Basic Information

Insect: Diuraphis noxia
Gene Symbol: -
Assembly: GCA_001186385.1
Location: NW:680292-689365[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00059 0.04 13.9 4.5 1 23 240 262 240 262 0.97

2 11 1.6e-05 0.0011 18.8 2.5 1 23 268 290 268 290 0.98

3 11 0.00015 0.01 15.7 0.5 1 23 296 319 296 319 0.97

4 11 0.036 2.5 8.2 3.4 1 21 325 345 325 347 0.95

5 11 9.1e-05 0.0063 16.4 1.9 1 23 353 375 353 375 0.99

6 11 0.00012 0.0086 16.0 1.4 1 23 381 403 381 403 0.98

7 11 0.00045 0.031 14.2 3.0 1 23 410 433 410 433 0.97

8 11 0.066 4.5 7.4 2.4 2 23 440 461 439 461 0.93

9 11 0.00014 0.0094 15.8 0.8 1 23 467 489 467 489 0.99

10 11 0.00024 0.016 15.1 7.0 1 23 495 518 495 518 0.95

11 11 1.5e-06 0.0001 22.0 5.0 1 23 532 554 532 554 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00059	0.04	13.9	4.5	1	23	240	262	240	262	0.97
2	11	1.6e-05	0.0011	18.8	2.5	1	23	268	290	268	290	0.98
3	11	0.00015	0.01	15.7	0.5	1	23	296	319	296	319	0.97
4	11	0.036	2.5	8.2	3.4	1	21	325	345	325	347	0.95
5	11	9.1e-05	0.0063	16.4	1.9	1	23	353	375	353	375	0.99
6	11	0.00012	0.0086	16.0	1.4	1	23	381	403	381	403	0.98
7	11	0.00045	0.031	14.2	3.0	1	23	410	433	410	433	0.97
8	11	0.066	4.5	7.4	2.4	2	23	440	461	439	461	0.93
9	11	0.00014	0.0094	15.8	0.8	1	23	467	489	467	489	0.99
10	11	0.00024	0.016	15.1	7.0	1	23	495	518	495	518	0.95
11	11	1.5e-06	0.0001	22.0	5.0	1	23	532	554	532	554	0.98

