Basic Information

Insect: Rhopalosiphum nymphaeae
Gene Symbol: -
Assembly: GCA_036289425.1
Location: JAZAQC010000006.1:37097790-37105735[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00079 0.095 13.7 4.5 1 23 316 338 316 338 0.97

2 11 2.1e-05 0.0026 18.6 2.5 1 23 344 366 344 366 0.98

3 11 0.0002 0.024 15.6 0.5 1 23 372 395 372 395 0.97

4 11 0.049 5.8 8.1 3.4 1 21 401 421 401 423 0.95

5 11 0.00012 0.015 16.2 1.9 1 23 429 451 429 451 0.99

6 11 0.00017 0.02 15.8 1.4 1 23 457 479 457 479 0.98

7 11 0.0006 0.072 14.1 3.0 1 23 486 509 486 509 0.97

8 11 0.088 11 7.2 2.4 2 23 516 537 515 537 0.93

9 11 0.00018 0.022 15.7 0.8 1 23 543 565 543 565 0.99

10 11 0.00031 0.038 14.9 7.4 1 23 571 594 571 594 0.95

11 11 2e-06 0.00024 21.9 5.0 1 23 608 630 608 630 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00079	0.095	13.7	4.5	1	23	316	338	316	338	0.97
2	11	2.1e-05	0.0026	18.6	2.5	1	23	344	366	344	366	0.98
3	11	0.0002	0.024	15.6	0.5	1	23	372	395	372	395	0.97
4	11	0.049	5.8	8.1	3.4	1	21	401	421	401	423	0.95
5	11	0.00012	0.015	16.2	1.9	1	23	429	451	429	451	0.99
6	11	0.00017	0.02	15.8	1.4	1	23	457	479	457	479	0.98
7	11	0.0006	0.072	14.1	3.0	1	23	486	509	486	509	0.97
8	11	0.088	11	7.2	2.4	2	23	516	537	515	537	0.93
9	11	0.00018	0.022	15.7	0.8	1	23	543	565	543	565	0.99
10	11	0.00031	0.038	14.9	7.4	1	23	571	594	571	594	0.95
11	11	2e-06	0.00024	21.9	5.0	1	23	608	630	608	630	0.98

