Rnym017660.1
Basic Information
- Insect
- Rhopalosiphum nymphaeae
- Gene Symbol
- pnr
- Assembly
- GCA_036289425.1
- Location
- JAZAQC010000024.1:2066010-2080397[-]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.9e-18 1.2e-14 54.0 3.2 1 34 174 206 174 208 0.97 2 2 1.4e-18 4.5e-15 55.4 5.7 1 35 233 266 233 267 0.98
Sequence Information
- Coding Sequence
- ATGTTCCAATGTTCGTCGACGAGCACGGTCGGCGCCGACGCAGGTGGTGTCGTCTCCAGTGACACGCAAAACGGTTACCGCGGTCATTACCATCACGATCGGATAGTATACGTTCCGTCGTCCAAGCCAAATATGTTCGGTCTTGCGCACCATCAGTACGGCgcaccaccgccgccgccgatgCCACCGCCACCACCGTCCACTGTCGGTGCCGCAGTCTCAGGCGCCACCGCGCACACGTGGCAGAACACACCGGCCCGGGCACAGAGTAGCAGTCACCACGTCTCCGCCGCCGCCGGTTCGCCGGCCAACAACAACGGTGGCGGAATTACCGCCGGTGGACACTCGAACGTAGTCCCAATGTCGTCGTCACCGTCATCGGCCACCCCGCCGTTTTACCAGAGCGCCGCAGCCGCAGCAGCCGCCGCAGCCATTATGTGGCCCAACCCCACGGCCACCGCATTCCAGGCCCATCACTACGACGCCGGAATGGATTTGCAGTTCGGAGACGGCCGGGAGTGCGTCAACTGCGGTGCAATCTCCACGCCACTGTGGCGTCGAGACGGCACTGGGCACTATCTGTGCAACGCTTGCGGGTTGTACCACAAAATGAACGGCATGAATAGACCGCTCGTCAAGCCTGCCAAAAGATTGGTCGCCTTCGAGACCGCATCCAACAGACGCCTTGGTCTGTCGTGTACGAATTGCGGGACCCGAATGACCACTTTGTGGAGGAGAAATAACGACGGCGAGCCCGTGTGCAACGCGTGCGGTCTGTATTACAAACTACACGGAGTCAATAGGCCGCTGACGATGAGAAAAGATGGTATCCAGACGAGGAAGAGGAAACCCAAGAAGCAGCCTTCGTcgtcttcttcttcttctaaCGGTTCGTCAAACGTGGAAAATCACAGACAATCCACTTCCGCGGCCATAGAtctattagtgaataAACATCATGCAGCGGTGGAAATCAAACACGAACCCAATTACGATTCGGCGGCAGCGGCTGCGGCTGCCGCTGCAGTGGCCGCGGAACACTTCCTCTTCCCCAGCACGGCGGGCAGCCATCATCATCCCCAGTTGGGTGGCTTCAGTTTTCCGCTCCCTCAGGCTCCGGTGCCGGCACATAACTACCAACACCTGTTGAACGGGCacgttaataataaactgATGGCGTCCTAG
- Protein Sequence
- MFQCSSTSTVGADAGGVVSSDTQNGYRGHYHHDRIVYVPSSKPNMFGLAHHQYGAPPPPPMPPPPPSTVGAAVSGATAHTWQNTPARAQSSSHHVSAAAGSPANNNGGGITAGGHSNVVPMSSSPSSATPPFYQSAAAAAAAAAIMWPNPTATAFQAHHYDAGMDLQFGDGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKPAKRLVAFETASNRRLGLSCTNCGTRMTTLWRRNNDGEPVCNACGLYYKLHGVNRPLTMRKDGIQTRKRKPKKQPSSSSSSSNGSSNVENHRQSTSAAIDLLVNKHHAAVEIKHEPNYDSAAAAAAAAAVAAEHFLFPSTAGSHHHPQLGGFSFPLPQAPVPAHNYQHLLNGHVNNKLMAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00134973;
- 90% Identity
- iTF_00973383; iTF_00942472; iTF_01306058; iTF_01329447; iTF_01033387; iTF_00019852; iTF_01304527; iTF_01168126;
- 80% Identity
- -