Msac002217.1
Basic Information
- Insect
- Melanaphis sacchari
- Gene Symbol
- pnr
- Assembly
- GCA_002803265.2
- Location
- NW:9943150-9960568[-]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5 1.2e+04 -5.0 0.9 3 9 3 9 3 9 0.84 2 3 2.4e-18 5.6e-15 54.0 3.2 1 34 173 205 173 207 0.97 3 3 8.8e-19 2e-15 55.4 5.7 1 35 232 265 232 266 0.98
Sequence Information
- Coding Sequence
- ATGTTCCAATGTTCGTCAACGAGTACAGTCGGCGCCAACGCAGGTGTCGTCTCCAGTGACACGCAAATCGGTTACCGCGGTCATTACCATCACGATCGGATAGTATACGTGCCGTCGTCCAAACCTAACATGTTCGGTCTTGCGCACCACCAGTACGGCGCACCACCACCGCCACCACCGCCGCTGCCACCGCCGTCCACTGTCGGCACCGCTGTGCCAGGCGCCACCACGCACACGTGGCAGAATACGCCAGCCCGGGCACAGAGTAGCAGTCACCACGTCTCTGCCGCCGCCGGTTCGCCGGCCAACAACAACGGTGGCGGGATTCCCGTCGGTGGACACCCGAACGTCGTCCCGATGTCGTCGTCACCGTCGACGGCCACCCCGCCGTTCTACCAgaacgccgccgccgccgcggcCGCCGCAGCCATTATGTGGCCCAATCCCACGGCCACCACATTCCAGGCCCATCACTACGACGCCGGAATGGATTTGCAGTTCGGAGATGGCCGAGAATGCGTCAACTGCGGTGCCATCTCCACACCGCTGTGGCGTCGCGATGGAACCGGGCACTATCTGTGCAACGCTTGCGGGTTATATCACAAGATGAACGGCATGAACAGACCACTTGTCAAGCCTGCCAAAAGATTGGTCGCCTTCGAGACCGCATCCAACAGACGTCTCGGTCTGTCGTGTACGAATTGTGGCACCCGAATGACCACCTTGTGGAGGAGAAACAATGACGGCGAGCCCGTGTGCAATGCGTGCGGTctgtattacaaattacacGGAGTCAACAGGCCACTAACAATGAGAAAGGATGGTATCCAGACGAGGAAAAGGAAACCCAAGAAGCAGCCTTCATCCTCATCCTCTTCTTCTAACGGCTCGTCAAACGTGGAGAACCACAGACAATCCACTTCTGCAGCTATAGATCTATTagtgaaTAAACATCATACAACGGTGGAAATCAAACACGAACACAATTACGATTCGGCGGCGGCTGCGGCTGCCGCTGCTGTGGCCGCAGAACATTTCCTTTTCACCGGAACAGCAGGCAGCCATCATCATCCCCAATTAAGCGGCTTCAGTTTTCCGCTTCCTCAAACTCCGGTACCGGCTCACAACTACCAACACCTGTTGAACGGGCACGTCAACAACAAATTGATGGCGTCCTAG
- Protein Sequence
- MFQCSSTSTVGANAGVVSSDTQIGYRGHYHHDRIVYVPSSKPNMFGLAHHQYGAPPPPPPPLPPPSTVGTAVPGATTHTWQNTPARAQSSSHHVSAAAGSPANNNGGGIPVGGHPNVVPMSSSPSTATPPFYQNAAAAAAAAAIMWPNPTATTFQAHHYDAGMDLQFGDGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKPAKRLVAFETASNRRLGLSCTNCGTRMTTLWRRNNDGEPVCNACGLYYKLHGVNRPLTMRKDGIQTRKRKPKKQPSSSSSSSNGSSNVENHRQSTSAAIDLLVNKHHTTVEIKHEHNYDSAAAAAAAAVAAEHFLFTGTAGSHHHPQLSGFSFPLPQTPVPAHNYQHLLNGHVNNKLMAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00134973;
- 90% Identity
- iTF_01305209;
- 80% Identity
- -