Basic Information

Insect: Schizaphis graminum
Gene Symbol: -
Assembly: GCA_003264975.1
Location: QEWZ01005269.1:1146-6551[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00086 0.083 13.9 4.5 1 23 238 260 238 260 0.97

2 11 4.1e-06 0.0004 21.2 3.0 1 23 266 288 266 288 0.98

3 11 0.0015 0.15 13.1 1.5 1 23 294 317 294 317 0.96

4 11 0.053 5.1 8.3 3.4 1 21 323 343 323 345 0.95

5 11 0.00013 0.013 16.5 1.9 1 23 351 373 351 373 0.99

6 11 0.00018 0.018 16.0 1.4 1 23 379 401 379 401 0.98

7 11 0.00065 0.063 14.3 3.0 1 23 408 431 408 431 0.97

8 11 0.23 23 6.2 2.7 2 23 438 459 437 459 0.93

9 11 0.0002 0.019 15.9 0.8 1 23 465 487 465 487 0.99

10 11 0.00034 0.033 15.2 7.4 1 23 493 516 493 516 0.95

11 11 2.2e-06 0.00021 22.1 5.0 1 23 530 552 530 552 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00086	0.083	13.9	4.5	1	23	238	260	238	260	0.97
2	11	4.1e-06	0.0004	21.2	3.0	1	23	266	288	266	288	0.98
3	11	0.0015	0.15	13.1	1.5	1	23	294	317	294	317	0.96
4	11	0.053	5.1	8.3	3.4	1	21	323	343	323	345	0.95
5	11	0.00013	0.013	16.5	1.9	1	23	351	373	351	373	0.99
6	11	0.00018	0.018	16.0	1.4	1	23	379	401	379	401	0.98
7	11	0.00065	0.063	14.3	3.0	1	23	408	431	408	431	0.97
8	11	0.23	23	6.2	2.7	2	23	438	459	437	459	0.93
9	11	0.0002	0.019	15.9	0.8	1	23	465	487	465	487	0.99
10	11	0.00034	0.033	15.2	7.4	1	23	493	516	493	516	0.95
11	11	2.2e-06	0.00021	22.1	5.0	1	23	530	552	530	552	0.98