Sequence Information

Coding Sequence: ATGTCTGAAAACGAAGGATCAACAATAGTGTTAGATGGCGGAGCATCAGCAAATACTATGACTATTGATGGGACTCACATAAAACTAGAGGCTTCAACTTCTGGTTCTGAAAATATAACAGATATACAAAATTACTTGGATTCRTTTAATAAAGAAATTGAAGGAAATGAAGTGACACAAGTGCAAACtgatGGGGATCCAGTAGAACATGCATATTTCATAGATCAAAAtgtccaatattattatcaaacaactACAGGGGATGGTCAGATGGTTATGGTTGGAGgacTTTCAGAACATGATGCACAAATGATGGCTAActcaaatgaaaacaatatgaACAATGTAACTCAAATTGTTCTCCCTAACGtacaagataaaattaaaaaagatatcccccaaATTGTTGCTTTAGGAGATGGTAGTGGGTATCAAACAGTTACTCTTGTTCAAGCGGACGCTGATACCAACAATTACGTTCTTTATGTAGTCAAAcaacaaaatgataaaaatgatgaaaCATCAAAYGTTAGTATGGAGATTTCTCAAGAAGATCCAGATCCAGATGATCCCGatgttaataatgtatatgatttCAATGATGGGGAAGATCCAACTCTACcaaaaaaacaagaaatagaAgatTCAGGTGAAGAAGATGACAAAtctaaaataccaaaattagTACCTAAAAAGTCGCAAACAGTAACTCAAGCACATatgtgtaattattgtaattatactaCTGGAAAAAGgtatttgtTGTCTCGTCATATGAAGTCTCATTCTAAAGAACGTCCACATAAGTGTACTGTTTGTGAGCGTGGTTTCAAAACTTTAACATCTTTGCAAAATCATGTTAATACACATACYGGTACAAAACCATATCAATGTAGAAGTTGTCCTAGTGCTTTTACTACATCagGAGAACTTGTTAGACATGTTCGGTATAAGCATACTCATGAAAAACCAcataaatgtacaatatgtgATTATGCCAGTGTAGAACTTAGTAAAATGAGAAATCACATGAGATGTCATACTGGTGAAAGACCATACCAAtgcCCCCATTGTACTTATGCTAGTCCagatacatttaaattgaaacgCCATTTGCGCATacacactggtgaaaaaccTTAYGAGTGTGATATTTGCTTTTCTAGATTTACCCAATCCAACAGTTTAAAAACACACAGACTAATACATAGYgGCGAAAAACCTGTATTTAAATGTGATCATTGTCCAGCCACATGTGGTCGAAAAACAGATTTACGTATTCATGTACAAAAGCTTCATACCTCCGACAAACCTATTAAGTGCAAACGATGTGGTGATGCGTTCCCAGATCGTTACCAGTATAAGGTTCACTGTAAATCACACGAAGgggaaaaatgttataaatgtgaATTGTGTCCTTATGCTTCCATGTCTCAGCGTCATCTTGAAACTCACATGTTAATACACACTGATGAAAAACCATTTCATTGTAAACTATGTGATCAgtcATTCAGACAAAAACAATTACTACGCCGTCATCATAATTTGTATCATAATCCAGCATATATACCACCTCCACCACATGCAAAAACTCATCAGTGTAATACATGCCAACGATCATTTAGGCATAAAGGAAATTTACTAAGACACATGGAAGTTCATATGCAAGAATCAACTGGAAATGACCGAAACACAGCATTAAAACAAAGACTggagTATACAGACTCAGCTAATGAGGACGAATCTGAGGAGGACACAAGTATTCCAACAAGTGAAACTGGAGTTGTAGCAGTAGAAGGTGATGATGGACAGCAATATGTAGTACTTGAAGTGATTCAACTTGATGGTCAAGATCAGATAGACAATTACACATCCACAAGTGTATCAATACAACAAGTTGACCAATCTTCTTctCCAAGTCAAAAAGACCTTACCATTTTAAAAACAGCGTCTTTATTAGATGTGAAAGAAGAATGTGGTGACGGTGTTGAAAATTGTTTCGGTTTTGATGATGAAGATGAAGAAGAAACAACAAACTCAGGTGGTTAA
Protein Sequence: MSENEGSTIVLDGGASANTMTIDGTHIKLEASTSGSENITDIQNYLDSFNKEIEGNEVTQVQTDGDPVEHAYFIDQNVQYYYQTTTGDGQMVMVGGLSEHDAQMMANSNENNMNNVTQIVLPNVQDKIKKDIPQIVALGDGSGYQTVTLVQADADTNNYVLYVVKQQNDKNDETSNVSMEISQEDPDPDDPDVNNVYDFNDGEDPTLPKKQEIEDSGEEDDKSKIPKLVPKKSQTVTQAHMCNYCNYTTGKRYLLSRHMKSHSKERPHKCTVCERGFKTLTSLQNHVNTHTGTKPYQCRSCPSAFTTSGELVRHVRYKHTHEKPHKCTICDYASVELSKMRNHMRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDICFSRFTQSNSLKTHRLIHSGEKPVFKCDHCPATCGRKTDLRIHVQKLHTSDKPIKCKRCGDAFPDRYQYKVHCKSHEGEKCYKCELCPYASMSQRHLETHMLIHTDEKPFHCKLCDQSFRQKQLLRRHHNLYHNPAYIPPPPHAKTHQCNTCQRSFRHKGNLLRHMEVHMQESTGNDRNTALKQRLEYTDSANEDESEEDTSIPTSETGVVAVEGDDGQQYVVLEVIQLDGQDQIDNYTSTSVSIQQVDQSSSPSQKDLTILKTASLLDVKEECGDGVENCFGFDDEDEEETTNSGG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00184818;
90% Identity: iTF_01305054;
80% Identity: -