Rmai006689.1
Basic Information
- Insect
- Rhopalosiphum maidis
- Gene Symbol
- -
- Assembly
- GCA_003676215.3
- Location
- NC:75222318-75234897[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7e-12 6.3e-09 34.7 0.1 9 72 171 237 166 240 0.88 2 2 3.7 3.3e+03 -2.8 0.0 53 76 311 342 301 343 0.69
Sequence Information
- Coding Sequence
- atgagTAACTTAAtggaaaCCAATAATCTTTTACTCCTAGAATCACATTTTATTGGATTTGATATTGATGATGAAGTattgataacaattaaaaataagaaaaaattattaaaaatggaaCTTAGTAAAGAAACATGTGAGCCTATGGAAGTAGACGAGCCAACTGAAAGTCCatatattgttcataataatcatattaataaaaagaaagaatCTAAATCAAGTAtatcaaCACTAGAACCTAATGATATAAAGAATAATTGGAGTAATAAGAGACATAAGAATGACAATACACACAGTGATACCTTGGAATCTTTGAAATTACATGTTTCGCCTTCTTTAGGTGAGTGgcagaaatgtataatacatgtatcaGAAAACATAAAATCTCTCAATTCATTCTCATTTGaaATTACTACTGCTACATTCAACTTAACTTCTTCTAACAGTACAACGCGTCGTAGTACAGGCAGAAAAATTAAGTCTGATATCAATGATGCTATTTTTAAACTCCCATTTGAGCAtggatGGAAACGagaatatattgtttacaaaaaaacttTTCTTAATCAGGAAAATAGAAGTGGtgatgtatactattattctcCTAGTAATCAAAAACTACGAACATTACAAGAAATTCAGGAACAATTGAATATCTCATCTGATAAAACTTCTCTTACTATAGactgttttacttttttaaaacaaccaATTGGCGTGAATGATAGATCAAAAGAACTGATCagaaatacacatttaaaattatttaaggaaaacACTTCTGTTGGTGAACTGTCagatgataaaaacaaaaaatctgCTGGTAAAATGAaagatgtttttaaaactacgAAGTCTTCCTCAAGATCAAGATCCAAAaaaggGAATTCAGAATCAATGAATACATCTTCATCCACACCTGAATACATATCTGAAAACTTCCAAGCTATTCAATCTAGTGTATCGACAAAAGTTTCTCCTAAACTTGAGaacattgatataaatacCACAATCATGAAAAGACGgTTGCCAGCATCAGATAGGAAAATCATCATGCAGACTCGTTGTGGTATGCGGTGCTCTAATATTGATGAACCTTGCTCTTTAATGTGTACTCGTTGTCTGTTACACTATCATCCAGGATGTGTCAACATGCatgatcatttaaaaattgttggttATGTATGTTTAcactgtcaaattataatgaaacaaaGAGATATTCGTGTACAGTCATCTCATACTGTGGTTGTTGGTGCTACTGAATCAGAAAAACTATGTGTTGAACCGATTCGTATAAGACAAGTTTATCAAACATCAAGTACGCcaatttctaaaattgaagaaccacattataaaattgatgaaattagaGATGGAAACGTATCCAAAACTAAAATGGTTGATGGTAGTTTTCACAAACAGTATGTTTATGCAATGATACAAAAACGAGGACCTAGTTTAATAACTTGTGTTATTCAAGAGCCCAAAAATTTGGAAgagAATTCTGAAATGAATGGttcatttaaagaaatttcaaCTCCTTTTGCATCCATGCAAACATTAAACTACATGGTTAAAGCATTGGGacacgtttttaaatatttaaatacacatgAGCTTTTATCCGCTTCTAGAGTATGTACCACCTGGAATAAAATTGCAATGAACAAGTCATTAtggcAAAATTgtcgtttaaaaaattctatggTCTATGACTGGGAAAGGTTTGTAGACTCTATTAATCAACAAAGAACTGATATGTTAGATACAAGACAAATGTTGATACCTGTAAAAgttgatgaaataaaaaaattttggttGCTTTTTTCCAAAGCAATGAAAAGAGCAcagaagttaaaatttattgaattgtatAGATGTCCTACCCATGTAGTTGAAGATATTATTCACTCATTACCTCAACTTGAAGTTCTCAATGCAACttcaataaaaaatccaAATGTAACAAAAGAGGCAAAAAATCCCCATGTTTTTATGGTCCTAAACTTAAATGATTTAGGCCAAATGACAAAGCTCACTGAATTAAGACTAAAAGGTTTGACtggaattaaattaacatcattaccatcatttgaaaatttaataaatttaaataaattttcattAACCTCTATAAATTCATTTCCAAAAGACATCTGTCAGAGTTTGGGTACTATAACTGACAACATAGAGTTTTTGGAAATTGGTGATTGCAATTTCTTATCAAAAGATTTTGCTGTGTCACTAAAAAGATTTGTCAATTTGAAATCGTTAAGATTGGAAAATTGTCACGGTAAATGGGAAAGTTATGCACAAGACGTTTTTACTGCTATTAGGGGTCTTGAAAAGCTCACTATTCTGGAATTGGTTAACATAGAATTCAGTAATTGTGTTGAAGATGAATTGGAAAAATGTGTTGGTATTAAAGCTTTACTGATTATTCCTGCTTACATGAGCAAatctGCAACTACCAACTGCCACTTGATTGATTGCCTCGAGAAACTCTCCAAGACATTAACACACTTGGTTTGGGGATTGACTCTTGAATTACTCCGTGTTACTGACTTATATATAACTCAATATCAACAAATCCAGCATAGTATtggtaataatttagaattatcCCATACCAAAGAAAAGACCAactacatacctatattaaggACAAGAAAACCCAGACAGCGACCAGAAGAGCCTGCTCCCGAAAAGGACAAGAATAAAGACATATCAGATGACGTTCATTTACTTTCAGTTCCTGTTCTAGAGAAATTGTTAGATACAATGATGCCAGATGCTAAAACTAGGGTAATTAAGGTTCCCTTTTCGAGAACAGTTAGAGTTTATTTGAGTGAACAGTTTAATTATCtttga
- Protein Sequence
- MSNLMETNNLLLLESHFIGFDIDDEVLITIKNKKKLLKMELSKETCEPMEVDEPTESPYIVHNNHINKKKESKSSISTLEPNDIKNNWSNKRHKNDNTHSDTLESLKLHVSPSLGEWQKCIIHVSENIKSLNSFSFEITTATFNLTSSNSTTRRSTGRKIKSDINDAIFKLPFEHGWKREYIVYKKTFLNQENRSGDVYYYSPSNQKLRTLQEIQEQLNISSDKTSLTIDCFTFLKQPIGVNDRSKELIRNTHLKLFKENTSVGELSDDKNKKSAGKMKDVFKTTKSSSRSRSKKGNSESMNTSSSTPEYISENFQAIQSSVSTKVSPKLENIDINTTIMKRRLPASDRKIIMQTRCGMRCSNIDEPCSLMCTRCLLHYHPGCVNMHDHLKIVGYVCLHCQIIMKQRDIRVQSSHTVVVGATESEKLCVEPIRIRQVYQTSSTPISKIEEPHYKIDEIRDGNVSKTKMVDGSFHKQYVYAMIQKRGPSLITCVIQEPKNLEENSEMNGSFKEISTPFASMQTLNYMVKALGHVFKYLNTHELLSASRVCTTWNKIAMNKSLWQNCRLKNSMVYDWERFVDSINQQRTDMLDTRQMLIPVKVDEIKKFWLLFSKAMKRAQKLKFIELYRCPTHVVEDIIHSLPQLEVLNATSIKNPNVTKEAKNPHVFMVLNLNDLGQMTKLTELRLKGLTGIKLTSLPSFENLINLNKFSLTSINSFPKDICQSLGTITDNIEFLEIGDCNFLSKDFAVSLKRFVNLKSLRLENCHGKWESYAQDVFTAIRGLEKLTILELVNIEFSNCVEDELEKCVGIKALLIIPAYMSKSATTNCHLIDCLEKLSKTLTHLVWGLTLELLRVTDLYITQYQQIQHSIGNNLELSHTKEKTNYIPILRTRKPRQRPEEPAPEKDKNKDISDDVHLLSVPVLEKLLDTMMPDAKTRVIKVPFSRTVRVYLSEQFNYL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01305557;
- 90% Identity
- -
- 80% Identity
- -