Sequence Information

Coding Sequence: ATGTCTGAAAACGAAGGAACAACtattgtatTAGATGGTGGATCATCTGCAAATACTATGACTATTGATGCGGCTCACATAAAGTTGGAGGCTTCAACCTCTGGCACTGAAAATATAActgatatacaaaattatttggattcatttaataaagaaattgaAGGAAATGAAGTAACACAAGTACAAACtgatGGGGACTCAGTAGAAcatgcatattttattgatcaaaatgtccaatattattatcaaacaacTACAGGAGATGGCCAGATGGTTATGATTGgaggactTTCAGAACAAGATGCACAAATGATGGCTCagacaaatgaaaataatatggataatgTCACTCAAATTGTTCTGCCTAATGtacaagataaaattaaaaaagatatccctcaaaTTGTTGCTTTAGCAGATGGTAGTGGGTATCAAACAGTAACTCTAGTTCAAGCTGATGCTGAAGCCAACAATTATGTACTTTATGTAGTCAaacaaaatgacaaaaattatgAAACTCCAAATGTTATGGAGATGTCACAAGAAGAACATGATCCAGATGATCCTGATGTTAGTaatgtatatgattttaatgatGCAGAAGATCCAACAATAccaaaaaaacaagaaatagaAgatTCAGGTGAAGAAGAtgacaaatctaaaatagttaaattagtACCTAAAAAGTCACAAACAGTAACTCAAGCACATATGTGTAATTATTGCAATTACACTACTGGAAAAAGGTATTTATTGTCTCGTCATATGAAGTCTCATTCTAAAGAACGTCCACATAAATGTACTGTTTGTGAACGTGGTTTCAAAACTCTAACTTCTTTGCAAAATCATATGAATACTCATACTGGAATAAAACCATATCATTGTCGAAGTTGTCCAAGTGCTTTTACTACATCAGgagAACTTGTTAGACATGTTCGGTATAAACATACTCATGAAAAACCAcataaatgtacaatatgtgATTATGCTAGTGTAGAACTTAGCAAAATGAGAAATCATATGAGATGTCACACTGGTGAAAGACCATACcaatgtcCACATTGTACTTATGCAAGTCcagatacatttaaattaaagcGGCATTTGCGTATACACACTGGTGAAAAGCCATATGAATGTGATATCTGCTTTTCTAGGTTTACCCAATCCAACAGTTTAAAAACACACAGATTAATCCATagtgGTGAAAAGCCTGTATTTAAATGTGACCATTGTCCTGCTACTTGTGGGCGTAAAACTGATTTACGTATACATGTACAAAAGCTTCATACTTCTGATAAACCTATTAAGTGCAAACGATGTGATGATGCATTTCCTGATCGTTACCAGTACAAGGTTCACTGTAAATCGCACGAAGgggaaaaatgttataaatgtgAACTGTGTCCCTATGCTTCCATGTCTCAGCGTCATCTTGAAACTCATATGTTAATACATACAGATGAAAAACCATTCCATTGTAAACAATGTGATCagtcATTCagacaaaaacaattattgcgCCGCCATCATAATTTGTATCATAATCCAGCATATATACCACCTCCACCACATGCCAAAACTCATCAGTGTAATACATGTCAACGATCATTTAGACATAAAGGAAATTTATTAAGACATATGGAAGTTCATATGCAAGAATCAACTGGAAATGATCGAAATACAGCAATAAAACAAAGATTagagTATACAGATTCAGCTAATGAGGATGAATCTGAGGAAGACACAAGTATTCCAACAAGTGAAACTGGAGTTGTAGCAGTAGAAGGTGAAGACGGACAGCAATATGTTGTGCTTGAAGTGATTCAACTTGATGGTCAAGATCAGATAGGTAATTACACAGCCTCAAGTGTATCATTACAGCAAGTTGACCAATCTtcttCGCCAAGTCAAAAAGaccttacaattttaaaaaccgcATCTTTACCAGACGTGAAAGAAGAATGTGGTGATGGtagttaa
Protein Sequence: MSENEGTTIVLDGGSSANTMTIDAAHIKLEASTSGTENITDIQNYLDSFNKEIEGNEVTQVQTDGDSVEHAYFIDQNVQYYYQTTTGDGQMVMIGGLSEQDAQMMAQTNENNMDNVTQIVLPNVQDKIKKDIPQIVALADGSGYQTVTLVQADAEANNYVLYVVKQNDKNYETPNVMEMSQEEHDPDDPDVSNVYDFNDAEDPTIPKKQEIEDSGEEDDKSKIVKLVPKKSQTVTQAHMCNYCNYTTGKRYLLSRHMKSHSKERPHKCTVCERGFKTLTSLQNHMNTHTGIKPYHCRSCPSAFTTSGELVRHVRYKHTHEKPHKCTICDYASVELSKMRNHMRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDICFSRFTQSNSLKTHRLIHSGEKPVFKCDHCPATCGRKTDLRIHVQKLHTSDKPIKCKRCDDAFPDRYQYKVHCKSHEGEKCYKCELCPYASMSQRHLETHMLIHTDEKPFHCKQCDQSFRQKQLLRRHHNLYHNPAYIPPPPHAKTHQCNTCQRSFRHKGNLLRHMEVHMQESTGNDRNTAIKQRLEYTDSANEDESEEDTSIPTSETGVVAVEGEDGQQYVVLEVIQLDGQDQIGNYTASSVSLQQVDQSSSPSQKDLTILKTASLPDVKEECGDGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00184818;
90% Identity: iTF_01305054;
80% Identity: -