPNNLEENSEINGSLKEMSTPFASLQTLNCMVKTLGHVFKYLNTRELLSASRVCTAWNKIAMNKSLWQHCRLKNSMVYDWERFVDLIDKQKTDTLDTRQMLIPVKVDELKKFWLLFSKAMKRAQKLQFIELYRCPTHVVEDIIHSLPQLEVLNATSIKNPNVTKEAKNPHVFMVLNLNDLGQMTNLTELRLKGLTGIKLTSLPSFENLINLNKFSLTSINSFPKDICQSLDTITDNIEFLEIGDCDFLSKDFAVSLKRFVNLKSLRLENCYGKWESYVQDVFTAIRGLEKLTILELVNIEFSNCVEDELEKCVGIKALLIIPAYMSKSATINCHLIDCLEKLSKTLTHLVWGLTLELLRVTDIFITQYQQNQHSIGNNLELFHTKEKTNYIPILRTRKPRQRPGEEPAPEKDKNKNISDDVHLLSVPVLEKLLDTMMPDAKTRVIKVPFSKTVRVYLSEQFNYL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01304191;
- 90% Identity
- -
- 80% Identity
- -