Sequence Information

Coding Sequence: atgaaaaaaaatggcgGCCGTTTTTTGACACCCATACCCGTGCCGCCACCGTCCCCGTCATCGGGCGTATGCGTGCCGTCCCCGAAACCGCTGCGCGCACCGACGATCGCCGTTTTTCGACGCCCGTCCGATTCCGAAAACCGTCGTCGCGTCGGCGTCATCTCAGCGGACGTCCGACACTATTCCGCAGCCGCCGTCGCGAACACTGCgtatttaattaacaagACTTCAAACATGTCTGAAAACGAAGGAACAACtattgtaTTAGATGGTGGATCATCTGCAAATACTATGACTATTGATGCGACTCATATAAAGTTGGAGGCTTCAACCTCTAGCACTGAAAATATAACCGATATACAAAATTACTTGGATTcatttaataaagaaattgaAGGAAATGAAGTAACACAAGTACAAACtgATGGGGACTCAGTAGAACATGCATATTTCATTGATCAAAAtgtccaatattattatcaaacaacTACAGGAGATGGCCAGATGGTTATGGTTGGaggacTTTCGGAACACGATGCACAAATGATGGCTGagacaaatgaaaataatatggacAATGTTACTCAAATTGTTCTGCCTAATGtacaagataaaattaaaaaagatatccctcaaattgttgctTTAGCAGATGGTAGTGGGTATCAAACAGTAACTCTGGTTCAAGCTGATACTGAAGCCAACAATTATGTACTTTATGTAGTCAAACAAAATGACAAAAATGATGAAACTCCAAACGTTATGGAGATGTCTCAAGAAGAACATGATCCTGATGATCCCGATGTTAGTAATGTATATGATTTCAATGATGCAGAAGATCCAACTCTACcaaaaaaacaagaaatagAAgatTCAGGTGAAGAAGATGACAAatctaaaatagttaaattagtaCCTAAAAAGTCACAAACTGTCACTCAAGCACATAtgtgtaattattgtaattacacTACTGGAAaaaggTATTTATTGTCTCGTCATATGAAGTCTCATTCTAAAGAACGTCCACATAAATGTACTGTTTGTGAACGTGGTTTCAAAACTCTAACTTCTTTGCAAAATCATGTGAATACACATACTGGAACAAAACCGTATCAATGTCGAAGTTGTCCAAGTGCTTTTACTACATCAGgAGAACTTGTTAGACATGTTCGGTATAAGCATACTCATGAAAAGCCacataaatgtacaatatgtgATTATGCTAGTGTAGAACTTAGCAAAATGAGAAATCATATGAGATGTCACACTGGTGAAAGACCATACcaatgtccCCATTGTACTTATGCAAGTCcagatacatttaaattaaagcgCCATTTGCGTATACACACTGGTGAGAAACCATACGAATGTGATATTTGCTTTTCTAGGTTTACCCAATCCAACAGTTTAAAAACACACAGATTAATCCATAgcgGTGAAAAGCCTGTATTTAAATGTGACCATTGTCCTGCTACTTGTGGGCGTAAAACTGATTTACGCATACATGTACAAAAGCTTCATACTTCTGATAAACCTATTAAGTGCAAACGATGTGGTGATGCATTTCCTGATCGTTACCAGTACAAGGTTCATTGTAAATCACATGAAGgagaaaaatgttataaatgtgaATTGTGTCCTTATGCTTCCATGTCTCAGCGTCATCTTGAAACTCATATGTTAATACATACAGATGAAAAACCATTCCATTGTAAACAATGTGATCagtcATTCagacaaaaacaattattacgcCGGCATCATAATTTGTATCATAATCCAGCATATATACCACCTCCACCACATGCCAAAACTCATCAGTGTAATACATGTCAACGATCATTTAGACATAAAGGAAATTTATTAAGACATATGGAAGTTCATATGCAAGAATCAACTGGAAATGATCGAAATACAGCAATAAAACAAAGACTAGagTATACGGATTCAGCTAATGAGGACGAATCTGAGGAAGATACAAGTATTCCAACAAGTGAAACTGGAGTTGTAGCAGTAGAAGGTGAAGATGGGCAGCAATATGTTGTGCTTGAAGTGATTCAACTTGATGGTCAAGATCAGATAGGTAGTTACACTGCCTCAAGTGTATCAATACAACAAGTTGACCAATCTTCCTcGCCAAGTCAAAAAGaccttactattttaaaaaccgCATCTTTATCAGACGTGAAAGAAGAATGTGGTGATGGtgttgaaaattgttttggtTTTGATGACGAAGATGATGAAGAAACGACAAACTCAGGtggttaa
Protein Sequence: MKKNGGRFLTPIPVPPPSPSSGVCVPSPKPLRAPTIAVFRRPSDSENRRRVGVISADVRHYSAAAVANTAYLINKTSNMSENEGTTIVLDGGSSANTMTIDATHIKLEASTSSTENITDIQNYLDSFNKEIEGNEVTQVQTDGDSVEHAYFIDQNVQYYYQTTTGDGQMVMVGGLSEHDAQMMAETNENNMDNVTQIVLPNVQDKIKKDIPQIVALADGSGYQTVTLVQADTEANNYVLYVVKQNDKNDETPNVMEMSQEEHDPDDPDVSNVYDFNDAEDPTLPKKQEIEDSGEEDDKSKIVKLVPKKSQTVTQAHMCNYCNYTTGKRYLLSRHMKSHSKERPHKCTVCERGFKTLTSLQNHVNTHTGTKPYQCRSCPSAFTTSGELVRHVRYKHTHEKPHKCTICDYASVELSKMRNHMRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDICFSRFTQSNSLKTHRLIHSGEKPVFKCDHCPATCGRKTDLRIHVQKLHTSDKPIKCKRCGDAFPDRYQYKVHCKSHEGEKCYKCELCPYASMSQRHLETHMLIHTDEKPFHCKQCDQSFRQKQLLRRHHNLYHNPAYIPPPPHAKTHQCNTCQRSFRHKGNLLRHMEVHMQESTGNDRNTAIKQRLEYTDSANEDESEEDTSIPTSETGVVAVEGEDGQQYVVLEVIQLDGQDQIGSYTASSVSIQQVDQSSSPSQKDLTILKTASLSDVKEECGDGVENCFGFDDEDDEETTNSGG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00184818;
90% Identity: iTF_00973249; iTF_01304387; iTF_00135628; iTF_01329231; iTF_00136343; iTF_01305887; iTF_00670441; iTF_00309014; iTF_01033240; iTF_01032378; iTF_01167931; iTF_01329243; iTF_01434364; iTF_00019646; iTF_00134782; iTF_00463551;
80% Identity: -